Strain Fitness in Pantoea sp. MT58 around IAI47_11325

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,391,429	+				-0.3
2,391,430	-				-0.6
2,391,450	+				+1.8
2,391,450	+				-0.6
2,391,450	+				-1.4
2,391,450	+				-0.9
2,391,450	+				-0.4
2,391,450	+				-0.0
2,391,450	+				-0.4
2,391,450	+				+0.6
2,391,450	+				-0.3
2,391,450	+				-0.4
2,391,450	+				-2.4
2,391,451	-				-1.0
2,391,451	-				-0.1
2,391,451	-				-1.0
2,391,451	-				-0.4
2,391,451	-				-1.1
2,391,451	-				+1.2
2,391,451	-				+0.7
2,391,451	-				+0.6
2,391,451	-				-1.7
2,391,452	+				-1.7
2,391,453	-				+0.1
2,391,475	+				+0.6
2,391,475	+				-0.2
2,391,475	+				+0.3
2,391,475	+				+0.9
2,391,476	-				+0.8
2,391,490	-				+1.0
2,391,546	+				-0.5
2,391,566	-				-0.1
2,391,592	+				-0.3
2,391,592	+				+0.2
2,391,592	+				+2.2
2,391,593	-				-0.6
2,391,593	-				+1.2
2,391,601	+				+1.9
2,391,602	-				-0.4
2,391,602	-				+0.8
2,391,611	+				+1.2
2,391,622	+				-0.3
2,391,622	+				-0.6
2,391,639	+				-0.4
2,391,639	+				+0.3
2,391,639	+				-0.7
2,391,639	+				-0.1
2,391,640	-				-0.2
2,391,640	-				+2.2
2,391,640	-				-0.4
2,391,640	-				+2.8
2,391,673	+				-2.7
2,391,735	+		IAI47_11320	0.16	+1.2
2,391,743	+		IAI47_11320	0.17	-1.0
2,391,743	+		IAI47_11320	0.17	-0.5
2,391,766	+		IAI47_11320	0.20	-0.9
2,391,767	-		IAI47_11320	0.20	+1.2
2,391,898	-		IAI47_11320	0.36	+0.7
2,391,907	+		IAI47_11320	0.37	-0.5
2,391,907	+		IAI47_11320	0.37	+1.2
2,391,907	+		IAI47_11320	0.37	+1.2
2,391,908	-		IAI47_11320	0.37	+1.2
2,391,908	-		IAI47_11320	0.37	+1.2
2,391,922	+		IAI47_11320	0.39	+1.2
2,391,923	-		IAI47_11320	0.39	+1.5
2,391,925	+		IAI47_11320	0.40	+0.0
2,391,926	-		IAI47_11320	0.40	-1.7
2,391,926	-		IAI47_11320	0.40	-0.1
2,391,945	+		IAI47_11320	0.42	+0.5
2,391,946	-		IAI47_11320	0.42	+0.8
2,392,006	+		IAI47_11320	0.49	-0.5
2,392,006	+		IAI47_11320	0.49	+0.2
2,392,006	+		IAI47_11320	0.49	+0.5
2,392,007	-		IAI47_11320	0.50	+0.0
2,392,007	-		IAI47_11320	0.50	-0.6
2,392,011	-		IAI47_11320	0.50	+1.9
2,392,037	+		IAI47_11320	0.53	+1.5
2,392,037	+		IAI47_11320	0.53	+0.8
2,392,037	+		IAI47_11320	0.53	-0.6
2,392,038	-		IAI47_11320	0.53	+0.6
2,392,038	-		IAI47_11320	0.53	-0.6
2,392,038	-		IAI47_11320	0.53	-1.3
2,392,038	-		IAI47_11320	0.53	+1.4
2,392,038	-		IAI47_11320	0.53	-0.4
2,392,040	+		IAI47_11320	0.54	-0.4
2,392,041	-		IAI47_11320	0.54	-0.5
2,392,041	-		IAI47_11320	0.54	+2.0
