Strain Fitness in Pantoea sp. MT58 around IAI47_15700

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,309,121	+		IAI47_15695	0.31	-0.3
3,309,121	+		IAI47_15695	0.31	-1.2
3,309,122	-		IAI47_15695	0.31	+0.0
3,309,122	-		IAI47_15695	0.31	+0.0
3,309,195	+		IAI47_15695	0.36	+1.3
3,309,196	-		IAI47_15695	0.36	-1.1
3,309,196	-		IAI47_15695	0.36	-0.6
3,309,304	-		IAI47_15695	0.45	+2.4
3,309,322	-		IAI47_15695	0.46	+1.7
3,309,428	+		IAI47_15695	0.55	-1.0
3,309,429	-		IAI47_15695	0.55	+0.9
3,309,429	-		IAI47_15695	0.55	-0.9
3,309,437	-		IAI47_15695	0.55	+1.1
3,309,451	+		IAI47_15695	0.56	-0.4
3,309,451	+		IAI47_15695	0.56	-0.2
3,309,451	+		IAI47_15695	0.56	-1.0
3,309,451	+		IAI47_15695	0.56	-0.9
3,309,451	+		IAI47_15695	0.56	+2.2
3,309,451	+		IAI47_15695	0.56	+1.7
3,309,451	+		IAI47_15695	0.56	-1.0
3,309,451	+		IAI47_15695	0.56	+0.2
3,309,451	+		IAI47_15695	0.56	-1.5
3,309,451	+		IAI47_15695	0.56	+0.5
3,309,452	-		IAI47_15695	0.56	-0.8
3,309,452	-		IAI47_15695	0.56	-2.1
3,309,452	-		IAI47_15695	0.56	-1.8
3,309,452	-		IAI47_15695	0.56	+0.7
3,309,452	-		IAI47_15695	0.56	-1.2
3,309,452	-		IAI47_15695	0.56	+0.5
3,309,452	-		IAI47_15695	0.56	-1.3
3,309,452	-		IAI47_15695	0.56	-0.2
3,309,452	-		IAI47_15695	0.56	+1.0
3,309,455	+		IAI47_15695	0.57	-0.4
3,309,455	+		IAI47_15695	0.57	+1.4
3,309,455	+		IAI47_15695	0.57	-0.2
3,309,455	+		IAI47_15695	0.57	-2.2
3,309,455	+		IAI47_15695	0.57	-0.8
3,309,455	+		IAI47_15695	0.57	-0.2
3,309,455	+		IAI47_15695	0.57	-1.0
3,309,456	-		IAI47_15695	0.57	+2.4
3,309,456	-		IAI47_15695	0.57	+1.1
3,309,474	+		IAI47_15695	0.58	-1.3
3,309,474	+		IAI47_15695	0.58	+0.6
3,309,474	+		IAI47_15695	0.58	-2.8
3,309,474	+		IAI47_15695	0.58	+0.4
3,309,498	+		IAI47_15695	0.60	-0.6
3,309,498	+		IAI47_15695	0.60	+1.6
3,309,498	+		IAI47_15695	0.60	+0.2
3,309,498	+		IAI47_15695	0.60	-1.9
3,309,576	+		IAI47_15695	0.66	-0.1
3,309,577	-		IAI47_15695	0.66	+1.9
3,309,577	-		IAI47_15695	0.66	+0.4
3,309,577	-		IAI47_15695	0.66	-0.2
3,309,686	+		IAI47_15695	0.75	-2.3
3,309,687	-		IAI47_15695	0.75	+2.5
3,309,691	+		IAI47_15695	0.75	-0.8
3,309,691	+		IAI47_15695	0.75	-0.4
3,309,691	+		IAI47_15695	0.75	-0.4
3,309,692	-		IAI47_15695	0.75	-0.4
3,309,692	-		IAI47_15695	0.75	+0.8
3,309,692	-		IAI47_15695	0.75	-1.2
3,309,724	+		IAI47_15695	0.78	+1.5
3,309,724	+		IAI47_15695	0.78	-1.9
3,309,724	+		IAI47_15695	0.78	-0.3
3,309,724	+		IAI47_15695	0.78	-1.2
3,309,725	-		IAI47_15695	0.78	+0.8
3,309,725	-		IAI47_15695	0.78	-0.7
3,309,725	-		IAI47_15695	0.78	+2.4
