Strain Fitness in Pantoea sp. MT58 around IAI47_10070

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,131,496	+		IAI47_10060	0.68	-1.5
2,131,496	+		IAI47_10060	0.68	-0.8
2,131,497	-		IAI47_10060	0.68	-1.5
2,131,503	-		IAI47_10060	0.69	-0.6
2,131,520	+		IAI47_10060	0.70	+1.3
2,131,520	+		IAI47_10060	0.70	+0.8
2,131,520	+		IAI47_10060	0.70	+1.7
2,131,520	+		IAI47_10060	0.70	+1.2
2,131,520	+		IAI47_10060	0.70	-0.2
2,131,521	-		IAI47_10060	0.70	+1.9
2,131,521	-		IAI47_10060	0.70	+0.5
2,131,586	+		IAI47_10060	0.75	+0.5
2,131,587	-		IAI47_10060	0.75	+1.1
2,131,640	+		IAI47_10060	0.79	-0.1
2,131,640	+		IAI47_10060	0.79	+1.1
2,131,641	-		IAI47_10060	0.79	+1.9
2,131,641	-		IAI47_10060	0.79	-0.6
2,131,641	-		IAI47_10060	0.79	-0.1
2,131,654	+		IAI47_10060	0.80	+0.6
2,131,654	+		IAI47_10060	0.80	-1.1
2,131,654	+		IAI47_10060	0.80	+0.6
2,131,654	+		IAI47_10060	0.80	-0.3
2,131,654	+		IAI47_10060	0.80	-2.0
2,131,654	+		IAI47_10060	0.80	-1.4
2,131,655	-		IAI47_10060	0.81	-0.8
2,131,655	-		IAI47_10060	0.81	-0.2
2,131,655	-		IAI47_10060	0.81	-1.2
2,131,655	-		IAI47_10060	0.81	-0.0
2,131,655	-		IAI47_10060	0.81	-1.4
2,131,772	+		IAI47_10060	0.90	+0.1
2,131,772	+		IAI47_10060	0.90	-0.8
2,131,893	-				+0.5
2,131,899	+				-0.4
2,131,900	-				+0.8
2,131,900	-				-0.2
2,131,900	-				-0.9
2,131,922	-				+0.1
2,131,922	-				-1.5
2,131,938	+				-0.7
2,131,939	-				+1.1
2,131,975	-		IAI47_10065	0.13	-0.2
2,131,975	-		IAI47_10065	0.13	+0.9
2,132,045	+		IAI47_10065	0.31	-0.9
2,132,123	-		IAI47_10065	0.50	+1.5
2,132,123	-		IAI47_10065	0.50	+0.7
2,132,157	+		IAI47_10065	0.58	+0.5
2,132,157	+		IAI47_10065	0.58	+0.1
2,132,158	-		IAI47_10065	0.58	+0.5
2,132,205	+		IAI47_10065	0.70	+0.1
2,132,205	+		IAI47_10065	0.70	-1.9
2,132,206	-		IAI47_10065	0.70	-2.2
2,132,221	+		IAI47_10065	0.74	-0.7
2,132,221	+		IAI47_10065	0.74	+0.6
2,132,221	+		IAI47_10065	0.74	+0.1
2,132,221	+		IAI47_10065	0.74	+0.1
2,132,221	+		IAI47_10065	0.74	-0.9
2,132,221	+		IAI47_10065	0.74	-1.9
2,132,222	-		IAI47_10065	0.74	+4.4
2,132,222	-		IAI47_10065	0.74	+0.8
2,132,222	-		IAI47_10065	0.74	+1.2
2,132,222	-		IAI47_10065	0.74	-0.5
2,132,222	-		IAI47_10065	0.74	-0.5
2,132,284	+		IAI47_10065	0.89	+0.1
2,132,284	+		IAI47_10065	0.89	+1.8
2,132,285	-		IAI47_10065	0.89	+0.2
2,132,318	+				-0.5
2,132,318	+				-0.7
2,132,318	+				-1.4
2,132,318	+				-2.1
2,132,318	+				+0.3
2,132,319	-				+0.5
2,132,319	-				+2.1
2,132,319	-				-1.7
2,132,319	-				-1.6
2,132,321	+				+0.8
2,132,321	+				+1.4
2,132,321	+				-0.7
2,132,322	-				+0.2
2,132,322	-				-1.4
2,132,322	-				-3.2
2,132,322	-				-0.7
2,132,322	-				+1.6
2,132,440	-				+0.5
2,132,501	+				+1.5
2,132,658	-		IAI47_10070	0.15	-2.7
2,132,663	-		IAI47_10070	0.15	-1.6
2,132,663	-		IAI47_10070	0.15	+1.4
2,132,663	-		IAI47_10070	0.15	+1.7
2,132,663	-		IAI47_10070	0.15	+0.2
2,132,807	+		IAI47_10070	0.28	+0.1
2,132,807	+		IAI47_10070	0.28	+0.8
2,132,807	+		IAI47_10070	0.28	-0.7
2,132,808	-		IAI47_10070	0.28	+0.7
2,132,808	-		IAI47_10070	0.28	-0.7
2,132,812	+		IAI47_10070	0.29	-0.5
2,132,812	+		IAI47_10070	0.29	-1.1