2,392,046	+		IAI47_11320	0.54	-1.1
2,392,047	-		IAI47_11320	0.54	-0.3
2,392,068	-		IAI47_11320	0.57	+1.0
2,392,073	+		IAI47_11320	0.58	-0.6
2,392,074	-		IAI47_11320	0.58	+0.6
2,392,074	-		IAI47_11320	0.58	-0.2
2,392,084	-		IAI47_11320	0.59	+0.1
2,392,149	+		IAI47_11320	0.67	-0.1
2,392,149	+		IAI47_11320	0.67	-0.4
2,392,149	+		IAI47_11320	0.67	+0.4
2,392,149	+		IAI47_11320	0.67	+0.9
2,392,149	+		IAI47_11320	0.67	+0.3
2,392,150	-		IAI47_11320	0.67	+2.2
2,392,150	-		IAI47_11320	0.67	-1.7
2,392,150	-		IAI47_11320	0.67	-1.9
2,392,150	-		IAI47_11320	0.67	+1.2
2,392,388	+				-0.6
2,392,388	+				-0.2
2,392,428	-				+2.0
2,392,428	-				-0.6
2,392,480	+				+0.0
2,392,481	-				-1.1
2,392,511	+				-0.5
2,392,512	-				+0.4
2,392,512	-				-1.1
2,392,636	-		IAI47_11325	0.21	-0.5
2,392,686	-		IAI47_11325	0.26	+0.3
2,392,841	+		IAI47_11325	0.41	-0.5
2,392,842	-		IAI47_11325	0.41	-0.6
2,392,877	+		IAI47_11325	0.44	+0.6
2,392,987	+		IAI47_11325	0.55	-1.3
2,392,993	+		IAI47_11325	0.55	+0.2
2,392,993	+		IAI47_11325	0.55	-2.1
2,392,994	-		IAI47_11325	0.55	-0.4
2,392,994	-		IAI47_11325	0.55	-0.7
2,393,081	-		IAI47_11325	0.64	-0.1
2,393,081	-		IAI47_11325	0.64	-2.2
2,393,125	+		IAI47_11325	0.68	+0.2
2,393,126	-		IAI47_11325	0.68	-1.4
2,393,152	+		IAI47_11325	0.70	-0.1
2,393,152	+		IAI47_11325	0.70	-1.1
2,393,152	+		IAI47_11325	0.70	-2.6
2,393,153	-		IAI47_11325	0.70	+1.2
2,393,153	-		IAI47_11325	0.70	+3.8
2,393,328	+		IAI47_11325	0.87	-0.1
2,393,328	+		IAI47_11325	0.87	-0.8
2,393,328	+		IAI47_11325	0.87	-1.8
2,393,328	+		IAI47_11325	0.87	-1.1
2,393,329	-		IAI47_11325	0.87	-0.4
2,393,329	-		IAI47_11325	0.87	-0.6
2,393,368	+				-0.2
2,393,369	-				+2.9
2,393,369	-				-0.4
2,393,369	-				+2.2
2,393,444	+				-0.6
2,393,444	+				-0.4
2,393,444	+				-0.5
2,393,445	-				+0.0
2,393,445	-				-0.6
2,393,445	-				+1.2
2,393,445	-				+2.2
2,393,445	-				+0.8
2,393,454	+				-1.3
2,393,454	+				+1.6
2,393,454	+				+1.6
2,393,455	-				-0.8
2,393,491	-				+0.2
2,393,557	+		IAI47_11330	0.11	+1.9
2,393,557	+		IAI47_11330	0.11	+0.2
2,393,557	+		IAI47_11330	0.11	+0.6
2,393,558	-		IAI47_11330	0.11	+1.4
2,393,610	+		IAI47_11330	0.16	+0.4
2,393,610	+		IAI47_11330	0.16	-0.8
2,393,611	-		IAI47_11330	0.17	-0.2
2,393,653	-		IAI47_11330	0.21	+0.2
2,393,685	+		IAI47_11330	0.25	+1.2
2,393,685	+		IAI47_11330	0.25	-1.1
2,393,701	-		IAI47_11330	0.27	-0.1
2,393,701	-		IAI47_11330	0.27	-0.1
2,393,713	+		IAI47_11330	0.28	+0.6
