Strain Fitness in Pantoea sp. MT58 around IAI47_07615

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,610,856	+				-2.4
1,610,856	+				-0.6
1,610,856	+				+0.4
1,610,856	+				+0.6
1,610,857	-				-1.1
1,610,857	-				-0.1
1,610,857	-				+0.5
1,610,900	+				+0.5
1,610,900	+				+0.4
1,610,926	+				+0.6
1,610,926	+				-0.9
1,610,927	-				+0.6
1,610,927	-				+0.7
1,611,019	-		IAI47_07610	0.12	-0.7
1,611,113	+		IAI47_07610	0.23	-0.6
1,611,113	+		IAI47_07610	0.23	+1.5
1,611,114	-		IAI47_07610	0.23	-2.3
1,611,140	-		IAI47_07610	0.26	+1.0
1,611,258	+		IAI47_07610	0.40	+1.2
1,611,375	-		IAI47_07610	0.53	-2.0
1,611,375	-		IAI47_07610	0.53	-1.8
1,611,424	+		IAI47_07610	0.59	+0.2
1,611,424	+		IAI47_07610	0.59	-2.2
1,611,424	+		IAI47_07610	0.59	+0.6
1,611,425	-		IAI47_07610	0.59	+1.0
1,611,425	-		IAI47_07610	0.59	-0.6
1,611,434	+		IAI47_07610	0.60	+0.8
1,611,434	+		IAI47_07610	0.60	+3.8
1,611,434	+		IAI47_07610	0.60	-1.9
1,611,435	-		IAI47_07610	0.60	+1.7
1,611,435	-		IAI47_07610	0.60	+0.7
1,611,435	-		IAI47_07610	0.60	+2.2
1,611,435	-		IAI47_07610	0.60	-1.5
1,611,473	+		IAI47_07610	0.65	+0.2
1,611,473	+		IAI47_07610	0.65	+0.1
1,611,473	+		IAI47_07610	0.65	-1.9
1,611,473	+		IAI47_07610	0.65	-0.6
1,611,473	+		IAI47_07610	0.65	+0.8
1,611,473	+		IAI47_07610	0.65	-0.4
1,611,474	-		IAI47_07610	0.65	+1.6
1,611,474	-		IAI47_07610	0.65	+1.1
1,611,474	-		IAI47_07610	0.65	-2.2
1,611,474	-		IAI47_07610	0.65	-0.6
1,611,475	+		IAI47_07610	0.65	-0.6
1,611,475	+		IAI47_07610	0.65	-1.2
1,611,475	+		IAI47_07610	0.65	+0.6
1,611,476	-		IAI47_07610	0.65	+0.1
1,611,500	-		IAI47_07610	0.68	+0.2
1,611,500	-		IAI47_07610	0.68	+1.2
1,611,545	+		IAI47_07610	0.73	-0.1
1,611,545	+		IAI47_07610	0.73	+0.6
1,611,545	+		IAI47_07610	0.73	-2.1
1,611,546	-		IAI47_07610	0.73	+2.6
1,611,546	-		IAI47_07610	0.73	-0.3
1,611,546	-		IAI47_07610	0.73	-0.6
1,611,546	-		IAI47_07610	0.73	-2.6
1,611,547	+		IAI47_07610	0.73	-0.2
1,611,602	+		IAI47_07610	0.80	-1.8
1,611,603	-		IAI47_07610	0.80	-0.2
1,611,603	-		IAI47_07610	0.80	+1.8
1,611,634	+		IAI47_07610	0.84	-0.4
1,611,634	+		IAI47_07610	0.84	+1.5
1,611,635	-		IAI47_07610	0.84	-0.4
1,611,645	+		IAI47_07610	0.85	+1.7
1,611,645	+		IAI47_07610	0.85	+1.9
1,611,786	+				+0.6
1,611,786	+				-0.2
1,611,787	-				+1.4
1,611,787	-				+0.1
1,611,787	-				-1.4
1,611,787	-				+0.8
1,611,787	-				-0.9
1,611,804	-				-2.1
1,611,804	-				+1.7
1,611,880	-				-2.1
1,611,911	+				+0.6
1,611,930	+				-1.9
1,611,930	+				-1.4
1,611,931	-				-2.0
1,611,961	+		IAI47_07615	0.12	+2.3
1,611,961	+		IAI47_07615	0.12	-0.9
1,611,962	-		IAI47_07615	0.12	-0.6
1,611,962	-		IAI47_07615	0.12	-0.9
1,611,962	-		IAI47_07615	0.12	+0.4
1,612,020	+		IAI47_07615	0.15	-0.4
1,612,021	-		IAI47_07615	0.15	-0.5
1,612,021	-		IAI47_07615	0.15	+0.9
1,612,043	+		IAI47_07615	0.16	-0.1
1,612,043	+		IAI47_07615	0.16	+0.2
1,612,043	+		IAI47_07615	0.16	+0.2
