Strain Fitness in Pantoea sp. MT58 around IAI47_10635

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,245,758	-				+1.8
2,245,764	-				+0.8
2,245,764	-				-1.3
2,245,764	-				+1.2
2,245,766	+				-1.3
2,245,766	+				-0.4
2,245,766	+				-0.8
2,245,766	+				+1.7
2,245,766	+				+0.2
2,245,766	+				-0.3
2,245,766	+				-0.4
2,245,766	+				+0.2
2,245,767	-				+0.7
2,245,767	-				-1.0
2,245,767	-				-0.4
2,245,767	-				-1.0
2,245,767	-				-0.4
2,245,767	-				+1.4
2,245,767	-				-0.5
2,245,767	-				-1.3
2,245,813	-		IAI47_10630	0.15	+0.2
2,245,821	+		IAI47_10630	0.16	-0.2
2,245,821	+		IAI47_10630	0.16	+1.9
2,245,821	+		IAI47_10630	0.16	-0.2
2,245,822	-		IAI47_10630	0.17	+0.7
2,245,860	+		IAI47_10630	0.22	-0.0
2,245,860	+		IAI47_10630	0.22	+1.2
2,245,860	+		IAI47_10630	0.22	+1.2
2,245,861	-		IAI47_10630	0.22	+1.1
2,245,861	-		IAI47_10630	0.22	+1.8
2,245,861	-		IAI47_10630	0.22	+1.0
2,245,880	+		IAI47_10630	0.25	-0.2
2,245,880	+		IAI47_10630	0.25	+0.1
2,245,880	+		IAI47_10630	0.25	-1.1
2,245,880	+		IAI47_10630	0.25	+0.3
2,245,881	-		IAI47_10630	0.25	+0.2
2,245,922	+		IAI47_10630	0.31	+2.5
2,245,947	+		IAI47_10630	0.35	-1.4
2,245,947	+		IAI47_10630	0.35	-0.4
2,245,948	-		IAI47_10630	0.35	-0.9
2,245,948	-		IAI47_10630	0.35	-0.8
2,245,949	+		IAI47_10630	0.35	-2.9
2,245,949	+		IAI47_10630	0.35	+0.5
2,245,949	+		IAI47_10630	0.35	-0.7
2,245,949	+		IAI47_10630	0.35	+0.5
2,245,949	+		IAI47_10630	0.35	-0.2
2,245,949	+		IAI47_10630	0.35	-1.6
2,245,949	+		IAI47_10630	0.35	+0.6
2,245,949	+		IAI47_10630	0.35	+1.4
2,245,950	-		IAI47_10630	0.36	+1.6
2,245,950	-		IAI47_10630	0.36	+0.9
2,245,950	-		IAI47_10630	0.36	+0.2
2,245,950	-		IAI47_10630	0.36	-2.4
2,245,950	-		IAI47_10630	0.36	+1.2
2,246,040	+		IAI47_10630	0.49	-0.7
2,246,044	-		IAI47_10630	0.50	-1.1
2,246,044	-		IAI47_10630	0.50	-0.4
2,246,044	-		IAI47_10630	0.50	+2.6
2,246,044	-		IAI47_10630	0.50	+1.1
2,246,061	-		IAI47_10630	0.52	-0.2
2,246,072	+		IAI47_10630	0.54	+1.6
2,246,073	-		IAI47_10630	0.54	-1.2
2,246,075	+		IAI47_10630	0.54	+0.0
2,246,075	+		IAI47_10630	0.54	-0.4
2,246,075	+		IAI47_10630	0.54	+0.2
2,246,075	+		IAI47_10630	0.54	-1.7
2,246,075	+		IAI47_10630	0.54	-0.4
2,246,076	-		IAI47_10630	0.54	+0.4
2,246,076	-		IAI47_10630	0.54	+0.9
2,246,082	+		IAI47_10630	0.55	+1.4
2,246,258	-		IAI47_10630	0.81	-2.1