3,309,768	+		IAI47_15695	0.81	+0.4
3,309,769	-		IAI47_15695	0.81	+0.2
3,309,822	+		IAI47_15695	0.85	+0.2
3,309,822	+		IAI47_15695	0.85	-1.3
3,309,823	-		IAI47_15695	0.85	+0.2
3,309,823	-		IAI47_15695	0.85	-1.1
3,309,823	-		IAI47_15695	0.85	+0.7
3,309,823	-		IAI47_15695	0.85	-1.2
3,309,876	+		IAI47_15695	0.89	+0.1
3,309,876	+		IAI47_15695	0.89	-0.8
3,309,876	+		IAI47_15695	0.89	+0.0
3,309,877	-		IAI47_15695	0.89	-0.5
3,309,915	+				-1.2
3,309,915	+				+1.8
3,309,915	+				-1.2
3,309,915	+				+0.4
3,309,915	+				-0.9
3,309,916	-				+0.1
3,309,916	-				-1.1
3,309,921	+				-0.5
3,309,922	-				-2.0
3,309,922	-				-3.0
3,310,009	+				-1.7
3,310,009	+				-1.2
3,310,009	+				+1.2
3,310,010	-				+0.4
3,310,010	-				-1.4
3,310,023	+				+1.1
3,310,023	+				-0.8
3,310,044	+				-1.0
3,310,045	-				-0.2
3,310,045	-				+1.0
3,310,079	+				+1.1
3,310,079	+				-0.1
3,310,079	+				-0.4
3,310,079	+				-1.5
3,310,079	+				+2.1
3,310,079	+				-0.3
3,310,079	+				+1.5
3,310,079	+				-0.8
3,310,079	+				-0.5
3,310,079	+				+0.5
3,310,079	+				+0.8
3,310,079	+				+0.9
3,310,079	+				-1.3
3,310,079	+				+0.8
3,310,079	+				-0.1
3,310,079	+				+0.6
3,310,079	+				+0.0
3,310,079	+				-1.1
3,310,079	+				+1.0
3,310,080	-				+0.8
3,310,080	-				+1.0
3,310,080	-				-1.2
3,310,080	-				-1.4
3,310,080	-				+0.9
3,310,080	-				-0.4
3,310,080	-				-1.3
3,310,080	-				-0.4
3,310,080	-				+0.0
3,310,103	+				+2.4
3,310,103	+				-1.0
3,310,103	+				-0.9
3,310,104	-				+1.4
3,310,104	-				-2.3
3,310,104	-				+1.2
3,310,104	-				-0.8
3,310,104	-				-0.1
3,310,114	+				+2.3
3,310,152	+				-1.6
3,310,152	+				+0.8
3,310,152	+				+0.0
3,310,152	+				-0.4
3,310,152	+				+1.0
3,310,153	-				-1.5
3,310,153	-				-1.7
3,310,153	-				-0.8
3,310,153	-				+1.5
3,310,153	-				+0.9
3,310,153	-				-0.2
3,310,153	-				-0.2
3,310,207	-		IAI47_15700	0.12	+0.4
3,310,207	-		IAI47_15700	0.12	-1.7
3,310,281	-		IAI47_15700	0.17	+0.7
3,310,401	+		IAI47_15700	0.24	+0.2
3,310,401	+		IAI47_15700	0.24	-0.1
3,310,401	+		IAI47_15700	0.24	+0.7
3,310,401	+		IAI47_15700	0.24	+0.0
3,310,402	-		IAI47_15700	0.24	-1.2
3,310,402	-		IAI47_15700	0.24	+1.4
3,310,402	-		IAI47_15700	0.24	-0.6
3,310,420	-		IAI47_15700	0.25	+0.1
3,310,764	+		IAI47_15700	0.47	-0.8
3,310,765	-		IAI47_15700	0.47	-1.3
3,310,765	-		IAI47_15700	0.47	-2.1
3,310,765	-		IAI47_15700	0.47	+0.1
3,310,765	-		IAI47_15700	0.47	-1.2
3,310,765	-		IAI47_15700	0.47	-1.0
3,310,765	-		IAI47_15700	0.47	-2.1
3,310,765	-		IAI47_15700	0.47	-0.0
