Strain Fitness in Pantoea sp. MT58 around IAI47_11295

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,386,628	+				+0.2
2,386,628	+				-0.3
2,386,667	-				-1.4
2,386,687	+				+0.7
2,386,688	-				-0.3
2,386,718	+				-1.1
2,386,739	-				+0.4
2,386,801	+				-0.1
2,386,801	+				-2.4
2,386,802	-				-1.1
2,386,827	-				-1.0
2,386,829	+				+1.8
2,386,856	+				-1.1
2,386,856	+				+0.1
2,386,856	+				+1.5
2,386,860	+				+0.4
2,386,860	+				-0.4
2,386,860	+				-0.2
2,386,860	+				+3.3
2,386,861	-				-0.5
2,386,861	-				+1.9
2,386,861	-				-0.5
2,386,861	-				-0.3
2,386,862	+				-1.7
2,386,862	+				+1.4
2,386,862	+				-0.6
2,386,863	-				+0.5
2,386,867	+				+0.2
2,386,867	+				-0.4
2,386,867	+				+0.6
2,386,867	+				+1.2
2,386,867	+				-0.4
2,386,868	-				+1.6
2,386,868	-				+0.6
2,386,868	-				-1.8
2,386,884	+				+1.3
2,386,884	+				+1.0
2,386,884	+				-0.6
2,386,884	+				+0.5
2,386,884	+				+0.1
2,386,884	+				+0.2
2,386,885	-				+0.0
2,386,888	+				-1.0
2,386,888	+				-0.6
2,386,889	-				+1.2
2,386,889	-				+2.4
2,386,975	+		IAI47_11295	0.11	-0.5
2,386,976	-		IAI47_11295	0.11	-0.2
2,386,976	-		IAI47_11295	0.11	+2.9
2,386,976	-		IAI47_11295	0.11	-1.3
2,386,976	-		IAI47_11295	0.11	-0.9
2,386,979	+		IAI47_11295	0.12	+0.6
2,386,999	+		IAI47_11295	0.13	-0.8
2,386,999	+		IAI47_11295	0.13	+0.5
2,386,999	+		IAI47_11295	0.13	+1.1
2,386,999	+		IAI47_11295	0.13	+1.4
2,386,999	+		IAI47_11295	0.13	-0.6
2,387,000	-		IAI47_11295	0.13	-0.6
2,387,000	-		IAI47_11295	0.13	+1.2
2,387,003	+		IAI47_11295	0.14	+1.6
2,387,003	+		IAI47_11295	0.14	-0.8
2,387,003	+		IAI47_11295	0.14	+0.1
2,387,056	+		IAI47_11295	0.18	+2.3
2,387,057	-		IAI47_11295	0.18	-1.8
2,387,057	-		IAI47_11295	0.18	+1.2
2,387,057	-		IAI47_11295	0.18	-1.7
2,387,057	-		IAI47_11295	0.18	-1.5
2,387,057	-		IAI47_11295	0.18	+0.0
2,387,083	+		IAI47_11295	0.21	+1.7
2,387,084	-		IAI47_11295	0.21	+1.0
2,387,084	-		IAI47_11295	0.21	+1.2
2,387,084	-		IAI47_11295	0.21	+0.6
2,387,178	+		IAI47_11295	0.29	+1.2
2,387,178	+		IAI47_11295	0.29	-2.0
2,387,179	-		IAI47_11295	0.29	-0.2
2,387,179	-		IAI47_11295	0.29	+0.1
2,387,179	-		IAI47_11295	0.29	-1.4
2,387,179	-		IAI47_11295	0.29	+1.9
2,387,181	+		IAI47_11295	0.29	-1.7
2,387,181	+		IAI47_11295	0.29	-1.3
2,387,181	+		IAI47_11295	0.29	+0.1
2,387,182	-		IAI47_11295	0.29	-1.1
2,387,182	-		IAI47_11295	0.29	+0.2
2,387,200	+		IAI47_11295	0.31	-1.1
2,387,200	+		IAI47_11295	0.31	+1.9
2,387,200	+		IAI47_11295	0.31	-0.1
2,387,200	+		IAI47_11295	0.31	+2.5
2,387,201	-		IAI47_11295	0.31	+0.3
2,387,214	-		IAI47_11295	0.32	-0.1
2,387,222	+		IAI47_11295	0.33	+0.5
2,387,222	+		IAI47_11295	0.33	+1.4
2,387,223	-		IAI47_11295	0.33	+2.3
2,387,223	-		IAI47_11295	0.33	+1.9
2,387,223	-		IAI47_11295	0.33	+2.3
2,387,223	-		IAI47_11295	0.33	-0.6
2,387,223	-		IAI47_11295	0.33	+1.3
2,387,229	+		IAI47_11295	0.33	+0.1
2,387,229	+		IAI47_11295	0.33	-1.5
2,387,230	-		IAI47_11295	0.33	-0.1
2,387,230	-		IAI47_11295	0.33	-1.8
2,387,230	-		IAI47_11295	0.33	+0.9
2,387,231	+		IAI47_11295	0.34	+0.5
2,387,243	+		IAI47_11295	0.35	-0.5
2,387,243	+		IAI47_11295	0.35	-0.6
