Strain Fitness in Pantoea sp. MT58 around IAI47_16955

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,596,807	+		IAI47_16940	0.80	-0.5
3,596,807	+		IAI47_16940	0.80	+0.6
3,596,808	-		IAI47_16940	0.80	-0.1
3,596,808	-		IAI47_16940	0.80	-0.3
3,596,821	+		IAI47_16940	0.83	+1.4
3,596,821	+		IAI47_16940	0.83	+1.6
3,596,821	+		IAI47_16940	0.83	+1.9
3,596,822	-		IAI47_16940	0.83	-1.3
3,596,831	+		IAI47_16940	0.85	-0.4
3,596,864	-				+0.8
3,596,874	-				-2.5
3,596,992	+		IAI47_16945	0.11	+1.7
3,596,992	+		IAI47_16945	0.11	-1.0
3,596,993	-		IAI47_16945	0.11	+1.6
3,596,993	-		IAI47_16945	0.11	-1.3
3,597,115	+		IAI47_16945	0.40	-0.2
3,597,116	-		IAI47_16945	0.40	+0.7
3,597,130	-		IAI47_16945	0.43	+1.6
3,597,144	-		IAI47_16945	0.46	-1.2
3,597,144	-		IAI47_16945	0.46	-2.6
3,597,273	+		IAI47_16945	0.76	+1.5
3,597,273	+		IAI47_16945	0.76	-0.0
3,597,273	+		IAI47_16945	0.76	+0.0
3,597,273	+		IAI47_16945	0.76	+0.2
3,597,273	+		IAI47_16945	0.76	-0.7
3,597,273	+		IAI47_16945	0.76	-0.4
3,597,273	+		IAI47_16945	0.76	-2.0
3,597,273	+		IAI47_16945	0.76	-0.6
3,597,273	+		IAI47_16945	0.76	+0.1
3,597,274	-		IAI47_16945	0.77	+0.8
3,597,274	-		IAI47_16945	0.77	+0.5
3,597,274	-		IAI47_16945	0.77	-1.3
3,597,274	-		IAI47_16945	0.77	+0.1
3,597,276	+		IAI47_16945	0.77	+0.1
3,597,276	+		IAI47_16945	0.77	-0.9
3,597,276	+		IAI47_16945	0.77	-0.4
3,597,276	+		IAI47_16945	0.77	+0.5
3,597,277	-		IAI47_16945	0.77	+1.0
3,597,277	-		IAI47_16945	0.77	+0.3
3,597,277	-		IAI47_16945	0.77	-0.2
3,597,277	-		IAI47_16945	0.77	-0.8
3,597,277	-		IAI47_16945	0.77	-3.2
3,597,277	-		IAI47_16945	0.77	-0.8
3,597,283	+		IAI47_16945	0.79	-0.3
3,597,284	-		IAI47_16945	0.79	-0.7
3,597,310	+		IAI47_16945	0.85	-2.9
3,597,376	+				+0.4
3,597,376	+				+0.6
3,597,376	+				-0.2
3,597,376	+				-1.0
3,597,377	-				+1.9
3,597,377	-				-0.2
3,597,377	-				-1.7
3,597,377	-				+0.6
3,597,377	-				-1.7
3,597,412	+				-1.1
3,597,413	-				+0.1
3,597,413	-				+1.4
3,597,470	+				-2.3
3,597,470	+				-0.4
3,597,470	+				+0.2
3,597,471	-				-2.2
3,597,471	-				+2.3
3,597,471	-				-1.4
3,597,500	+		IAI47_16950	0.17	-1.8
3,597,500	+		IAI47_16950	0.17	-0.5
3,597,501	-		IAI47_16950	0.18	+0.6
3,597,501	-		IAI47_16950	0.18	-0.6
3,597,644	+		IAI47_16950	0.66	+1.4
3,597,644	+		IAI47_16950	0.66	+0.1
3,597,644	+		IAI47_16950	0.66	-1.4
3,597,645	-		IAI47_16950	0.67	+1.1
3,597,653	-		IAI47_16950	0.69	-0.9
3,597,678	+		IAI47_16950	0.78	-0.2
3,597,678	+		IAI47_16950	0.78	-0.9
3,597,679	-		IAI47_16950	0.78	-1.0
3,597,679	-		IAI47_16950	0.78	-0.4
3,597,724	+				-0.8
3,597,724	+				-1.9
3,597,725	-				-0.6
3,597,727	+				-1.6
3,597,727	+				-1.3
3,597,727	+				+0.1
3,597,728	-				-1.2
3,597,728	-				+1.5
3,597,728	-				-0.7
3,597,728	-				+0.7
3,597,728	-				-0.1
3,597,740	+				-0.3
3,597,740	+				+0.8
3,597,755	-				+2.9
3,597,781	+		IAI47_16955	0.11	-1.1
3,597,781	+		IAI47_16955	0.11	+1.2
3,597,781	+		IAI47_16955	0.11	-1.4
3,597,781	+		IAI47_16955	0.11	+0.2
3,597,782	-		IAI47_16955	0.11	-1.3
3,597,782	-		IAI47_16955	0.11	+0.4
3,597,782	-		IAI47_16955	0.11	+0.0
3,597,802	+		IAI47_16955	0.15	-3.1
3,597,802	+		IAI47_16955	0.15	+2.6
3,597,803	-		IAI47_16955	0.15	-0.8
3,597,803	-		IAI47_16955	0.15	+0.5
3,597,803	-		IAI47_16955	0.15	-0.6
3,597,803	-		IAI47_16955	0.15	+0.5
3,597,850	+		IAI47_16955	0.24	+0.4
