Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05155

Experiment: Formate with sodium chlorite 3.125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05140 and MMP_RS05145 overlap by 4 nucleotidesMMP_RS05145 and MMP_RS05150 are separated by 9 nucleotidesMMP_RS05150 and MMP_RS05155 are separated by 157 nucleotidesMMP_RS05155 and MMP_RS05160 are separated by 231 nucleotidesMMP_RS05160 and MMP_RS05165 are separated by 297 nucleotides MMP_RS05140: MMP_RS05140 - helix-turn-helix transcriptional regulator, at 981,206 to 981,406 _RS05140 MMP_RS05145: MMP_RS05145 - hypothetical protein, at 981,403 to 981,789 _RS05145 MMP_RS05150: MMP_RS05150 - hypothetical protein, at 981,799 to 982,230 _RS05150 MMP_RS05155: MMP_RS05155 - hypothetical protein, at 982,388 to 982,651 _RS05155 MMP_RS05160: MMP_RS05160 - cupredoxin family copper-binding protein, at 982,883 to 983,239 _RS05160 MMP_RS05165: MMP_RS05165 - right-handed parallel beta-helix repeat-containing protein, at 983,537 to 984,193 _RS05165 Position (kb) 982 983Strain fitness (log2 ratio) -1 0 1at 981.392 kb on - strandat 981.442 kb on - strand, within MMP_RS05145at 981.499 kb on - strand, within MMP_RS05145at 981.513 kb on - strand, within MMP_RS05145at 981.513 kb on - strand, within MMP_RS05145at 981.569 kb on - strand, within MMP_RS05145at 981.582 kb on - strand, within MMP_RS05145at 981.634 kb on - strand, within MMP_RS05145at 981.635 kb on + strand, within MMP_RS05145at 981.635 kb on + strand, within MMP_RS05145at 981.635 kb on + strand, within MMP_RS05145at 981.635 kb on + strand, within MMP_RS05145at 981.652 kb on + strand, within MMP_RS05145at 981.652 kb on + strand, within MMP_RS05145at 981.653 kb on - strand, within MMP_RS05145at 981.653 kb on - strand, within MMP_RS05145at 981.655 kb on - strand, within MMP_RS05145at 981.655 kb on - strand, within MMP_RS05145at 981.655 kb on - strand, within MMP_RS05145at 981.655 kb on - strand, within MMP_RS05145at 981.656 kb on + strand, within MMP_RS05145at 981.656 kb on + strand, within MMP_RS05145at 981.656 kb on + strand, within MMP_RS05145at 981.659 kb on + strand, within MMP_RS05145at 981.679 kb on - strand, within MMP_RS05145at 981.694 kb on - strand, within MMP_RS05145at 981.695 kb on + strand, within MMP_RS05145at 981.719 kb on - strand, within MMP_RS05145at 981.749 kb on + strand, within MMP_RS05145at 981.825 kb on + strandat 981.842 kb on + strandat 981.871 kb on - strand, within MMP_RS05150at 981.871 kb on - strand, within MMP_RS05150at 981.887 kb on - strand, within MMP_RS05150at 981.888 kb on + strand, within MMP_RS05150at 981.924 kb on + strand, within MMP_RS05150at 981.989 kb on + strand, within MMP_RS05150at 981.991 kb on - strand, within MMP_RS05150at 981.991 kb on - strand, within MMP_RS05150at 982.124 kb on - strand, within MMP_RS05150at 982.125 kb on + strand, within MMP_RS05150at 982.316 kb on - strandat 982.360 kb on - strandat 982.435 kb on + strand, within MMP_RS05155at 982.435 kb on + strand, within MMP_RS05155at 982.502 kb on - strand, within MMP_RS05155at 982.502 kb on - strand, within MMP_RS05155at 982.503 kb on + strand, within MMP_RS05155at 982.611 kb on + strand, within MMP_RS05155at 982.611 kb on + strand, within MMP_RS05155at 982.611 kb on + strand, within MMP_RS05155at 982.666 kb on - strandat 982.667 kb on + strandat 982.667 kb on + strandat 982.727 kb on + strandat 982.773 kb on + strandat 982.830 kb on - strandat 982.852 kb on - strandat 982.874 kb on + strandat 982.914 kb on - strandat 982.915 kb on + strandat 982.928 kb on + strand, within MMP_RS05160at 982.928 kb on + strand, within MMP_RS05160at 982.928 kb on + strand, within MMP_RS05160at 982.932 kb on - strand, within MMP_RS05160at 982.936 kb on + strand, within MMP_RS05160at 982.940 kb on + strand, within MMP_RS05160at 982.940 kb on + strand, within MMP_RS05160at 982.941 kb on - strand, within MMP_RS05160at 982.942 kb on + strand, within MMP_RS05160at 982.942 kb on + strand, within MMP_RS05160at 982.942 kb on + strand, within MMP_RS05160at 982.949 kb on - strand, within MMP_RS05160at 982.963 kb on - strand, within MMP_RS05160at 982.964 kb on + strand, within MMP_RS05160at 983.007 kb on + strand, within MMP_RS05160at 983.024 kb on - strand, within MMP_RS05160at 983.024 kb on - strand, within MMP_RS05160at 983.156 kb on + strand, within MMP_RS05160at 983.217 kb on + strandat 983.219 kb on - strandat 983.220 kb on + strandat 983.220 kb on + strandat 983.265 kb on + strandat 983.265 kb on + strandat 983.285 kb on - strandat 983.291 kb on - strandat 983.313 kb on - strandat 983.314 kb on + strandat 983.319 kb on + strandat 983.324 kb on + strandat 983.341 kb on - strandat 983.342 kb on + strandat 983.412 kb on - strandat 983.583 kb on - strandat 983.595 kb on - strandat 983.646 kb on - strand, within MMP_RS05165at 983.646 kb on - strand, within MMP_RS05165at 983.646 kb on - strand, within MMP_RS05165at 983.646 kb on - strand, within MMP_RS05165at 983.647 kb on + strand, within MMP_RS05165

