Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02000 and AO353_02005 overlap by 11 nucleotides AO353_02005 and AO353_02010 are separated by 32 nucleotides
AO353_02000: AO353_02000 - polysaccharide/polyol phosphate ABC transporter ATP-binding protein, at 426,352 to 427,641
_02000
AO353_02005: AO353_02005 - hypothetical protein, at 427,631 to 428,440
_02005
AO353_02010: AO353_02010 - glycosyl transferase family 1, at 428,473 to 429,720
_02010
Position (kb) 427
428
429 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 426.749 kb on - strand, within AO353_02000 at 426.749 kb on - strand, within AO353_02000 at 426.751 kb on - strand, within AO353_02000 at 426.868 kb on - strand, within AO353_02000 at 426.911 kb on - strand, within AO353_02000 at 426.957 kb on - strand, within AO353_02000 at 426.961 kb on - strand, within AO353_02000 at 426.988 kb on - strand, within AO353_02000 at 427.159 kb on - strand, within AO353_02000 at 427.503 kb on + strand, within AO353_02000 at 427.504 kb on - strand, within AO353_02000 at 427.584 kb on - strand at 427.584 kb on - strand at 427.587 kb on + strand at 427.988 kb on + strand, within AO353_02005 at 427.989 kb on - strand, within AO353_02005 at 428.132 kb on - strand, within AO353_02005 at 428.387 kb on - strand at 428.647 kb on + strand, within AO353_02010 at 428.647 kb on + strand, within AO353_02010 at 428.648 kb on - strand, within AO353_02010 at 428.650 kb on + strand, within AO353_02010 at 428.650 kb on + strand, within AO353_02010 at 428.650 kb on + strand, within AO353_02010 at 428.651 kb on - strand, within AO353_02010 at 428.651 kb on - strand, within AO353_02010 at 428.700 kb on + strand, within AO353_02010 at 428.701 kb on - strand, within AO353_02010 at 428.776 kb on + strand, within AO353_02010 at 428.777 kb on - strand, within AO353_02010 at 428.800 kb on - strand, within AO353_02010 at 428.800 kb on - strand, within AO353_02010 at 428.833 kb on + strand, within AO353_02010 at 428.834 kb on - strand, within AO353_02010 at 428.834 kb on - strand, within AO353_02010 at 428.941 kb on - strand, within AO353_02010 at 429.069 kb on + strand, within AO353_02010 at 429.071 kb on + strand, within AO353_02010 at 429.174 kb on + strand, within AO353_02010 at 429.174 kb on + strand, within AO353_02010 at 429.198 kb on - strand, within AO353_02010 at 429.198 kb on - strand, within AO353_02010 at 429.411 kb on + strand, within AO353_02010 at 429.411 kb on + strand, within AO353_02010
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 426,749 - AO353_02000 0.31 -1.6 426,749 - AO353_02000 0.31 -1.1 426,751 - AO353_02000 0.31 -1.4 426,868 - AO353_02000 0.40 -0.7 426,911 - AO353_02000 0.43 -0.5 426,957 - AO353_02000 0.47 +2.1 426,961 - AO353_02000 0.47 +2.7 426,988 - AO353_02000 0.49 -1.4 427,159 - AO353_02000 0.63 -2.3 427,503 + AO353_02000 0.89 +0.7 427,504 - AO353_02000 0.89 -0.2 427,584 - -1.7 427,584 - -0.5 427,587 + -0.7 427,988 + AO353_02005 0.44 -2.0 427,989 - AO353_02005 0.44 -0.3 428,132 - AO353_02005 0.62 -0.9 428,387 - -0.9 428,647 + AO353_02010 0.14 -0.5 428,647 + AO353_02010 0.14 +2.0 428,648 - AO353_02010 0.14 -1.0 428,650 + AO353_02010 0.14 -1.0 428,650 + AO353_02010 0.14 -1.8 428,650 + AO353_02010 0.14 -1.3 428,651 - AO353_02010 0.14 +0.7 428,651 - AO353_02010 0.14 +0.4 428,700 + AO353_02010 0.18 -0.9 428,701 - AO353_02010 0.18 -1.5 428,776 + AO353_02010 0.24 -2.5 428,777 - AO353_02010 0.24 -0.8 428,800 - AO353_02010 0.26 -0.9 428,800 - AO353_02010 0.26 -0.9 428,833 + AO353_02010 0.29 -0.7 428,834 - AO353_02010 0.29 -1.0 428,834 - AO353_02010 0.29 -0.6 428,941 - AO353_02010 0.38 -2.8 429,069 + AO353_02010 0.48 -0.7 429,071 + AO353_02010 0.48 -0.1 429,174 + AO353_02010 0.56 +1.1 429,174 + AO353_02010 0.56 -0.3 429,198 - AO353_02010 0.58 -1.4 429,198 - AO353_02010 0.58 -1.2 429,411 + AO353_02010 0.75 +2.4 429,411 + AO353_02010 0.75 -1.3
Or see this region's nucleotide sequence