Strain Fitness in Pantoea sp. MT58 around IAI47_18325

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,899,112	-				-1.0
3,899,182	+				-0.9
3,899,182	+				-0.1
3,899,182	+				+1.0
3,899,183	-				+0.6
3,899,185	+				+2.2
3,899,185	+				+0.1
3,899,185	+				-0.8
3,899,186	-				-1.0
3,899,186	-				-1.1
3,899,186	-				-0.4
3,899,186	-				+0.9
3,899,186	-				-1.0
3,899,186	-				-1.0
3,899,186	-				+0.9
3,899,238	-				+2.5
3,899,239	+				-1.6
3,899,239	+				-0.8
3,899,239	+				-0.3
3,899,239	+				-0.5
3,899,239	+				+0.5
3,899,240	-				-0.7
3,899,240	-				+0.9
3,899,240	-				-2.1
3,899,284	+				+1.8
3,899,284	+				-2.1
3,899,285	-				+1.5
3,899,285	-				-0.2
3,899,285	-				-1.1
3,899,285	-				-1.4
3,899,293	+				+0.3
3,899,293	+				+2.0
3,899,293	+				+2.5
3,899,293	+				-0.2
3,899,293	+				-0.5
3,899,294	-				-0.1
3,899,294	-				-1.8
3,899,294	-				-0.0
3,899,294	-				-0.2
3,899,312	+				+0.3
3,899,312	+				+2.3
3,899,312	+				+0.0
3,899,312	+				-0.9
3,899,313	-				+1.0
3,899,517	+		IAI47_18320	0.50	+1.8
3,899,517	+				+2.5
3,899,518	-		IAI47_18320	0.50	+2.8
3,899,518	-		IAI47_18320	0.50	-0.7
3,899,518	-		IAI47_18320	0.50	-0.1
3,899,518	-		IAI47_18320	0.50	+0.7
3,899,518	-		IAI47_18320	0.50	+0.5
3,899,518	-		IAI47_18320	0.50	-0.3
3,899,518	-		IAI47_18320	0.50	-0.6
3,899,533	+		IAI47_18320	0.53	+1.5
3,899,539	+		IAI47_18320	0.54	-1.1
3,899,539	+		IAI47_18320	0.54	-2.1
3,899,539	+		IAI47_18320	0.54	+0.9
3,899,539	+		IAI47_18320	0.54	-0.9
3,899,539	+		IAI47_18320	0.54	+0.5
3,899,539	+		IAI47_18320	0.54	-1.1
3,899,539	+		IAI47_18320	0.54	-1.6
3,899,539	+		IAI47_18320	0.54	-0.4
3,899,539	+		IAI47_18320	0.54	+0.8
3,899,539	+		IAI47_18320	0.54	-0.8
3,899,540	-		IAI47_18320	0.54	-0.9
3,899,540	-		IAI47_18320	0.54	+0.4
3,899,540	-		IAI47_18320	0.54	+0.5
3,899,540	-		IAI47_18320	0.54	-0.4
3,899,618	-		IAI47_18320	0.71	-0.5
3,899,618	-		IAI47_18320	0.71	-1.2
3,899,618	-		IAI47_18320	0.71	-1.1
3,899,665	+		IAI47_18320	0.80	-0.5
3,899,665	+		IAI47_18320	0.80	+1.5
3,899,665	+		IAI47_18320	0.80	-1.4
3,899,665	+		IAI47_18320	0.80	-0.7
3,899,665	+		IAI47_18320	0.80	+0.0
3,899,665	+		IAI47_18320	0.80	+1.1
3,899,666	-		IAI47_18320	0.81	-1.9
3,899,666	-		IAI47_18320	0.81	+1.0
3,899,666	-		IAI47_18320	0.81	+0.3
3,899,666	-		IAI47_18320	0.81	-1.9
3,899,666	-		IAI47_18320	0.81	-0.1
3,899,666	-		IAI47_18320	0.81	-0.3
3,899,666	-		IAI47_18320	0.81	+1.7
3,899,666	-		IAI47_18320	0.81	+1.8
3,899,666	-		IAI47_18320	0.81	-0.7
3,899,666	-		IAI47_18320	0.81	-0.0
3,899,672	+		IAI47_18320	0.82	+0.9
3,899,673	-		IAI47_18320	0.82	+3.2
3,899,737	+				+0.8
3,899,737	+				+0.8
3,899,738	-				-0.2
3,899,738	-				-1.7
3,899,760	-				-0.5
3,899,856	+				-0.4
