Strain Fitness in Pantoea sp. MT58 around IAI47_10085

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,135,899	+		IAI47_10080	0.42	-1.2
2,135,899	+		IAI47_10080	0.42	-0.7
2,135,899	+		IAI47_10080	0.42	-1.2
2,135,899	+		IAI47_10080	0.42	-0.2
2,135,900	-		IAI47_10080	0.42	+0.4
2,135,900	-		IAI47_10080	0.42	+1.0
2,135,921	+		IAI47_10080	0.43	+1.1
2,135,994	+		IAI47_10080	0.48	-1.6
2,135,994	+		IAI47_10080	0.48	+1.4
2,136,003	+		IAI47_10080	0.48	+0.8
2,136,003	+		IAI47_10080	0.48	+0.6
2,136,004	-		IAI47_10080	0.48	-0.2
2,136,082	+		IAI47_10080	0.53	-0.5
2,136,083	-		IAI47_10080	0.53	+0.5
2,136,083	-		IAI47_10080	0.53	-2.4
2,136,083	-		IAI47_10080	0.53	+0.4
2,136,083	-		IAI47_10080	0.53	-0.5
2,136,085	+		IAI47_10080	0.53	+0.8
2,136,086	-		IAI47_10080	0.53	+2.1
2,136,123	+		IAI47_10080	0.55	-1.2
2,136,161	-		IAI47_10080	0.58	+0.3
2,136,174	+		IAI47_10080	0.59	+1.3
2,136,174	+		IAI47_10080	0.59	+1.0
2,136,174	+		IAI47_10080	0.59	-1.7
2,136,174	+		IAI47_10080	0.59	-0.2
2,136,174	+		IAI47_10080	0.59	+0.5
2,136,175	-		IAI47_10080	0.59	-2.4
2,136,175	-		IAI47_10080	0.59	+0.0
2,136,175	-		IAI47_10080	0.59	-1.4
2,136,175	-		IAI47_10080	0.59	-1.6
2,136,175	-		IAI47_10080	0.59	-0.8
2,136,175	-		IAI47_10080	0.59	-0.2
2,136,440	-		IAI47_10080	0.75	+0.6
2,136,440	-		IAI47_10080	0.75	+1.1
2,136,466	-		IAI47_10080	0.76	-0.2
2,136,497	+		IAI47_10080	0.78	-0.2
2,136,497	+		IAI47_10080	0.78	-0.8
2,136,613	-		IAI47_10080	0.85	-0.7
2,136,670	+		IAI47_10080	0.89	+0.7
2,136,670	+		IAI47_10080	0.89	-0.5
2,136,670	+		IAI47_10080	0.89	-0.5
2,136,671	-		IAI47_10080	0.89	+2.1
2,136,671	-		IAI47_10080	0.89	+2.5
2,136,671	-		IAI47_10080	0.89	-0.2
2,136,691	+				-0.5
2,136,691	+				+0.6
2,136,692	-				-0.7
2,136,692	-				-1.1
2,136,692	-				+0.2
2,136,692	-				-1.5
2,136,692	-				+1.6
2,136,769	+				+0.4
2,136,769	+				-1.2
2,136,769	+				+0.2
2,136,770	-				-0.9
2,136,770	-				-0.2
2,136,911	+				-0.2
2,136,911	+				-1.8
2,136,911	+				+0.2
2,136,912	-				+1.7
2,136,912	-				-1.8
2,136,945	-				-0.9
2,136,945	-				-2.1
2,137,011	+		IAI47_10085	0.16	-0.8
2,137,011	+		IAI47_10085	0.16	+0.8
2,137,011	+		IAI47_10085	0.16	+1.5
2,137,011	+		IAI47_10085	0.16	-0.4
2,137,012	-		IAI47_10085	0.16	-1.2
2,137,012	-		IAI47_10085	0.16	-0.8
2,137,023	+		IAI47_10085	0.17	+1.9
2,137,023	+		IAI47_10085	0.17	+0.3
2,137,024	-		IAI47_10085	0.17	+2.1
2,137,024	-		IAI47_10085	0.17	+0.3
2,137,071	+		IAI47_10085	0.22	+2.7
2,137,071	+		IAI47_10085	0.22	+0.9
2,137,072	-		IAI47_10085	0.22	+0.3
2,137,072	-		IAI47_10085	0.22	-0.7
2,137,072	-		IAI47_10085	0.22	-1.7
2,137,072	-		IAI47_10085	0.22	-0.8
2,137,072	-		IAI47_10085	0.22	+0.5
2,137,072	-		IAI47_10085	0.22	+0.1
2,137,076	+		IAI47_10085	0.22	+0.5