2,393,714	-		IAI47_11330	0.28	+0.6
2,393,714	-		IAI47_11330	0.28	+0.8
2,393,714	-		IAI47_11330	0.28	+2.7
2,393,752	-		IAI47_11330	0.33	+3.6
2,393,752	-		IAI47_11330	0.33	-0.3
2,393,752	-		IAI47_11330	0.33	-1.1
2,393,795	+		IAI47_11330	0.37	-0.5
2,393,795	+		IAI47_11330	0.37	+1.0
2,393,795	+		IAI47_11330	0.37	-0.8
2,393,795	+		IAI47_11330	0.37	-0.8
2,393,796	-		IAI47_11330	0.38	+3.2
2,393,796	-		IAI47_11330	0.38	-0.6
2,393,796	-		IAI47_11330	0.38	+2.2
2,393,796	-		IAI47_11330	0.38	-1.3
2,393,845	+		IAI47_11330	0.43	+1.0
2,393,846	-		IAI47_11330	0.43	-0.0
2,393,860	+		IAI47_11330	0.45	-0.6
2,393,874	+		IAI47_11330	0.46	-0.6
2,393,947	+		IAI47_11330	0.55	+0.5
2,393,948	-		IAI47_11330	0.55	-2.9
2,393,948	-		IAI47_11330	0.55	+1.1
2,393,948	-		IAI47_11330	0.55	+0.7
2,393,976	+		IAI47_11330	0.58	-1.0
2,393,976	+		IAI47_11330	0.58	-0.4
2,393,976	+		IAI47_11330	0.58	-0.7
2,393,977	-		IAI47_11330	0.58	-0.1
2,393,977	-		IAI47_11330	0.58	+0.6
2,393,977	-		IAI47_11330	0.58	+1.7
2,393,977	-		IAI47_11330	0.58	-1.1
2,393,977	-		IAI47_11330	0.58	+0.4
2,393,977	-		IAI47_11330	0.58	-1.0
2,393,977	-		IAI47_11330	0.58	-0.8
2,393,977	-		IAI47_11330	0.58	-2.4
2,393,977	-		IAI47_11330	0.58	+0.8
2,393,977	-		IAI47_11330	0.58	-0.6
2,394,007	+		IAI47_11330	0.61	+0.5
2,394,062	+		IAI47_11330	0.68	+0.8
2,394,062	+		IAI47_11330	0.68	+0.0
2,394,062	+		IAI47_11330	0.68	+1.0
2,394,063	-		IAI47_11330	0.68	-0.8
2,394,063	-		IAI47_11330	0.68	+0.6
2,394,063	-		IAI47_11330	0.68	+2.0
2,394,063	-		IAI47_11330	0.68	-0.8
2,394,083	+		IAI47_11330	0.70	-1.0
2,394,083	+		IAI47_11330	0.70	-0.8
2,394,083	+		IAI47_11330	0.70	+0.4
2,394,083	+		IAI47_11330	0.70	-1.3
2,394,084	-		IAI47_11330	0.70	-1.2
2,394,084	-		IAI47_11330	0.70	-2.7
2,394,087	+		IAI47_11330	0.70	+0.0
2,394,087	+		IAI47_11330	0.70	+1.4
2,394,087	+		IAI47_11330	0.70	-0.1
2,394,087	+		IAI47_11330	0.70	-0.4
2,394,088	-		IAI47_11330	0.71	-0.0
2,394,088	-		IAI47_11330	0.71	+1.0
2,394,180	+		IAI47_11330	0.81	+0.3
2,394,180	+		IAI47_11330	0.81	+0.1
2,394,180	+		IAI47_11330	0.81	+1.2
2,394,180	+		IAI47_11330	0.81	-0.7
2,394,181	-		IAI47_11330	0.81	+0.3
2,394,181	-		IAI47_11330	0.81	+1.3
2,394,267	+				-0.6
2,394,342	+				+0.2
2,394,380	+				+0.2
2,394,380	+				+1.8
2,394,384	+				+0.8
2,394,385	-				+0.6
2,394,391	+				-1.4
2,394,391	+				-0.1
2,394,413	+				-0.6
2,394,413	+				+1.3
2,394,422	+				-1.3
2,394,423	-				-0.6