1,612,044	-		IAI47_07615	0.17	-0.4
1,612,072	+		IAI47_07615	0.18	+1.4
1,612,072	+		IAI47_07615	0.18	-0.9
1,612,072	+		IAI47_07615	0.18	+0.5
1,612,073	-		IAI47_07615	0.18	-0.9
1,612,075	-				+2.2
1,612,102	-		IAI47_07615	0.20	-1.2
1,612,142	+		IAI47_07615	0.22	+1.0
1,612,142	+		IAI47_07615	0.22	+3.6
1,612,146	+		IAI47_07615	0.23	-2.2
1,612,146	+		IAI47_07615	0.23	-0.0
1,612,147	-		IAI47_07615	0.23	+1.4
1,612,147	-		IAI47_07615	0.23	-0.8
1,612,190	+		IAI47_07615	0.25	-0.8
1,612,190	+		IAI47_07615	0.25	+3.8
1,612,190	+		IAI47_07615	0.25	-1.6
1,612,191	-		IAI47_07615	0.25	-0.1
1,612,191	-		IAI47_07615	0.25	+1.3
1,612,232	+		IAI47_07615	0.28	+2.6
1,612,256	+		IAI47_07615	0.29	-0.1
1,612,271	+		IAI47_07615	0.30	-1.1
1,612,271	+		IAI47_07615	0.30	-0.7
1,612,272	-		IAI47_07615	0.30	-0.1
1,612,272	-		IAI47_07615	0.30	-1.2
1,612,272	-		IAI47_07615	0.30	-0.6
1,612,272	-		IAI47_07615	0.30	+0.0
1,612,272	-		IAI47_07615	0.30	-0.4
1,612,272	-		IAI47_07615	0.30	+1.4
1,612,272	-		IAI47_07615	0.30	-0.2
1,612,272	-		IAI47_07615	0.30	+0.2
1,612,272	-		IAI47_07615	0.30	-1.2
1,612,272	-		IAI47_07615	0.30	+1.6
1,612,420	+		IAI47_07615	0.39	-1.7
1,612,420	+		IAI47_07615	0.39	-1.9
1,612,420	+		IAI47_07615	0.39	+2.2
1,612,420	+		IAI47_07615	0.39	+0.2
1,612,421	-		IAI47_07615	0.39	+0.3
1,612,421	-		IAI47_07615	0.39	+0.9
1,612,498	+		IAI47_07615	0.44	-2.3
1,612,498	+		IAI47_07615	0.44	+1.1
1,612,499	-		IAI47_07615	0.44	+1.2
1,612,499	-		IAI47_07615	0.44	-0.5
1,612,540	+		IAI47_07615	0.46	-0.9
1,612,541	-		IAI47_07615	0.46	+1.2
1,612,550	+		IAI47_07615	0.47	-1.2
1,612,550	+		IAI47_07615	0.47	+0.2
1,612,551	-		IAI47_07615	0.47	-1.2
1,612,740	+		IAI47_07615	0.58	+0.9
1,612,794	+		IAI47_07615	0.62	+1.5
1,612,794	+		IAI47_07615	0.62	+2.0
1,612,794	+		IAI47_07615	0.62	+2.5
1,612,794	+		IAI47_07615	0.62	-0.1
1,612,794	+		IAI47_07615	0.62	+0.5
1,612,795	-		IAI47_07615	0.62	+0.9
1,612,795	-		IAI47_07615	0.62	+1.1
1,612,824	+		IAI47_07615	0.63	+0.8
1,612,834	+		IAI47_07615	0.64	+1.7
1,612,834	+		IAI47_07615	0.64	+1.6
1,612,834	+		IAI47_07615	0.64	+0.2
1,612,834	+		IAI47_07615	0.64	-0.0
1,612,834	+		IAI47_07615	0.64	+2.2
1,612,834	+		IAI47_07615	0.64	-1.9
1,612,834	+		IAI47_07615	0.64	-0.4
1,612,835	-		IAI47_07615	0.64	-1.9
1,612,835	-		IAI47_07615	0.64	+2.2
1,612,835	-		IAI47_07615	0.64	-0.4
1,612,888	+		IAI47_07615	0.67	-0.3
1,612,888	+		IAI47_07615	0.67	+0.5
1,612,888	+		IAI47_07615	0.67	-0.6
1,612,888	+		IAI47_07615	0.67	-1.3
1,612,888	+		IAI47_07615	0.67	-1.4
1,612,888	+		IAI47_07615	0.67	+1.5
1,612,888	+		IAI47_07615	0.67	+0.2
1,612,888	+		IAI47_07615	0.67	-0.6
1,612,889	-		IAI47_07615	0.67	-0.6
1,612,889	-		IAI47_07615	0.67	+0.6
1,612,889	-		IAI47_07615	0.67	-0.3
1,612,889	-		IAI47_07615	0.67	+0.1
1,612,941	+		IAI47_07615	0.70	-0.8
1,612,941	+		IAI47_07615	0.70	-0.1
1,612,941	+		IAI47_07615	0.70	+0.9
1,613,012	+		IAI47_07615	0.75	-0.2