2,137,132	+		IAI47_10085	0.28	-0.5
2,137,133	-		IAI47_10085	0.28	-1.2
2,137,133	-		IAI47_10085	0.28	-1.2
2,137,134	+		IAI47_10085	0.28	-1.1
2,137,135	-		IAI47_10085	0.28	+2.5
2,137,135	-		IAI47_10085	0.28	-0.7
2,137,165	+		IAI47_10085	0.31	-0.7
2,137,166	-		IAI47_10085	0.31	+0.3
2,137,241	+		IAI47_10085	0.38	-1.6
2,137,241	+		IAI47_10085	0.38	+1.1
2,137,242	-		IAI47_10085	0.38	+0.5
2,137,257	+		IAI47_10085	0.40	-1.2
2,137,257	+		IAI47_10085	0.40	+0.6
2,137,257	+		IAI47_10085	0.40	+1.4
2,137,258	-		IAI47_10085	0.40	+0.5
2,137,258	-		IAI47_10085	0.40	-0.5
2,137,258	-		IAI47_10085	0.40	+0.5
2,137,258	-		IAI47_10085	0.40	+1.7
2,137,258	-		IAI47_10085	0.40	-0.3
2,137,335	+		IAI47_10085	0.47	+1.2
2,137,335	+		IAI47_10085	0.47	+2.4
2,137,335	+		IAI47_10085	0.47	-2.2
2,137,335	+		IAI47_10085	0.47	+1.1
2,137,335	+		IAI47_10085	0.47	+1.4
2,137,336	-		IAI47_10085	0.47	-1.0
2,137,336	-		IAI47_10085	0.47	-0.4
2,137,336	-		IAI47_10085	0.47	+2.3
2,137,336	-		IAI47_10085	0.47	-0.4
2,137,453	+		IAI47_10085	0.59	+0.3
2,137,454	-		IAI47_10085	0.59	-1.0
2,137,480	+		IAI47_10085	0.61	+0.4
2,137,480	+		IAI47_10085	0.61	-1.8
2,137,481	-		IAI47_10085	0.62	+0.8
2,137,511	+		IAI47_10085	0.64	-0.8
2,137,511	+		IAI47_10085	0.64	-1.9
2,137,511	+		IAI47_10085	0.64	+0.1
2,137,511	+		IAI47_10085	0.64	+0.9
2,137,512	-		IAI47_10085	0.65	-1.0
2,137,518	+		IAI47_10085	0.65	+0.1
2,137,519	-		IAI47_10085	0.65	-2.1
2,137,544	+		IAI47_10085	0.68	-0.3
2,137,544	+		IAI47_10085	0.68	+0.1
2,137,544	+		IAI47_10085	0.68	+0.4
2,137,545	-		IAI47_10085	0.68	+3.2
2,137,651	+		IAI47_10085	0.78	+1.3
2,137,651	+		IAI47_10085	0.78	-1.0
2,137,652	-		IAI47_10085	0.78	-1.0
2,137,652	-		IAI47_10085	0.78	-1.6
2,137,652	-		IAI47_10085	0.78	-1.4
2,137,652	-		IAI47_10085	0.78	-1.4
2,137,674	+		IAI47_10085	0.80	-0.7
2,137,674	+		IAI47_10085	0.80	-1.4
2,137,675	-		IAI47_10085	0.80	+0.5
2,137,675	-		IAI47_10085	0.80	-0.9
2,137,675	-		IAI47_10085	0.80	-0.9
2,137,740	+		IAI47_10085	0.87	-0.2
2,137,740	+		IAI47_10085	0.87	-0.9
2,137,741	-		IAI47_10085	0.87	-0.2
2,137,741	-		IAI47_10085	0.87	-0.1
2,137,741	-		IAI47_10085	0.87	-1.4
2,137,741	-		IAI47_10085	0.87	-1.2
2,137,741	-		IAI47_10085	0.87	+0.6
2,137,741	-		IAI47_10085	0.87	-1.6
2,137,741	-		IAI47_10085	0.87	+0.6
2,137,741	-		IAI47_10085	0.87	-1.4
2,137,741	-		IAI47_10085	0.87	-1.6
2,137,741	-		IAI47_10085	0.87	-2.0
2,137,741	-		IAI47_10085	0.87	-0.9
2,137,769	+		IAI47_10085	0.89	+2.1
2,137,770	-		IAI47_10085	0.90	+0.1
2,137,817	-				-0.0
2,137,823	+				+1.1
2,137,873	+				+0.5
2,137,873	+				-0.7
2,137,873	+				+2.1
2,137,874	-				-1.6
2,137,874	-				-2.9
2,137,874	-				-1.1
2,137,874	-				+1.5
2,137,902	+				+3.1
2,137,903	-				-2.4
2,137,903	-				-0.4