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with sodium chlorite 3.125 mM
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981,392 - +0.3
981,442 - MMP_RS05145 0.10 -0.4
981,499 - MMP_RS05145 0.25 +0.3
981,513 - MMP_RS05145 0.28 +0.1
981,513 - MMP_RS05145 0.28 +0.2
981,569 - MMP_RS05145 0.43 +0.5
981,582 - MMP_RS05145 0.46 -0.5
981,634 - MMP_RS05145 0.60 +0.3
981,635 + MMP_RS05145 0.60 +0.2
981,635 + MMP_RS05145 0.60 -0.1
981,635 + MMP_RS05145 0.60 -0.0
981,635 + MMP_RS05145 0.60 +0.2
981,652 + MMP_RS05145 0.64 +0.2
981,652 + MMP_RS05145 0.64 -0.3
981,653 - MMP_RS05145 0.65 -0.1
981,653 - MMP_RS05145 0.65 -0.2
981,655 - MMP_RS05145 0.65 -1.0
981,655 - MMP_RS05145 0.65 -0.0
981,655 - MMP_RS05145 0.65 -0.3
981,655 - MMP_RS05145 0.65 -0.3
981,656 + MMP_RS05145 0.65 +0.5
981,656 + MMP_RS05145 0.65 +0.2
981,656 + MMP_RS05145 0.65 +0.1
981,659 + MMP_RS05145 0.66 +0.4
981,679 - MMP_RS05145 0.71 +0.4
981,694 - MMP_RS05145 0.75 -0.3
981,695 + MMP_RS05145 0.75 -0.4
981,719 - MMP_RS05145 0.82 -0.2
981,749 + MMP_RS05145 0.89 +0.6
981,825 + -0.7
981,842 + -0.2
981,871 - MMP_RS05150 0.17 -0.2
981,871 - MMP_RS05150 0.17 +0.3
981,887 - MMP_RS05150 0.20 -0.2
981,888 + MMP_RS05150 0.21 +0.2
981,924 + MMP_RS05150 0.29 +0.4
981,989 + MMP_RS05150 0.44 +0.5
981,991 - MMP_RS05150 0.44 -0.4
981,991 - MMP_RS05150 0.44 +0.4
982,124 - MMP_RS05150 0.75 -0.2
982,125 + MMP_RS05150 0.75 -0.8
982,316 - +0.3
982,360 - -0.3
982,435 + MMP_RS05155 0.18 -0.1
982,435 + MMP_RS05155 0.18 -0.0
982,502 - MMP_RS05155 0.43 -0.7
982,502 - MMP_RS05155 0.43 -0.4
982,503 + MMP_RS05155 0.44 -0.6
982,611 + MMP_RS05155 0.84 -0.9
982,611 + MMP_RS05155 0.84 -0.8
982,611 + MMP_RS05155 0.84 +0.4
982,666 - +0.7
982,667 + +0.1
982,667 + +0.7
982,727 + -0.1
982,773 + +1.3
982,830 - +0.2
982,852 - +0.1
982,874 + +0.2
982,914 - +0.0
982,915 + -0.0
982,928 + MMP_RS05160 0.13 -0.0
982,928 + MMP_RS05160 0.13 +0.6
982,928 + MMP_RS05160 0.13 -0.2
982,932 - MMP_RS05160 0.14 +0.9
982,936 + MMP_RS05160 0.15 -0.3
982,940 + MMP_RS05160 0.16 +0.5
982,940 + MMP_RS05160 0.16 -0.5
982,941 - MMP_RS05160 0.16 +0.4
982,942 + MMP_RS05160 0.17 -0.2
982,942 + MMP_RS05160 0.17 -0.5
982,942 + MMP_RS05160 0.17 +1.2
982,949 - MMP_RS05160 0.18 -0.3
982,963 - MMP_RS05160 0.22 -1.1
982,964 + MMP_RS05160 0.23 -0.3
983,007 + MMP_RS05160 0.35 +0.1
983,024 - MMP_RS05160 0.39 +0.2
983,024 - MMP_RS05160 0.39 +0.9
983,156 + MMP_RS05160 0.76 -1.2
983,217 + +0.7
983,219 - +0.4
983,220 + -0.1
983,220 + -0.4
983,265 + +0.4
983,265 + +0.2
983,285 - +0.2
983,291 - -0.2
983,313 - -0.3
983,314 + +0.3
983,319 + -0.1
983,324 + +0.6
983,341 - +0.5
983,342 + -0.6
983,412 - +0.7
983,583 - +0.1
983,595 - -0.2
983,646 - MMP_RS05165 0.17 -0.0
983,646 - MMP_RS05165 0.17 -0.8
983,646 - MMP_RS05165 0.17 +0.1
983,646 - MMP_RS05165 0.17 -0.3
983,647 + MMP_RS05165 0.17 -0.6

Or see this region's nucleotide sequence