3,899,856	+				-0.4
3,899,856	+				+0.5
3,899,856	+				-0.4
3,899,856	+				-0.7
3,899,885	+				+1.1
3,899,885	+				-2.6
3,899,885	+				+1.7
3,899,925	+				-0.3
3,899,925	+				-0.4
3,899,925	+				+1.0
3,899,925	+				-0.2
3,899,925	+				+0.2
3,899,925	+				+0.0
3,899,926	-				+0.2
3,899,926	-				-1.1
3,899,926	-				-1.6
3,899,926	-				-1.3
3,899,926	-				+0.5
3,900,049	+				-1.9
3,900,050	-				-1.3
3,900,050	-				-1.0
3,900,074	+				-0.2
3,900,074	+				-1.2
3,900,074	+				+1.7
3,900,074	+				-0.3
3,900,075	-				-0.7
3,900,075	-				+2.1
3,900,075	-				+0.4
3,900,075	-				+0.6
3,900,075	-				+1.2
3,900,075	-				-0.7
3,900,075	-				-0.1
3,900,075	-				+0.6
3,900,082	-				+0.1
3,900,092	-				-1.1
3,900,092	-				-0.1
3,900,112	+				+0.3
3,900,112	+				-0.1
3,900,112	+				+1.0
3,900,113	-				+0.8
3,900,113	-				+0.9
3,900,113	-				+0.8
3,900,113	-				-0.4
3,900,154	+				-1.7
3,900,154	+				+1.1
3,900,155	-				+0.0
3,900,155	-				+0.9
3,900,187	+		IAI47_18325	0.12	+0.9
3,900,225	+		IAI47_18325	0.17	+1.0
3,900,226	+		IAI47_18325	0.17	-0.6
3,900,226	+		IAI47_18325	0.17	-1.5
3,900,226	+		IAI47_18325	0.17	-0.2
3,900,227	-		IAI47_18325	0.17	-1.8
3,900,227	-		IAI47_18325	0.17	-0.3
3,900,227	-		IAI47_18325	0.17	-0.7
3,900,227	-		IAI47_18325	0.17	-0.3
3,900,232	+		IAI47_18325	0.18	-1.1
3,900,232	+		IAI47_18325	0.18	-0.0
3,900,232	+		IAI47_18325	0.18	+0.9
3,900,233	-		IAI47_18325	0.18	+0.3
3,900,233	-		IAI47_18325	0.18	-2.0
3,900,270	+		IAI47_18325	0.22	-0.7
3,900,280	+		IAI47_18325	0.23	+0.1
3,900,281	-		IAI47_18325	0.23	+0.5
3,900,281	-		IAI47_18325	0.23	-1.0
3,900,281	-		IAI47_18325	0.23	-0.1
3,900,281	-		IAI47_18325	0.23	-0.7
3,900,281	-		IAI47_18325	0.23	+2.5
3,900,281	-		IAI47_18325	0.23	+0.3
3,900,281	-		IAI47_18325	0.23	-0.6
3,900,411	+		IAI47_18325	0.38	-1.3
3,900,411	+		IAI47_18325	0.38	-2.1
3,900,411	+		IAI47_18325	0.38	+0.0
3,900,412	-		IAI47_18325	0.39	-1.3
3,900,430	+		IAI47_18325	0.41	+2.0
3,900,431	-		IAI47_18325	0.41	+1.6
3,900,431	-		IAI47_18325	0.41	-1.6
3,900,466	+		IAI47_18325	0.45	-1.7
3,900,466	+		IAI47_18325	0.45	-1.0
3,900,466	+		IAI47_18325	0.45	-2.2
3,900,466	+		IAI47_18325	0.45	-0.8
3,900,466	+		IAI47_18325	0.45	-0.5
3,900,466	+		IAI47_18325	0.45	+1.0
3,900,466	+		IAI47_18325	0.45	-1.5
3,900,466	+		IAI47_18325	0.45	-2.0
3,900,467	-		IAI47_18325	0.45	-1.6
3,900,467	-		IAI47_18325	0.45	-1.3
3,900,467	-		IAI47_18325	0.45	-0.5
3,900,467	-		IAI47_18325	0.45	-1.0
3,900,467	-		IAI47_18325	0.45	-1.5
3,900,467	-		IAI47_18325	0.45	-1.4
3,900,467	-		IAI47_18325	0.45	-1.6
3,900,468	+		IAI47_18325	0.45	+1.5
3,900,468	+		IAI47_18325	0.45	-0.3
3,900,468	+		IAI47_18325	0.45	+0.3
3,900,468	+		IAI47_18325	0.45	-2.5
3,900,469	-		IAI47_18325	0.45	+0.5