3,310,774	+		IAI47_15700	0.47	-1.0
3,310,819	+		IAI47_15700	0.50	-0.6
3,310,857	+		IAI47_15700	0.52	+0.4
3,310,857	+		IAI47_15700	0.52	-0.6
3,310,857	+		IAI47_15700	0.52	+0.6
3,310,857	+		IAI47_15700	0.52	-0.4
3,310,858	-		IAI47_15700	0.52	-0.8
3,310,858	-		IAI47_15700	0.52	+0.4
3,310,858	-		IAI47_15700	0.52	+1.4
3,310,858	-		IAI47_15700	0.52	+0.8
3,310,859	+		IAI47_15700	0.52	+1.0
3,310,859	+		IAI47_15700	0.52	-1.4
3,310,859	+		IAI47_15700	0.52	+1.0
3,310,859	+		IAI47_15700	0.52	+4.4
3,310,859	+		IAI47_15700	0.52	+1.2
3,310,859	+		IAI47_15700	0.52	-0.2
3,310,859	+		IAI47_15700	0.52	-0.3
3,310,859	+		IAI47_15700	0.52	+0.3
3,310,859	+		IAI47_15700	0.52	-0.8
3,310,859	+		IAI47_15700	0.52	-0.3
3,310,860	-		IAI47_15700	0.53	-0.2
3,310,860	-		IAI47_15700	0.53	+1.8
3,310,860	-		IAI47_15700	0.53	+0.3
3,310,860	-		IAI47_15700	0.53	-0.7
3,310,860	-		IAI47_15700	0.53	-0.4
3,310,860	-		IAI47_15700	0.53	-2.0
3,310,860	-		IAI47_15700	0.53	-3.2
3,310,860	-		IAI47_15700	0.53	+1.3
3,310,872	+		IAI47_15700	0.53	-0.9
3,310,872	+		IAI47_15700	0.53	-1.7
3,310,873	-		IAI47_15700	0.53	-2.6
3,310,873	-		IAI47_15700	0.53	-2.0
3,310,905	+		IAI47_15700	0.55	-0.4
3,310,962	-		IAI47_15700	0.59	-0.8
3,311,030	+		IAI47_15700	0.63	-0.3
3,311,037	+		IAI47_15700	0.64	+0.6
3,311,038	-		IAI47_15700	0.64	+0.8
3,311,064	+		IAI47_15700	0.65	+0.8
3,311,065	-		IAI47_15700	0.65	-2.2
3,311,065	-		IAI47_15700	0.65	-1.9
3,311,188	-		IAI47_15700	0.73	-1.3
3,311,188	-		IAI47_15700	0.73	-0.7
3,311,188	-		IAI47_15700	0.73	+2.4
3,311,207	+		IAI47_15700	0.74	+0.7
3,311,207	+		IAI47_15700	0.74	+0.5
3,311,208	-		IAI47_15700	0.74	-1.3
3,311,208	-		IAI47_15700	0.74	+0.8
3,311,208	-		IAI47_15700	0.74	-0.3
3,311,238	+		IAI47_15700	0.76	-0.3
3,311,238	+		IAI47_15700	0.76	+0.4
3,311,239	-		IAI47_15700	0.76	-0.5
3,311,353	-		IAI47_15700	0.83	+4.7
3,311,354	+		IAI47_15700	0.83	+0.5
3,311,354	+		IAI47_15700	0.83	-0.6
3,311,354	+		IAI47_15700	0.83	-1.1
3,311,354	+		IAI47_15700	0.83	-0.1
3,311,354	+		IAI47_15700	0.83	+1.4
3,311,354	+		IAI47_15700	0.83	-0.2
3,311,354	+		IAI47_15700	0.83	-1.3
3,311,354	+		IAI47_15700	0.83	+0.2
3,311,354	+		IAI47_15700	0.83	-2.6
3,311,355	-		IAI47_15700	0.83	+2.1
3,311,355	-		IAI47_15700	0.83	-1.0
3,311,355	-		IAI47_15700	0.83	+3.7
3,311,355	-		IAI47_15700	0.83	+1.6
3,311,376	+		IAI47_15700	0.85	+0.2
3,311,418	+		IAI47_15700	0.87	-0.2
3,311,420	+		IAI47_15700	0.87	+0.1
3,311,420	+		IAI47_15700	0.87	-1.1
3,311,420	+		IAI47_15700	0.87	+0.1
3,311,420	+		IAI47_15700	0.87	+0.5