2,132,812	+		IAI47_10070	0.29	+0.7
2,132,812	+		IAI47_10070	0.29	+2.1
2,132,813	-		IAI47_10070	0.29	-2.0
2,132,894	+		IAI47_10070	0.36	+0.8
2,132,895	-		IAI47_10070	0.36	-0.5
2,132,919	-		IAI47_10070	0.38	-1.0
2,132,934	+		IAI47_10070	0.40	+1.7
2,132,934	+		IAI47_10070	0.40	-0.5
2,132,934	+		IAI47_10070	0.40	+1.1
2,132,934	+		IAI47_10070	0.40	-1.6
2,132,934	+		IAI47_10070	0.40	+0.8
2,132,934	+		IAI47_10070	0.40	-0.8
2,132,935	-		IAI47_10070	0.40	-0.1
2,132,935	-		IAI47_10070	0.40	+0.2
2,132,935	-		IAI47_10070	0.40	-1.4
2,132,935	-		IAI47_10070	0.40	-1.4
2,132,940	+		IAI47_10070	0.40	-2.1
2,132,941	-		IAI47_10070	0.40	+2.1
2,132,941	-		IAI47_10070	0.40	-1.1
2,132,964	-		IAI47_10070	0.42	+0.5
2,133,087	-		IAI47_10070	0.53	+1.0
2,133,089	+		IAI47_10070	0.53	-0.4
2,133,089	+		IAI47_10070	0.53	+1.2
2,133,090	-		IAI47_10070	0.53	-1.2
2,133,113	+		IAI47_10070	0.56	-2.0
2,133,114	-		IAI47_10070	0.56	+0.0
2,133,114	-		IAI47_10070	0.56	+0.2
2,133,114	-		IAI47_10070	0.56	-1.6
2,133,114	-		IAI47_10070	0.56	-0.7
2,133,370	+		IAI47_10070	0.79	-0.5
2,133,379	+		IAI47_10070	0.79	+0.7
2,133,398	+		IAI47_10070	0.81	-0.2
2,133,399	-		IAI47_10070	0.81	-0.5
2,133,399	-		IAI47_10070	0.81	-0.2
2,133,399	-		IAI47_10070	0.81	+0.5
2,133,399	-		IAI47_10070	0.81	-1.4
2,133,432	-		IAI47_10070	0.84	-1.2
2,133,466	+		IAI47_10070	0.87	+2.1
2,133,467	-		IAI47_10070	0.87	+0.8
2,133,467	-		IAI47_10070	0.87	-1.8
2,133,611	+				+0.1
2,133,611	+				+0.9
2,133,611	+				-1.0
2,133,611	+				-0.2
2,133,659	+				-0.5
2,133,659	+				-0.7
2,133,660	-				-0.3
2,133,662	+				+1.1
2,133,662	+				+0.9
2,133,662	+				+0.6
2,133,662	+				-2.4
2,133,662	+				-0.5
2,133,663	-				+1.1
2,133,663	-				-0.2
2,133,663	-				-1.2
2,133,663	-				-0.1
2,133,663	-				-0.5
2,133,663	-				+1.1
2,133,663	-				-0.5
2,133,663	-				-0.2
2,133,663	-				+1.5
2,133,665	+				-0.2
2,133,665	+				+1.3
2,133,666	-				-1.2
2,133,669	+				-0.7
2,133,670	-				+0.1
2,133,700	-				-0.1
2,133,722	+				+0.8
2,133,723	-				+0.1
2,133,741	+				-0.9
2,133,741	+				-1.0
2,133,812	+				-1.1
2,133,812	+				+1.3
2,133,812	+				+0.1
2,133,813	-				-1.4
2,133,813	-				+2.2
2,133,813	-				-0.5
2,133,813	-				-1.5
2,133,842	+				+0.5
2,133,843	-				+0.2
2,133,843	-				+1.4
2,133,860	+				+0.1
2,133,861	-				+0.6
2,133,955	+				-0.7
2,133,955	+				+0.7
2,133,956	-				-0.7
2,133,992	+				+0.6
2,133,992	+				+0.1
2,133,992	+				-1.2
2,133,993	-				-0.9
2,133,993	-				-0.2
2,133,997	-				+0.1
2,133,997	-				+0.1
2,134,069	+				-0.9
2,134,145	+		IAI47_10075	0.16	+0.8
2,134,359	+		IAI47_10075	0.35	-0.5
2,134,360	-		IAI47_10075	0.35	-0.4
2,134,399	+		IAI47_10075	0.38	+0.8
2,134,400	-		IAI47_10075	0.38	-0.5
2,134,416	+		IAI47_10075	0.39	+1.0
2,134,416	+		IAI47_10075	0.39	+1.0
2,134,417	-		IAI47_10075	0.40	+1.5
2,134,417	-		IAI47_10075	0.40	-0.9
2,134,417	-		IAI47_10075	0.40	+1.0
2,134,417	-		IAI47_10075	0.40	+0.6
2,134,453	-		IAI47_10075	0.43	-1.8
2,134,590	+		IAI47_10075	0.55	-0.2
2,134,591	-		IAI47_10075	0.55	+2.1
2,134,591	-		IAI47_10075	0.55	-1.6
2,134,591	-		IAI47_10075	0.55	+0.3
2,134,591	-		IAI47_10075	0.55	-0.7