1,613,012	+		IAI47_07615	0.75	+5.4
1,613,012	+		IAI47_07615	0.75	+0.1
1,613,013	-		IAI47_07615	0.75	+0.4
1,613,024	+		IAI47_07615	0.75	-2.2
1,613,025	-		IAI47_07615	0.75	+2.0
1,613,181	-		IAI47_07615	0.85	-1.0
1,613,189	+		IAI47_07615	0.85	+1.1
1,613,232	+		IAI47_07615	0.88	+0.2
1,613,232	+		IAI47_07615	0.88	-1.4
1,613,232	+		IAI47_07615	0.88	+0.6
1,613,233	-		IAI47_07615	0.88	+2.5
1,613,283	-				+1.2
1,613,327	-				+1.2
1,613,351	-				-2.3
1,613,351	-				+0.2
1,613,420	+				+1.1
1,613,436	+				+0.6
1,613,437	-				+0.2
1,613,437	-				+1.0
1,613,437	-				-0.1
1,613,490	+				+2.0
1,613,491	-				+1.0
1,613,491	-				+2.0
1,613,491	-				-1.9
1,613,491	-				-0.7
1,613,491	-				+0.0
1,613,494	+				-1.1
1,613,494	+				+0.9
1,613,495	-				+1.5
1,613,510	-				-1.9
1,613,510	-				+0.2
1,613,547	+				+2.2
1,613,547	+				+0.0
1,613,548	-				-0.9
1,613,548	-				-0.9
1,613,555	+				-1.4
1,613,555	+				+0.2
1,613,555	+				+2.0
1,613,555	+				-0.9
1,613,556	-				-0.4
1,613,556	-				+0.6
1,613,556	-				+0.8
1,613,556	-				+1.3
1,613,556	-				+2.6
1,613,574	+				-0.7
1,613,574	+				+1.2
1,613,574	+				+0.1
1,613,575	-				+0.4
1,613,575	-				+1.2
1,613,575	-				-1.3
1,613,575	-				-0.6
1,613,578	+				+1.5
1,613,578	+				-0.6
1,613,578	+				+0.0
1,613,578	+				-0.6
1,613,579	-				+0.7
1,613,579	-				+0.0
1,613,579	-				-0.4
1,613,579	-				+2.2
1,613,579	-				-0.0
1,613,579	-				+0.9
1,613,783	+		IAI47_07620	0.17	+0.5
1,613,784	-		IAI47_07620	0.17	-0.2
1,613,787	+		IAI47_07620	0.17	-0.1
1,613,787	+		IAI47_07620	0.17	+2.6
1,613,788	-		IAI47_07620	0.17	+0.1
1,613,812	+		IAI47_07620	0.19	+3.8
1,613,812	+		IAI47_07620	0.19	-0.6
1,613,812	+		IAI47_07620	0.19	+0.4
1,613,812	+		IAI47_07620	0.19	-0.4
1,613,813	-		IAI47_07620	0.19	-0.9
1,613,813	-		IAI47_07620	0.19	-1.0
1,613,863	-		IAI47_07620	0.23	+0.3
1,613,900	+		IAI47_07620	0.26	-0.9
1,613,900	+		IAI47_07620	0.26	-1.7
1,613,900	+		IAI47_07620	0.26	-0.6
1,613,918	+		IAI47_07620	0.27	-0.1
1,613,925	+		IAI47_07620	0.28	-1.1
1,613,926	-		IAI47_07620	0.28	+0.1
1,613,926	-		IAI47_07620	0.28	+0.2
1,613,932	+		IAI47_07620	0.28	+1.3
1,613,932	+		IAI47_07620	0.28	+0.2
1,613,933	-		IAI47_07620	0.28	-0.2
1,613,933	-		IAI47_07620	0.28	+1.2
1,614,185	+		IAI47_07620	0.47	+3.4
1,614,185	+		IAI47_07620	0.47	+0.9
1,614,186	-		IAI47_07620	0.47	+0.9
1,614,258	-		IAI47_07620	0.53	+0.7
1,614,275	+		IAI47_07620	0.54	-3.0
1,614,285	-		IAI47_07620	0.55	+0.1
1,614,312	+		IAI47_07620	0.57	-1.4
1,614,313	-		IAI47_07620	0.57	+1.1
1,614,354	+		IAI47_07620	0.60	-1.2
1,614,354	+		IAI47_07620	0.60	+1.2
1,614,354	+		IAI47_07620	0.60	-1.7
1,614,354	+		IAI47_07620	0.60	+3.6
1,614,355	-		IAI47_07620	0.60	-0.8
1,614,411	+		IAI47_07620	0.64	-0.4
1,614,412	-		IAI47_07620	0.64	+0.6
1,614,412	-		IAI47_07620	0.64	-0.2
1,614,427	-		IAI47_07620	0.65	+0.7
1,614,427	-		IAI47_07620	0.65	-0.1
1,614,427	-		IAI47_07620	0.65	-0.6