3,900,469	-		IAI47_18325	0.45	-0.0
3,900,469	-		IAI47_18325	0.45	-1.1
3,900,469	-		IAI47_18325	0.45	-1.8
3,900,469	-		IAI47_18325	0.45	+1.8
3,900,469	-		IAI47_18325	0.45	-0.6
3,900,469	-		IAI47_18325	0.45	-0.7
3,900,469	-		IAI47_18325	0.45	+0.7
3,900,469	-		IAI47_18325	0.45	+0.9
3,900,469	-		IAI47_18325	0.45	-1.2
3,900,473	+		IAI47_18325	0.46	+1.0
3,900,473	+		IAI47_18325	0.46	-1.2
3,900,473	+		IAI47_18325	0.46	-0.3
3,900,473	+		IAI47_18325	0.46	+1.0
3,900,473	+		IAI47_18325	0.46	+2.3
3,900,474	-		IAI47_18325	0.46	-2.2
3,900,474	-		IAI47_18325	0.46	+0.1
3,900,474	-		IAI47_18325	0.46	-1.0
3,900,474	-		IAI47_18325	0.46	-0.8
3,900,512	+		IAI47_18325	0.50	-0.5
3,900,512	+		IAI47_18325	0.50	+0.4
3,900,513	-		IAI47_18325	0.50	+0.9
3,900,513	-		IAI47_18325	0.50	-0.4
3,900,552	+		IAI47_18325	0.55	+0.1
3,900,552	+		IAI47_18325	0.55	-0.3
3,900,560	-		IAI47_18325	0.56	+0.6
3,900,598	+		IAI47_18325	0.60	-0.5
3,900,598	+		IAI47_18325	0.60	-0.6
3,900,598	+		IAI47_18325	0.60	-1.1
3,900,598	+		IAI47_18325	0.60	-0.0
3,900,598	+		IAI47_18325	0.60	+0.4
3,900,599	-		IAI47_18325	0.60	+0.5
3,900,599	-		IAI47_18325	0.60	+0.5
3,900,600	+		IAI47_18325	0.60	-1.2
3,900,600	+		IAI47_18325	0.60	-0.2
3,900,601	-		IAI47_18325	0.61	+2.3
3,900,601	-		IAI47_18325	0.61	-0.2
3,900,601	-		IAI47_18325	0.61	-0.7
3,900,636	+		IAI47_18325	0.65	-1.1
3,900,636	+		IAI47_18325	0.65	-2.5
3,900,636	+		IAI47_18325	0.65	-0.7
3,900,636	+		IAI47_18325	0.65	-1.5
3,900,637	-		IAI47_18325	0.65	+0.8
3,900,637	-		IAI47_18325	0.65	+1.7
3,900,637	-		IAI47_18325	0.65	+0.3
3,900,637	-		IAI47_18325	0.65	-0.4
3,900,637	-		IAI47_18325	0.65	-1.4
3,900,637	-		IAI47_18325	0.65	+0.3
3,900,637	-		IAI47_18325	0.65	-1.0
3,900,651	+		IAI47_18325	0.66	+1.5
3,900,651	+		IAI47_18325	0.66	-0.5
3,900,651	+		IAI47_18325	0.66	-0.1
3,900,651	+		IAI47_18325	0.66	-0.3
3,900,652	-		IAI47_18325	0.66	+0.8
3,900,670	+		IAI47_18325	0.69	+0.3
3,900,670	+		IAI47_18325	0.69	-0.9
3,900,670	+		IAI47_18325	0.69	-2.0
3,900,671	-		IAI47_18325	0.69	+0.9
3,900,671	-		IAI47_18325	0.69	-2.4
3,900,671	-		IAI47_18325	0.69	+0.7
3,900,671	-		IAI47_18325	0.69	-2.0
3,900,699	+		IAI47_18325	0.72	-1.6
3,900,699	+		IAI47_18325	0.72	-1.7
3,900,699	+		IAI47_18325	0.72	-0.9
3,900,699	+		IAI47_18325	0.72	-1.1
3,900,699	+		IAI47_18325	0.72	-1.7
3,900,700	-		IAI47_18325	0.72	+0.9
3,900,700	-		IAI47_18325	0.72	+1.5
3,900,700	-		IAI47_18325	0.72	+0.2
3,900,705	+		IAI47_18325	0.73	-0.7
3,900,705	+		IAI47_18325	0.73	-0.7
3,900,705	+		IAI47_18325	0.73	-1.7
3,900,705	+		IAI47_18325	0.73	+1.3
3,900,705	+		IAI47_18325	0.73	+2.2
3,900,705	+		IAI47_18325	0.73	-0.4
3,900,705	+		IAI47_18325	0.73	+0.9
3,900,705	+		IAI47_18325	0.73	+2.5