3,311,421	-		IAI47_15700	0.87	-1.6
3,311,421	-		IAI47_15700	0.87	+0.0
3,311,483	+				-1.5
3,311,483	+				-1.5
3,311,483	+				+2.6
3,311,483	+				-0.8
3,311,484	-				+0.2
3,311,484	-				-0.3
3,311,484	-				-1.1
3,311,484	-				-2.6
3,311,484	-				-0.4
3,311,661	-				-1.1
3,311,745	-				+1.8
3,311,745	-				+1.3
3,311,762	+				+1.7
3,311,762	+				-0.2
3,311,762	+				+1.6
3,311,762	+				+2.4
3,311,762	+				-1.5
3,311,763	-				-0.3
3,311,763	-				-1.3
3,311,763	-				+0.2
3,311,763	-				-1.3
3,311,763	-				+1.7
3,311,763	-				+0.0
3,311,771	+				-0.5
3,311,771	+				+1.4
3,311,772	-				+0.4
3,311,786	+				+2.5
3,311,786	+				-1.4
3,311,787	-				-2.8
3,311,787	-				+0.6
3,311,787	-				+1.6
3,311,806	+				+0.0
3,311,806	+				+0.6
3,311,806	+				+0.2
3,311,806	+				+0.1
3,311,807	-				+0.1
3,311,807	-				-0.9
3,311,807	-				+0.2
3,311,807	-				-1.2
3,311,807	-				-0.4
3,311,818	+				+0.2
3,311,818	+				-1.1
3,311,818	+				-1.4
3,311,819	-				+1.6
3,311,924	+		IAI47_15705	0.34	-1.3
3,312,015	+		IAI47_15705	0.60	+0.9
3,312,015	+		IAI47_15705	0.60	+0.3
3,312,019	+		IAI47_15705	0.61	-1.3
3,312,020	-		IAI47_15705	0.61	-0.4
3,312,023	+		IAI47_15705	0.62	+1.8
3,312,023	+		IAI47_15705	0.62	+0.8
3,312,023	+		IAI47_15705	0.62	-1.7
3,312,024	-		IAI47_15705	0.62	-2.0
3,312,024	-		IAI47_15705	0.62	+0.1
3,312,024	-		IAI47_15705	0.62	+3.1
3,312,032	+		IAI47_15705	0.65	-0.5
3,312,032	+		IAI47_15705	0.65	-1.1
3,312,032	+		IAI47_15705	0.65	+0.9
3,312,032	+		IAI47_15705	0.65	-0.9
3,312,032	+		IAI47_15705	0.65	-0.4
3,312,032	+		IAI47_15705	0.65	-0.8
3,312,032	+		IAI47_15705	0.65	-2.0
3,312,033	-		IAI47_15705	0.65	-0.4
3,312,033	-		IAI47_15705	0.65	-0.7
3,312,033	-		IAI47_15705	0.65	+0.0
3,312,033	-		IAI47_15705	0.65	-1.0
3,312,033	-		IAI47_15705	0.65	-0.5
3,312,033	-		IAI47_15705	0.65	+0.6
3,312,058	+		IAI47_15705	0.72	-1.1
3,312,058	+		IAI47_15705	0.72	-0.2
3,312,058	+		IAI47_15705	0.72	-1.0
3,312,058	+		IAI47_15705	0.72	+1.8
3,312,058	+		IAI47_15705	0.72	+0.0
3,312,058	+		IAI47_15705	0.72	+0.3
3,312,058	+		IAI47_15705	0.72	+1.5
3,312,059	-		IAI47_15705	0.72	+0.4
3,312,059	-		IAI47_15705	0.72	-0.6
3,312,059	-		IAI47_15705	0.72	+0.4
3,312,059	-		IAI47_15705	0.72	+0.0
3,312,059	-		IAI47_15705	0.72	+0.0
3,312,059	-		IAI47_15705	0.72	-1.2
3,312,059	-		IAI47_15705	0.72	-1.0
3,312,062	+		IAI47_15705	0.73	-0.6
3,312,062	+		IAI47_15705	0.73	+1.9
3,312,063	-		IAI47_15705	0.74	+0.0
3,312,097	+		IAI47_15705	0.83	+1.0
3,312,106	+		IAI47_15705	0.86	+3.4
3,312,107	-		IAI47_15705	0.86	-0.6
