Experiment: Formate with sodium chlorite 3.125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04115 and MMP_RS04120 are separated by 373 nucleotides MMP_RS04120 and MMP_RS04125 are separated by 214 nucleotides MMP_RS04125 and MMP_RS04130 are separated by 102 nucleotides
MMP_RS04115: MMP_RS04115 - cytosine permease, at 781,596 to 782,831
_RS04115
MMP_RS04120: MMP_RS04120 - hypothetical protein, at 783,205 to 783,807
_RS04120
MMP_RS04125: MMP_RS04125 - TetR/AcrR family transcriptional regulator, at 784,022 to 784,600
_RS04125
MMP_RS04130: MMP_RS04130 - alpha/beta hydrolase, at 784,703 to 785,689
_RS04130
Position (kb) 783
784 Strain fitness (log2 ratio) -1
0
1 at 782.314 kb on + strand, within MMP_RS04115 at 782.358 kb on + strand, within MMP_RS04115 at 782.361 kb on - strand, within MMP_RS04115 at 782.364 kb on - strand, within MMP_RS04115 at 782.365 kb on + strand, within MMP_RS04115 at 782.370 kb on + strand, within MMP_RS04115 at 782.390 kb on + strand, within MMP_RS04115 at 782.399 kb on - strand, within MMP_RS04115 at 782.400 kb on + strand, within MMP_RS04115 at 782.406 kb on - strand, within MMP_RS04115 at 782.427 kb on - strand, within MMP_RS04115 at 782.427 kb on - strand, within MMP_RS04115 at 782.428 kb on + strand, within MMP_RS04115 at 782.437 kb on + strand, within MMP_RS04115 at 782.536 kb on - strand, within MMP_RS04115 at 782.536 kb on - strand, within MMP_RS04115 at 782.605 kb on - strand, within MMP_RS04115 at 782.626 kb on + strand, within MMP_RS04115 at 782.637 kb on - strand, within MMP_RS04115 at 782.758 kb on + strand at 782.833 kb on + strand at 782.838 kb on + strand at 782.838 kb on + strand at 782.849 kb on + strand at 782.919 kb on - strand at 782.920 kb on + strand at 782.920 kb on + strand at 782.921 kb on - strand at 782.949 kb on + strand at 782.956 kb on + strand at 782.989 kb on + strand at 783.008 kb on + strand at 783.051 kb on - strand at 783.051 kb on - strand at 783.078 kb on + strand at 783.078 kb on + strand at 783.106 kb on + strand at 783.146 kb on - strand at 783.168 kb on + strand at 783.226 kb on + strand at 783.226 kb on + strand at 783.228 kb on + strand at 783.228 kb on + strand at 783.257 kb on - strand at 783.356 kb on - strand, within MMP_RS04120 at 783.418 kb on - strand, within MMP_RS04120 at 783.466 kb on - strand, within MMP_RS04120 at 783.512 kb on + strand, within MMP_RS04120 at 783.569 kb on + strand, within MMP_RS04120 at 783.667 kb on - strand, within MMP_RS04120 at 783.667 kb on - strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.671 kb on - strand, within MMP_RS04120 at 783.671 kb on - strand, within MMP_RS04120 at 783.678 kb on - strand, within MMP_RS04120 at 783.678 kb on - strand, within MMP_RS04120 at 783.679 kb on + strand, within MMP_RS04120 at 783.681 kb on - strand, within MMP_RS04120 at 783.687 kb on - strand, within MMP_RS04120 at 783.693 kb on + strand, within MMP_RS04120 at 783.717 kb on - strand, within MMP_RS04120 at 783.759 kb on - strand at 783.795 kb on - strand at 783.800 kb on - strand at 783.801 kb on + strand at 783.819 kb on + strand at 783.850 kb on - strand at 783.850 kb on - strand at 783.855 kb on - strand at 783.859 kb on + strand at 783.859 kb on + strand at 783.861 kb on - strand at 783.866 kb on - strand at 783.866 kb on - strand at 783.904 kb on - strand at 783.921 kb on - strand at 783.969 kb on - strand at 783.969 kb on - strand at 783.970 kb on + strand at 783.970 kb on + strand at 783.970 kb on + strand at 783.972 