3,597,919	+		IAI47_16955	0.38	-0.5
3,597,919	+		IAI47_16955	0.38	+0.2
3,597,952	+		IAI47_16955	0.45	-1.3
3,597,953	-		IAI47_16955	0.45	-2.3
3,597,953	-		IAI47_16955	0.45	-0.6
3,597,953	-		IAI47_16955	0.45	-0.7
3,597,953	-		IAI47_16955	0.45	+0.3
3,597,984	+		IAI47_16955	0.51	-0.8
3,598,067	-		IAI47_16955	0.67	-0.3
3,598,067	-		IAI47_16955	0.67	+2.9
3,598,334	-		IAI47_16960	0.21	-1.7
3,598,334	-		IAI47_16960	0.21	-0.2
3,598,334	-		IAI47_16960	0.21	-1.6
3,598,334	-		IAI47_16960	0.21	+1.2
3,598,348	+		IAI47_16960	0.23	-1.0
3,598,348	+		IAI47_16960	0.23	-0.0
3,598,349	-		IAI47_16960	0.23	+0.6
3,598,349	-		IAI47_16960	0.23	+1.2
3,598,349	-		IAI47_16960	0.23	-1.9
3,598,358	+		IAI47_16960	0.25	-1.0
3,598,358	+		IAI47_16960	0.25	-1.6
3,598,358	+		IAI47_16960	0.25	+1.4
3,598,358	+		IAI47_16960	0.25	-1.2
3,598,359	-		IAI47_16960	0.25	-0.4
3,598,359	-		IAI47_16960	0.25	-1.4
3,598,359	-		IAI47_16960	0.25	-1.3
3,598,426	+		IAI47_16960	0.38	-0.4
3,598,426	+		IAI47_16960	0.38	+1.0
3,598,426	+		IAI47_16960	0.38	+0.6
3,598,441	+		IAI47_16960	0.41	-2.2
3,598,441	+		IAI47_16960	0.41	-0.6
3,598,441	+		IAI47_16960	0.41	-1.1
3,598,441	+		IAI47_16960	0.41	+0.5
3,598,441	+		IAI47_16960	0.41	-1.1
3,598,441	+		IAI47_16960	0.41	+0.1
3,598,442	-		IAI47_16960	0.41	-1.5
3,598,442	-		IAI47_16960	0.41	+1.9
3,598,442	-		IAI47_16960	0.41	-2.1
3,598,442	-		IAI47_16960	0.41	+0.2
3,598,511	+		IAI47_16960	0.54	-0.9
3,598,601	+		IAI47_16960	0.71	+0.7
3,598,602	-		IAI47_16960	0.72	-2.6
3,598,640	+		IAI47_16960	0.79	-0.2
3,598,640	+		IAI47_16960	0.79	+0.4
3,598,640	+		IAI47_16960	0.79	-0.5
3,598,641	-		IAI47_16960	0.79	-0.4
3,598,737	-				-1.5
3,598,737	-				+1.0
3,598,745	+				-0.0
3,598,780	+				-0.5
3,598,780	+				+0.3
3,598,780	+				-0.2
3,598,780	+				-0.9
3,598,780	+				+0.6
3,598,780	+				-1.2
3,598,781	-				-0.8
3,598,781	-				+2.3
3,598,781	-				-0.9
3,598,781	-				-2.1
3,598,781	-				+0.4
3,598,781	-				-3.0
3,598,781	-				-0.8
3,598,782	+				-0.5
3,598,782	+				+1.3
3,598,783	-				+1.3
3,598,783	-				-0.9
3,598,783	-				-0.5
3,598,791	-				-0.0
3,598,862	-				-0.6
3,598,918	+				+0.4
3,598,918	+				-0.9
3,598,919	-				-0.3
3,598,919	-				+0.4
3,598,954	+				+0.9
3,598,954	+				-0.3
3,598,954	+				+2.9
3,598,954	+				+1.2
3,598,954	+				-1.0
3,598,954	+				+1.4
3,598,954	+				+1.6
3,598,954	+				-0.2
3,598,955	-				-2.1
3,598,955	-				-0.5
3,598,955	-				-1.4
3,598,955	-				-0.8
3,598,955	-				+0.8
3,598,955	-				+0.6
3,598,955	-				-1.3
3,598,955	-				+1.9
3,598,955	-				-1.7
3,598,955	-				+0.2
3,598,955	-				-1.5
3,598,955	-				-0.4
3,599,027	+				-0.5
3,599,027	+				+0.8
3,599,027	+				+1.4
3,599,027	+				+0.9
3,599,027	+				+0.8
3,599,027	+				-0.1
3,599,028	-				-1.4
3,599,028	-				+0.1
3,599,028	-				-2.4
3,599,028	-				+0.4
3,599,028	-				-0.7
3,599,028	-				+0.2
3,599,028	-				+1.8
3,599,028	-				-1.9
3,599,028	-				-0.9
3,599,086	+		IAI47_16965	0.13	+0.3
3,599,087	-		IAI47_16965	0.13	+0.1
3,599,111	+		IAI47_16965	0.16	+0.1
3,599,111	+		IAI47_16965	0.16	+0.6
3,599,149	+		IAI47_16965	0.19	+0.4
3,599,150	-		IAI47_16965	0.20	-0.8
3,599,150	-		IAI47_16965	0.20	-3.0
3,599,173	+		IAI47_16965	0.22	+0.7
3,599,174	-		IAI47_16965	0.22	-1.1
3,599,174	-		IAI47_16965	0.22	-1.2
3,599,203	-		IAI47_16965	0.25	-0.7
3,599,203	-		IAI47_16965	0.25	+0.9