3,312,143	+				+0.1
3,312,143	+				-0.8
3,312,143	+				-0.9
3,312,152	+				+1.4
3,312,152	+				-1.1
3,312,152	+				-0.3
3,312,153	-				-0.5
3,312,153	-				-0.4
3,312,153	-				+1.1
3,312,205	+				-1.9
3,312,205	+				+0.3
3,312,205	+				+0.2
3,312,205	+				+0.6
3,312,205	+				-0.4
3,312,205	+				+1.8
3,312,205	+				-0.8
3,312,205	+				+1.2
3,312,206	-				+1.2
3,312,206	-				-1.0
3,312,206	-				-0.8
3,312,206	-				-0.9
3,312,206	-				-1.0
3,312,206	-				+1.7
3,312,206	-				-1.1
3,312,209	+				-0.5
3,312,209	+				-1.1
3,312,209	+				+0.8
3,312,209	+				-1.0
3,312,209	+				-1.0
3,312,209	+				+0.4
3,312,209	+				+0.4
3,312,209	+				-1.5
3,312,209	+				-0.2
3,312,209	+				-0.2
3,312,209	+				-1.1
3,312,209	+				-1.1
3,312,210	-				-1.2
3,312,210	-				-0.6
3,312,210	-				-1.0
3,312,210	-				+0.8
3,312,210	-				-1.3
3,312,210	-				-1.6
3,312,210	-				+0.2
3,312,210	-				-0.7
3,312,210	-				-2.4
3,312,210	-				+0.0
3,312,278	+				+0.4
3,312,278	+				+0.5
3,312,278	+				-2.4
3,312,279	-				+0.4
3,312,309	-				-0.1
3,312,309	-				+0.5
3,312,309	-				-1.4
3,312,309	-				+0.1
3,312,319	-				+0.8
3,312,333	-				-2.3
3,312,360	+		IAI47_15710	0.12	-0.4
3,312,361	-		IAI47_15710	0.12	-1.4
3,312,394	+		IAI47_15710	0.16	+3.4
3,312,394	+		IAI47_15710	0.16	-2.4
3,312,394	+		IAI47_15710	0.16	-0.2
3,312,394	+		IAI47_15710	0.16	-0.0
3,312,439	+		IAI47_15710	0.21	-1.0
3,312,439	+		IAI47_15710	0.21	+2.4
3,312,439	+		IAI47_15710	0.21	-0.8
3,312,440	-		IAI47_15710	0.21	-1.1
3,312,443	+		IAI47_15710	0.22	-0.6
3,312,443	+		IAI47_15710	0.22	-0.1
3,312,540	+		IAI47_15710	0.33	+1.4
3,312,540	+		IAI47_15710	0.33	-2.0
3,312,540	+		IAI47_15710	0.33	-0.7
3,312,540	+		IAI47_15710	0.33	-0.9
3,312,541	-		IAI47_15710	0.33	-1.1
3,312,568	+		IAI47_15710	0.36	-0.2
3,312,569	-		IAI47_15710	0.36	+1.5
3,312,571	+		IAI47_15710	0.36	+0.8
3,312,571	+		IAI47_15710	0.36	+0.7
3,312,571	+		IAI47_15710	0.36	+0.4
3,312,571	+		IAI47_15710	0.36	+0.4
3,312,571	+		IAI47_15710	0.36	+0.0
3,312,571	+		IAI47_15710	0.36	+0.4
3,312,571	+		IAI47_15710	0.36	+0.5
3,312,572	-		IAI47_15710	0.36	-1.2
3,312,572	-		IAI47_15710	0.36	-0.4
3,312,572	-		IAI47_15710	0.36	-0.8
3,312,572	-		IAI47_15710	0.36	+1.9
3,312,572	-		IAI47_15710	0.36	-1.3
3,312,572	-		IAI47_15710	0.36	-1.1
3,312,572	-		IAI47_15710	0.36	-1.1
3,312,597	+		IAI47_15710	0.39	+3.7
3,312,614	+		IAI47_15710	0.41	-0.0
3,312,614	+		IAI47_15710	0.41	-0.7
3,312,615	-		IAI47_15710	0.41	-3.3
3,312,615	-		IAI47_15710	0.41	+0.4
3,312,615	-		IAI47_15710	0.41	-1.1