kb on + strand at 784.017 kb on - strand at 784.017 kb on - strand at 784.017 kb on - strand at 784.018 kb on + strand at 784.018 kb on + strand at 784.018 kb on + strand at 784.019 kb on - strand at 784.019 kb on - strand at 784.019 kb on - strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.022 kb on + strand at 784.022 kb on + strand at 784.022 kb on + strand at 784.055 kb on + strand at 784.142 kb on + strand, within MMP_RS04125 at 784.504 kb on + strand, within MMP_RS04125 at 784.513 kb on + strand, within MMP_RS04125 at 784.534 kb on - strand, within MMP_RS04125 at 784.547 kb on + strand at 784.573 kb on - strand at 784.576 kb on + strand at 784.576 kb on + strand at 784.610 kb on + strand at 784.649 kb on - strand at 784.650 kb on + strand at 784.653 kb on - strand at 784.658 kb on - strand at 784.671 kb on - strand at 784.765 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with sodium chlorite 3.125 mM remove 782,314 + MMP_RS04115 0.58 -0.1 782,358 + MMP_RS04115 0.62 +0.1 782,361 - MMP_RS04115 0.62 -0.4 782,364 - MMP_RS04115 0.62 -0.3 782,365 + MMP_RS04115 0.62 -0.2 782,370 + MMP_RS04115 0.63 -0.7 782,390 + MMP_RS04115 0.64 -0.8 782,399 - MMP_RS04115 0.65 +0.4 782,400 + MMP_RS04115 0.65 -0.1 782,406 - MMP_RS04115 0.66 -0.3 782,427 - MMP_RS04115 0.67 +0.6 782,427 - MMP_RS04115 0.67 -1.7 782,428 + MMP_RS04115 0.67 +0.3 782,437 + MMP_RS04115 0.68 -0.3 782,536 - MMP_RS04115 0.76 -0.3 782,536 - MMP_RS04115 0.76 -1.3 782,605 - MMP_RS04115 0.82 +0.3 782,626 + MMP_RS04115 0.83 -0.9 782,637 - MMP_RS04115 0.84 +0.6 782,758 + -0.9 782,833 + +0.3 782,838 + -0.1 782,838 + -0.4 782,849 + -0.2 782,919 - +0.0 782,920 + +0.1 782,920 + -0.3 782,921 - -0.6 782,949 + -0.6 782,956 + +0.1 782,989 + +0.4 783,008 + -0.6 783,051 - -0.3 783,051 - -1.1 783,078 + +0.1 783,078 + -0.1 783,106 + +0.9 783,146 - -0.6 783,168 + -0.6 783,226 + -0.8 783,226 + +0.6 783,228 + +0.4 783,228 + -0.6 783,257 - -0.4 783,356 - MMP_RS04120 0.25 -0.6 783,418 - MMP_RS04120 0.35 -0.6 783,466 - MMP_RS04120 0.43 +0.4 783,512 + MMP_RS04120 0.51 +0.3 783,569 + MMP_RS04120 0.60 -0.4 783,667 - MMP_RS04120 0.77 -0.5 783,667 - MMP_RS04120 0.77 -0.9 783,668 + MMP_RS04120 0.77 -0.4 783,668 + MMP_RS04120 0.77 -0.9 783,668 + MMP_RS04120 0.77 +0.2 783,668 + MMP_RS04120 0.77 -0.6 783,671 - MMP_RS04120 0.77 -0.3 783,671 - MMP_RS04120 0.77 +0.7 783,678 - MMP_RS04120 0.78 +0.2 783,678 - MMP_RS04120 0.78 -0.3 783,679 + MMP_RS04120 0.79 -0.0 783,681 - MMP_RS04120 0.79 -1.0 783,687 - MMP_RS04120 0.80 -0.5 783,693 + MMP_RS04120 0.81 -0.6 783,717 - MMP_RS04120 0.85 -1.0 783,759 - +0.0 783,795 - +0.3 783,800 - +0.2 783,801 + +0.1 783,819 + +0.1 783,850 - -0.7 783,850 - +0.3 783,855 - -1.2 783,859 + +0.3 783,859 + -0.4 783,861 - +0.1 783,866 - -0.8 783,866 - +0.1 783,904 - +0.1 783,921 - -0.3 783,969 - -0.6 783,969 - -0.6 783,970 + -0.2 783,970 + +0.2 783,970 + -0.1 783,972 + -0.6 784,017 - +0.3 784,017 - +0.3 784,017 - +0.3 784,018 + +0.7 784,018 + -1.0 784,018 + -0.4 784,019 - +0.2 784,019 - -0.6 784,019 - +0.3 784,020 + -0.2 784,020 + +0.2 784,020 + +0.0 784,020 + +0.4 784,020 + +0.7 784,022 + -0.4 784,022 + -0.0 784,022 + -0.8 784,055 + +0.3 784,142 + MMP_RS04125 0.21 +0.3 784,504 + MMP_RS04125 0.83 -0.7 784,513 + MMP_RS04125 0.85 -0.2 784,534 - MMP_RS04125 0.88 -0.6 784,547 + -0.8 784,573 - -0.2 784,576 + +0.4 784,576 + -0.9 784,610 + -0.5 784,649 - +0.3 784,650 + -0.2 784,653 - -1.0 784,658 - -0.3 784,671 - -0.5 784,765 + +0.6
Or see this region's nucleotide sequence