2,246,258	-		IAI47_10630	0.81	-2.2
2,246,264	-		IAI47_10630	0.82	-0.6
2,246,265	-		IAI47_10630	0.82	+0.2
2,246,280	+		IAI47_10630	0.85	+0.8
2,246,280	+		IAI47_10630	0.85	+0.8
2,246,280	+		IAI47_10630	0.85	-1.1
2,246,280	+		IAI47_10630	0.85	-2.2
2,246,280	+		IAI47_10630	0.85	+2.7
2,246,281	-		IAI47_10630	0.85	+1.6
2,246,281	-		IAI47_10630	0.85	+2.7
2,246,281	-		IAI47_10630	0.85	+0.4
2,246,281	-		IAI47_10630	0.85	+1.2
2,246,281	-		IAI47_10630	0.85	-1.2
2,246,281	-		IAI47_10630	0.85	-1.8
2,246,281	-		IAI47_10630	0.85	-0.9
2,246,281	-		IAI47_10630	0.85	-0.0
2,246,288	+		IAI47_10630	0.86	+3.2
2,246,289	+		IAI47_10630	0.86	-0.2
2,246,289	+		IAI47_10630	0.86	-0.3
2,246,289	+		IAI47_10630	0.86	+0.5
2,246,289	+		IAI47_10630	0.86	-0.8
2,246,289	+		IAI47_10630	0.86	+2.4
2,246,289	+		IAI47_10630	0.86	+1.1
2,246,289	+		IAI47_10630	0.86	-1.0
2,246,290	-		IAI47_10630	0.86	-1.3
2,246,290	-		IAI47_10630	0.86	+1.5
2,246,290	-		IAI47_10630	0.86	-1.4
2,246,290	-		IAI47_10630	0.86	-0.4
2,246,290	-		IAI47_10630	0.86	+0.2
2,246,290	-		IAI47_10630	0.86	-0.6
2,246,290	-		IAI47_10630	0.86	-0.3
2,246,343	+				-0.1
2,246,343	+				+0.2
2,246,344	-				+0.6
2,246,344	-				+0.8
2,246,344	-				-0.7
2,246,383	+				-1.4
2,246,383	+				+0.6
2,246,384	-				+0.6
2,246,458	+				-1.0
2,246,481	+				-0.9
2,246,482	-				-1.0
2,246,530	-				-1.0
2,246,530	-				+0.8
2,246,601	-				+0.6
2,246,618	-				-0.2
2,246,663	+				+1.2
2,246,663	+				-0.3
2,246,677	-				-0.8
2,246,677	-				+0.3
2,246,686	-				-0.3
2,246,702	+				-1.2
2,246,702	+				-0.4
2,246,704	+				+0.6
2,246,704	+				-0.5
2,246,704	+				-0.7
2,246,705	-				+0.0
2,246,724	-				-0.7
2,246,728	+				-0.7
2,246,728	+				+0.5
2,246,742	+				+1.6
2,246,742	+				-1.8
2,246,742	+				+1.3
2,246,742	+				+2.9
2,246,743	-				-0.2
2,246,743	-				+0.2
2,246,743	-				+0.2
2,246,743	-				-0.3
2,246,743	-				-0.7
2,246,965	-				-2.1
2,247,072	+		IAI47_10635	0.14	-1.2
2,247,072	+		IAI47_10635	0.14	+0.1
2,247,072	+		IAI47_10635	0.14	+0.3
2,247,072	+		IAI47_10635	0.14	+1.1
2,247,072	+		IAI47_10635	0.14	-0.9
2,247,072	+		IAI47_10635	0.14	+1.1
2,247,073	-		IAI47_10635	0.14	+1.9
2,247,073	-		IAI47_10635	0.14	-1.3
2,247,074	+		IAI47_10635	0.14	+1.6
2,247,074	+		IAI47_10635	0.14	-0.5
2,247,074	+		IAI47_10635	0.14	-2.3
2,247,124	-		IAI47_10635	0.17	-0.7
2,247,157	+		IAI47_10635	0.18	+0.3