2,137,982	-		IAI47_10090	0.12	-1.7
2,137,982	-		IAI47_10090	0.12	+0.9
2,138,186	+		IAI47_10090	0.34	+1.8
2,138,186	+		IAI47_10090	0.34	+1.5
2,138,186	+		IAI47_10090	0.34	+1.1
2,138,186	+		IAI47_10090	0.34	-0.9
2,138,187	-		IAI47_10090	0.35	-0.1
2,138,187	-		IAI47_10090	0.35	-1.2
2,138,187	-		IAI47_10090	0.35	-1.5
2,138,187	-		IAI47_10090	0.35	-0.0
2,138,193	+		IAI47_10090	0.35	+1.4
2,138,193	+		IAI47_10090	0.35	+1.2
2,138,193	+		IAI47_10090	0.35	-1.2
2,138,193	+		IAI47_10090	0.35	+0.1
2,138,193	+		IAI47_10090	0.35	+1.3
2,138,193	-		IAI47_10090	0.35	-0.7
2,138,194	-		IAI47_10090	0.35	+0.1
2,138,194	-		IAI47_10090	0.35	-0.7
2,138,194	-		IAI47_10090	0.35	+2.1
2,138,194	-		IAI47_10090	0.35	-2.4
2,138,194	-		IAI47_10090	0.35	+0.5
2,138,194	-		IAI47_10090	0.35	+3.4
2,138,194	-		IAI47_10090	0.35	-0.9
2,138,194	-		IAI47_10090	0.35	-2.5
2,138,296	+		IAI47_10090	0.47	+1.1
2,138,297	-		IAI47_10090	0.47	+1.6
2,138,297	-		IAI47_10090	0.47	+2.1
2,138,302	+		IAI47_10090	0.47	-0.7
2,138,302	+		IAI47_10090	0.47	+0.5
2,138,302	+		IAI47_10090	0.47	+1.5
2,138,302	+		IAI47_10090	0.47	+0.1
2,138,303	-		IAI47_10090	0.47	-0.9
2,138,303	-		IAI47_10090	0.47	+2.1
2,138,303	-		IAI47_10090	0.47	-1.1
2,138,303	-		IAI47_10090	0.47	-1.2
2,138,383	+		IAI47_10090	0.56	-0.8
2,138,383	+		IAI47_10090	0.56	-1.1
2,138,384	-		IAI47_10090	0.56	-1.1
2,138,455	+		IAI47_10090	0.64	+1.0
2,138,473	-		IAI47_10090	0.66	-1.4
2,138,473	-		IAI47_10090	0.66	+0.8
2,138,509	+		IAI47_10090	0.70	-1.1
2,138,509	+		IAI47_10090	0.70	-0.1
2,138,509	+		IAI47_10090	0.70	+1.2
2,138,510	-		IAI47_10090	0.70	+0.1
2,138,510	-		IAI47_10090	0.70	-1.4
2,138,510	-		IAI47_10090	0.70	-0.1
2,138,512	+		IAI47_10090	0.70	-0.5
2,138,512	+		IAI47_10090	0.70	+1.8
2,138,513	-		IAI47_10090	0.71	-1.0
2,138,513	-		IAI47_10090	0.71	-2.0
2,138,513	-		IAI47_10090	0.71	+0.6
2,138,539	+		IAI47_10090	0.73	+0.0
2,138,557	+		IAI47_10090	0.75	-1.0
2,138,557	+		IAI47_10090	0.75	-0.2
2,138,569	+		IAI47_10090	0.77	+1.5
2,138,570	-		IAI47_10090	0.77	+1.4
2,138,660	+		IAI47_10090	0.87	+0.6
2,138,660	+		IAI47_10090	0.87	+0.9
2,138,660	+		IAI47_10090	0.87	+0.2
2,138,661	-		IAI47_10090	0.87	-2.5
2,138,661	-		IAI47_10090	0.87	+0.5
2,138,661	-		IAI47_10090	0.87	-0.2
2,138,661	-		IAI47_10090	0.87	-0.9
2,138,661	-		IAI47_10090	0.87	-0.2
2,138,661	-		IAI47_10090	0.87	+2.2
2,138,661	-		IAI47_10090	0.87	-1.5
2,138,661	-		IAI47_10090	0.87	+0.1
2,138,713	+				+1.1
2,138,713	+				+1.3
2,138,714	-				+1.9
2,138,714	-				-1.8
2,138,729	-				-1.1
2,138,737	-				+0.1
2,138,748	+				-1.4
2,138,748	+				-1.2
2,138,748	+				+1.0
2,138,748	+				+3.5
2,138,748	+				+1.4
2,138,749	-				+0.9
2,138,749	-				-1.5
2,138,749	-				-0.5
2,138,823	-				+1.9
2,138,826	-				+2.1