2,387,243	+		IAI47_11295	0.35	-1.4
2,387,244	-		IAI47_11295	0.35	-1.1
2,387,244	-		IAI47_11295	0.35	+0.6
2,387,366	+		IAI47_11295	0.45	+2.2
2,387,406	+		IAI47_11295	0.49	+0.3
2,387,407	-		IAI47_11295	0.49	+4.6
2,387,407	-		IAI47_11295	0.49	+0.1
2,387,450	+		IAI47_11295	0.53	+0.5
2,387,450	+		IAI47_11295	0.53	+1.4
2,387,450	+		IAI47_11295	0.53	-0.1
2,387,450	+		IAI47_11295	0.53	+0.4
2,387,451	-		IAI47_11295	0.53	-0.8
2,387,451	-		IAI47_11295	0.53	+0.8
2,387,546	-		IAI47_11295	0.61	-1.1
2,387,546	-		IAI47_11295	0.61	-0.7
2,387,546	-		IAI47_11295	0.61	+0.4
2,387,549	+		IAI47_11295	0.61	-2.2
2,387,598	+		IAI47_11295	0.65	+2.2
2,387,598	+		IAI47_11295	0.65	+3.8
2,387,598	+		IAI47_11295	0.65	-0.5
2,387,598	+		IAI47_11295	0.65	-0.2
2,387,598	+		IAI47_11295	0.65	-1.5
2,387,599	-		IAI47_11295	0.65	+0.6
2,387,599	-		IAI47_11295	0.65	+1.0
2,387,599	-		IAI47_11295	0.65	+1.4
2,387,599	-		IAI47_11295	0.65	-0.6
2,387,599	-		IAI47_11295	0.65	+1.5
2,387,599	-		IAI47_11295	0.65	-2.0
2,387,599	-		IAI47_11295	0.65	-1.7
2,387,599	-		IAI47_11295	0.65	+1.4
2,387,600	+		IAI47_11295	0.66	-1.6
2,387,600	+		IAI47_11295	0.66	-0.4
2,387,601	-		IAI47_11295	0.66	+3.0
2,387,601	-		IAI47_11295	0.66	+0.2
2,387,601	-		IAI47_11295	0.66	-0.4
2,387,639	+		IAI47_11295	0.69	+1.2
2,387,639	+		IAI47_11295	0.69	-0.2
2,387,639	+		IAI47_11295	0.69	+1.0
2,387,639	+		IAI47_11295	0.69	+0.4
2,387,640	-		IAI47_11295	0.69	+0.8
2,387,640	-		IAI47_11295	0.69	-0.3
2,387,640	-		IAI47_11295	0.69	+0.9
2,387,822	+		IAI47_11295	0.85	-0.5
2,387,822	+		IAI47_11295	0.85	+1.2
2,387,843	+		IAI47_11295	0.87	+0.4
2,387,843	+		IAI47_11295	0.87	-0.4
2,387,843	+		IAI47_11295	0.87	+3.6
2,387,847	+		IAI47_11295	0.87	+1.0
2,387,847	+		IAI47_11295	0.87	-1.9
2,387,848	-		IAI47_11295	0.87	+1.9
2,387,905	+				+0.1
2,387,931	+				+0.4
2,387,932	-				+0.6
2,387,994	+				+0.1
2,387,994	+				-1.1
2,387,994	+				-1.0
2,387,994	+				+0.2
2,387,995	-				+0.9
2,387,995	-				-0.9
2,387,995	-				-0.1
2,388,033	+		IAI47_11300	0.14	-2.4
2,388,034	-		IAI47_11300	0.15	-0.1
2,388,034	-		IAI47_11300	0.15	-1.0
2,388,034	-		IAI47_11300	0.15	-1.1
2,388,048	+		IAI47_11300	0.20	-1.3
2,388,049	-		IAI47_11300	0.20	-1.5
2,388,049	-		IAI47_11300	0.20	+1.5
2,388,051	+		IAI47_11300	0.21	-0.1
2,388,052	-		IAI47_11300	0.21	+2.2
2,388,052	-		IAI47_11300	0.21	-0.3
2,388,063	-		IAI47_11300	0.25	+1.2
2,388,101	+		IAI47_11300	0.39	+0.8
2,388,102	-		IAI47_11300	0.39	-1.1
2,388,126	-		IAI47_11300	0.48	+0.6
2,388,126	-		IAI47_11300	0.48	+1.3
2,388,126	-		IAI47_11300	0.48	-1.5
2,388,181	+		IAI47_11300	0.68	-0.1
2,388,182	-		IAI47_11300	0.68	+1.4
2,388,216	-		IAI47_11300	0.81	+1.4
2,388,261	+				-0.3
2,388,262	-				-0.8
2,388,285	+				+0.7
2,388,285	+				+2.2
2,388,286	-				+0.9
2,388,312	-				-0.6
2,388,312	-				-1.5
2,388,312	-				+0.8
2,388,327	-				+0.2
2,388,345	-				-1.1
2,388,374	+				+2.6
2,388,374	+				-1.0
2,388,374	+				+0.3
2,388,412	-				+1.8
2,388,485	-				-2.0
2,388,485	-				+1.2
2,388,490	-				-1.3
2,388,490	-				+1.2
2,388,490	-				+1.2
2,388,490	-				+0.9
2,388,516	+				+0.6