2,247,284	+		IAI47_10635	0.24	+0.8
2,247,284	+		IAI47_10635	0.24	+0.1
2,247,284	+		IAI47_10635	0.24	+1.1
2,247,284	+		IAI47_10635	0.24	+2.5
2,247,285	-		IAI47_10635	0.24	-0.0
2,247,285	-		IAI47_10635	0.24	-1.3
2,247,285	-		IAI47_10635	0.24	+0.4
2,247,285	-		IAI47_10635	0.24	-0.4
2,247,292	-		IAI47_10635	0.24	+1.9
2,247,369	+		IAI47_10635	0.27	+1.7
2,247,369	+		IAI47_10635	0.27	-0.5
2,247,370	-		IAI47_10635	0.27	+1.3
2,247,385	-		IAI47_10635	0.28	+0.8
2,247,385	-		IAI47_10635	0.28	+0.1
2,247,472	+		IAI47_10635	0.32	+1.4
2,247,472	+		IAI47_10635	0.32	+1.5
2,247,472	+		IAI47_10635	0.32	+0.6
2,247,472	+		IAI47_10635	0.32	+1.7
2,247,473	-		IAI47_10635	0.32	+1.7
2,247,473	-		IAI47_10635	0.32	+0.4
2,247,532	-		IAI47_10635	0.35	-0.8
2,247,544	+		IAI47_10635	0.35	-0.3
2,247,545	-		IAI47_10635	0.35	-1.2
2,247,748	+		IAI47_10635	0.44	+0.7
2,247,749	-		IAI47_10635	0.44	+1.1
2,247,749	-		IAI47_10635	0.44	-0.1
2,247,768	-		IAI47_10635	0.45	+3.7
2,247,805	-		IAI47_10635	0.47	+0.1
2,247,933	+		IAI47_10635	0.52	-0.7
2,247,991	+		IAI47_10635	0.55	-0.0
2,247,991	+		IAI47_10635	0.55	+2.1
2,247,992	-		IAI47_10635	0.55	-0.6
2,247,992	-		IAI47_10635	0.55	-0.9
2,247,992	-		IAI47_10635	0.55	+0.0
2,248,066	+		IAI47_10635	0.58	+0.9
2,248,071	+		IAI47_10635	0.58	-0.2
2,248,071	+		IAI47_10635	0.58	+0.9
2,248,071	+		IAI47_10635	0.58	-1.3
2,248,071	+		IAI47_10635	0.58	-1.0
2,248,072	-		IAI47_10635	0.58	+0.6
2,248,126	+		IAI47_10635	0.61	-1.3
2,248,126	+		IAI47_10635	0.61	+1.6
2,248,127	-		IAI47_10635	0.61	+2.5
2,248,201	+		IAI47_10635	0.64	+0.1
2,248,202	-		IAI47_10635	0.64	-1.9
2,248,202	-		IAI47_10635	0.64	+0.2
2,248,202	-		IAI47_10635	0.64	+1.1
2,248,202	-		IAI47_10635	0.64	+1.4
2,248,258	+		IAI47_10635	0.67	-0.1
2,248,258	+		IAI47_10635	0.67	-1.4
2,248,258	+		IAI47_10635	0.67	-0.2
2,248,259	-		IAI47_10635	0.67	+0.1
2,248,259	-		IAI47_10635	0.67	+1.1
2,248,259	-		IAI47_10635	0.67	-0.9
2,248,259	-		IAI47_10635	0.67	-0.7
2,248,261	+		IAI47_10635	0.67	-1.0
2,248,261	+		IAI47_10635	0.67	+0.6
2,248,261	+		IAI47_10635	0.67	+1.0
2,248,262	-		IAI47_10635	0.67	-0.7
2,248,262	-		IAI47_10635	0.67	-0.8
2,248,262	-		IAI47_10635	0.67	+0.1
2,248,328	-		IAI47_10635	0.70	+1.1
2,248,344	+		IAI47_10635	0.70	-1.6
2,248,344	+		IAI47_10635	0.70	+1.1
2,248,360	+		IAI47_10635	0.71	+1.0
2,248,361	-		IAI47_10635	0.71	-2.0