3,900,706	-		IAI47_18325	0.73	-0.6
3,900,706	-		IAI47_18325	0.73	+0.2
3,900,726	+		IAI47_18325	0.75	+0.3
3,900,726	+		IAI47_18325	0.75	+0.4
3,900,727	-		IAI47_18325	0.75	+1.5
3,900,727	-		IAI47_18325	0.75	-1.1
3,900,727	-		IAI47_18325	0.75	-1.0
3,900,727	-		IAI47_18325	0.75	+1.3
3,900,727	-		IAI47_18325	0.75	+0.7
3,900,727	-		IAI47_18325	0.75	-0.5
3,900,727	-		IAI47_18325	0.75	-2.5
3,900,727	-		IAI47_18325	0.75	-0.8
3,900,760	+		IAI47_18325	0.79	-1.5
3,900,760	+		IAI47_18325	0.79	+0.6
3,900,760	+		IAI47_18325	0.79	-0.2
3,900,760	+		IAI47_18325	0.79	+1.2
3,900,760	+		IAI47_18325	0.79	+1.8
3,900,760	+		IAI47_18325	0.79	+1.1
3,900,760	+		IAI47_18325	0.79	-0.8
3,900,760	+		IAI47_18325	0.79	+2.5
3,900,760	+		IAI47_18325	0.79	-1.1
3,900,760	+		IAI47_18325	0.79	+0.2
3,900,760	+		IAI47_18325	0.79	+0.4
3,900,760	+		IAI47_18325	0.79	-1.5
3,900,760	+		IAI47_18325	0.79	-0.8
3,900,761	-		IAI47_18325	0.79	-0.2
3,900,761	-		IAI47_18325	0.79	+0.3
3,900,761	-		IAI47_18325	0.79	-0.4
3,900,761	-		IAI47_18325	0.79	-1.3
3,900,761	-		IAI47_18325	0.79	+0.7
3,900,761	-		IAI47_18325	0.79	-1.2
3,900,761	-		IAI47_18325	0.79	+1.4
3,900,761	-		IAI47_18325	0.79	+0.5
3,900,762	+		IAI47_18325	0.79	-1.4
3,900,762	+		IAI47_18325	0.79	+1.9
3,900,762	+		IAI47_18325	0.79	-1.0
3,900,762	+		IAI47_18325	0.79	-1.0
3,900,762	+		IAI47_18325	0.79	-0.9
3,900,762	+		IAI47_18325	0.79	+0.2
3,900,762	+		IAI47_18325	0.79	+1.8
3,900,762	+		IAI47_18325	0.79	+0.6
3,900,762	+		IAI47_18325	0.79	-0.7
3,900,762	+		IAI47_18325	0.79	+0.4
3,900,763	-		IAI47_18325	0.79	-0.1
3,900,763	-		IAI47_18325	0.79	-1.7
3,900,763	-		IAI47_18325	0.79	-0.3
3,900,763	-		IAI47_18325	0.79	+0.2
3,900,763	-		IAI47_18325	0.79	+1.8
3,900,763	-		IAI47_18325	0.79	-2.0
3,900,763	-		IAI47_18325	0.79	-0.4
3,900,763	-		IAI47_18325	0.79	+0.9
3,900,863	+				-2.1
3,900,879	+				-0.5
3,900,879	+				-0.3
3,900,922	+				-1.0
3,900,922	+				+4.0
3,900,922	+				+0.1
3,900,922	+				-0.1
3,900,923	-				+1.0
3,900,925	+				-1.5
3,900,925	+				+1.2
3,900,925	+				+1.6
3,900,925	+				+0.2
3,900,925	+				-1.7
3,900,925	+				+1.1
3,900,926	-				-0.6
3,900,926	-				-1.0
3,900,926	-				-0.0
3,900,926	-				-0.7
3,900,926	-				+1.2
3,900,975	-				+0.9
3,901,001	-				+0.0
3,901,001	-				-0.1
3,901,062	-				+1.8
3,901,067	+				+0.2
3,901,068	-				-0.2
3,901,097	+				+0.4
3,901,098	-				-1.7
3,901,098	-				+0.5
3,901,098	-				+1.2
3,901,106	+				-0.4
3,901,106	+				-0.1
3,901,138	+				-1.3
3,901,139	-				-0.4
3,901,189	+				-1.3
3,901,189	+				-0.5
3,901,190	-				+2.5
3,901,190	-				-0.8
3,901,190	-				-1.1
3,901,203	+				+1.1
3,901,203	+				-1.5
3,901,203	+				+2.5
3,901,203	+				+0.4
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