2,248,401	+		IAI47_10635	0.73	-0.2
2,248,401	+		IAI47_10635	0.73	+0.1
2,248,405	-		IAI47_10635	0.73	+0.6
2,248,422	-		IAI47_10635	0.74	+0.7
2,248,464	+		IAI47_10635	0.76	-0.4
2,248,465	-		IAI47_10635	0.76	-0.2
2,248,519	+		IAI47_10635	0.78	+0.9
2,248,519	+		IAI47_10635	0.78	+0.1
2,248,519	+		IAI47_10635	0.78	-0.7
2,248,519	+		IAI47_10635	0.78	+1.1
2,248,520	-		IAI47_10635	0.78	-0.1
2,248,520	-		IAI47_10635	0.78	+0.1
2,248,520	-		IAI47_10635	0.78	+1.1
2,248,520	-		IAI47_10635	0.78	+0.9
2,248,524	+		IAI47_10635	0.78	+0.6
2,248,524	+		IAI47_10635	0.78	+0.1
2,248,525	-		IAI47_10635	0.78	-0.2
2,248,542	+		IAI47_10635	0.79	+2.0
2,248,542	+		IAI47_10635	0.79	+1.3
2,248,542	+		IAI47_10635	0.79	-2.2
2,248,543	-		IAI47_10635	0.79	-1.3
2,248,543	-		IAI47_10635	0.79	+1.1
2,248,543	-		IAI47_10635	0.79	+2.1
2,248,758	+		IAI47_10635	0.89	+0.9
2,248,759	-		IAI47_10635	0.89	+1.3
2,248,759	-		IAI47_10635	0.89	+1.5
2,248,759	-		IAI47_10635	0.89	-0.7
2,248,761	+		IAI47_10635	0.89	-1.0
2,248,761	+		IAI47_10635	0.89	-1.7
2,248,761	+		IAI47_10635	0.89	+0.7
2,248,762	-		IAI47_10635	0.89	-0.4
2,248,762	-		IAI47_10635	0.89	-0.0
2,248,762	-		IAI47_10635	0.89	+0.1
2,248,762	-		IAI47_10635	0.89	+0.0
2,248,795	+				-0.3
2,248,796	-				+1.3
2,248,813	+				+2.4
2,248,814	-				-1.3
2,248,947	+				+0.2
2,248,947	+				+0.3
2,249,019	+				+0.2
2,249,019	+				+1.8
2,249,057	-				-0.4
2,249,069	+				-0.3
2,249,070	-				+1.4
2,249,102	-				-1.0
2,249,102	-				+2.2
2,249,102	-				+0.1
2,249,224	+				-0.3
2,249,242	+				-0.6
2,249,243	-				-2.0
2,249,243	-				+1.1
2,249,250	+				-1.0
2,249,251	-				-0.4
2,249,251	-				-0.8
2,249,321	+		IAI47_10640	0.13	-0.4
2,249,321	+		IAI47_10640	0.13	-0.7
2,249,321	+		IAI47_10640	0.13	-2.4
2,249,322	-		IAI47_10640	0.13	-1.3
2,249,485	+		IAI47_10640	0.23	+0.2
2,249,561	+		IAI47_10640	0.27	+1.2
2,249,562	-		IAI47_10640	0.27	-0.1
2,249,562	-		IAI47_10640	0.27	-1.8
2,249,562	-		IAI47_10640	0.27	-0.4
2,249,641	+		IAI47_10640	0.32	+0.6
2,249,641	+		IAI47_10640	0.32	+1.8
2,249,642	-		IAI47_10640	0.32	-0.2
2,249,677	+		IAI47_10640	0.34	+2.2
2,249,677	+		IAI47_10640	0.34	+2.6
2,249,680	+		IAI47_10640	0.34	-0.1
2,249,942	-		IAI47_10640	0.50	-0.3
2,249,968	+		IAI47_10640	0.52	-2.2
2,249,969	-		IAI47_10640	0.52	-0.7
2,249,969	-		IAI47_10640	0.52	+0.9
2,249,969	-		IAI47_10640	0.52	-0.5