Strain Fitness in Pantoea sp. MT58 around IAI47_07365

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,554,812	+		IAI47_07355	0.37	+0.7
1,554,852	-		IAI47_07355	0.42	+1.0
1,554,873	+		IAI47_07355	0.44	+0.2
1,554,886	-		IAI47_07355	0.46	-0.3
1,554,886	-		IAI47_07355	0.46	-0.1
1,554,999	+		IAI47_07355	0.60	-0.7
1,555,001	+		IAI47_07355	0.61	+0.7
1,555,002	-		IAI47_07355	0.61	+1.2
1,555,005	+		IAI47_07355	0.61	-1.2
1,555,152	+		IAI47_07355	0.80	+0.1
1,555,172	-		IAI47_07355	0.83	-1.2
1,555,222	-		IAI47_07355	0.89	+0.2
1,555,222	-		IAI47_07355	0.89	-0.8
1,555,224	+		IAI47_07355	0.89	-1.1
1,555,228	+		IAI47_07355	0.90	+1.2
1,555,406	+		IAI47_07360	0.22	+0.4
1,555,407	-		IAI47_07360	0.22	+1.2
1,555,447	-		IAI47_07360	0.31	-0.9
1,555,653	+		IAI47_07360	0.73	+0.7
1,555,654	-		IAI47_07360	0.73	-2.5
1,555,676	+		IAI47_07360	0.78	-0.3
1,555,765	+				+0.4
1,555,766	-				-1.5
1,555,766	-				-0.4
1,555,766	-				-1.8
1,555,766	-				+2.2
1,555,766	-				-0.3
1,555,767	+				+0.5
1,555,767	+				+0.8
1,555,767	+				-1.3
1,555,767	+				-0.4
1,555,767	+				-1.3
1,555,767	+				+0.7
1,555,768	-				+0.3
1,555,768	-				-1.0
1,555,768	-				-0.1
1,555,784	+				-1.0
1,555,784	+				-0.3
1,555,785	-				+2.6
1,555,790	-				+0.1
1,555,790	-				-0.5
1,555,808	-				+0.2
1,555,808	-				+0.2
1,555,812	-				-3.0
1,555,908	+				-0.3
1,555,908	+				+0.8
1,555,908	+				-1.6
1,555,909	-				+0.7
1,555,909	-				+3.0
1,555,909	-				+0.1
1,555,944	+		IAI47_07365	0.10	-0.9
1,555,944	+		IAI47_07365	0.10	+0.1
1,555,944	+		IAI47_07365	0.10	+1.3
1,555,944	+		IAI47_07365	0.10	+0.8
1,555,944	+		IAI47_07365	0.10	+0.9
1,555,944	+		IAI47_07365	0.10	+0.7
1,555,944	+		IAI47_07365	0.10	+0.7
1,555,944	+		IAI47_07365	0.10	+0.5
1,555,945	-		IAI47_07365	0.11	-1.6
1,555,945	-				+2.2
1,555,946	+		IAI47_07365	0.11	-1.2
1,555,946	+		IAI47_07365	0.11	-0.1
1,555,946	+		IAI47_07365	0.11	-0.8
1,555,946	+		IAI47_07365	0.11	+0.7
1,555,959	+		IAI47_07365	0.12	-1.8
1,555,959	+		IAI47_07365	0.12	-1.2
1,555,959	+		IAI47_07365	0.12	+5.2
1,555,987	+		IAI47_07365	0.14	-0.6
1,555,988	-		IAI47_07365	0.14	+0.0
1,555,988	-		IAI47_07365	0.14	+1.9
1,556,127	+		IAI47_07365	0.25	-0.8
1,556,127	+		IAI47_07365	0.25	+1.7
1,556,127	+		IAI47_07365	0.25	-1.1
1,556,127	+		IAI47_07365	0.25	-0.0
1,556,128	-		IAI47_07365	0.25	+0.0
1,556,128	-		IAI47_07365	0.25	+2.7
1,556,128	-		IAI47_07365	0.25	-0.3
1,556,165	+		IAI47_07365	0.28	-1.2
1,556,165	+		IAI47_07365	0.28	-0.6
1,556,165	+		IAI47_07365	0.28	+1.5
1,556,187	+		IAI47_07365	0.29	+1.2
1,556,188	-		IAI47_07365	0.30	+0.5
1,556,188	-		IAI47_07365	0.30	+0.7
1,556,188	-		IAI47_07365	0.30	-0.9
1,556,188	-		IAI47_07365	0.30	-0.7
1,556,195	+		IAI47_07365	0.30	-0.1
1,556,196	-		IAI47_07365	0.30	+0.7
1,556,196	-		IAI47_07365	0.30	+3.2
1,556,249	+		IAI47_07365	0.34	+0.7
1,556,293	+		IAI47_07365	0.38	+0.1
1,556,305	-		IAI47_07365	0.39	+2.1
1,556,313	+		IAI47_07365	0.39	+1.1
1,556,314	-		IAI47_07365	0.39	-1.1
1,556,314	-		IAI47_07365	0.39	+1.0
1,556,337	+		IAI47_07365	0.41	+1.6
1,556,337	+		IAI47_07365	0.41	-0.1
1,556,337	+		IAI47_07365	0.41	+0.3
1,556,337	+		IAI47_07365	0.41	-0.3
1,556,337	+		IAI47_07365	0.41	+0.5
1,556,337	+		IAI47_07365	0.41	+0.1
1,556,337	+		IAI47_07365	0.41	+1.9
1,556,337	+		IAI47_07365	0.41	+1.7
1,556,337	+		IAI47_07365	0.41	+0.7
1,556,337	+		IAI47_07365	0.41	-1.1
1,556,337	+		IAI47_07365	0.41	-0.6
1,556,338	-		IAI47_07365	0.41	+1.2
1,556,338	-		IAI47_07365	0.41	+0.7
1,556,338	-		IAI47_07365	0.41	-0.3
1,556,338	-		IAI47_07365	0.41	-0.6
1,556,366	+		IAI47_07365	0.43	+1.6
1,556,367	-		IAI47_07365	0.44	-1.2
1,556,367	-		IAI47_07365	0.44	+0.8
1,556,368	+		IAI47_07365	0.44	-0.9
1,556,368	+		IAI47_07365	0.44	-0.3
1,556,369	-		IAI47_07365	0.44	+1.5
1,556,369	-		IAI47_07365	0.44	+1.8
1,556,369	-		IAI47_07365	0.44	-1.5
1,556,379	+		IAI47_07365	0.44	-0.5
1,556,381	+		IAI47_07365	0.45	-1.6
1,556,381	+		IAI47_07365	0.45	+0.4
1,556,381	+		IAI47_07365	0.45	+0.1
1,556,381	+		IAI47_07365	0.45	-1.2
1,556,381	+		IAI47_07365	0.45	-0.6
1,556,381	+		IAI47_07365	0.45	+0.6
1,556,381	+		IAI47_07365	0.45	-2.0
1,556,381	+		IAI47_07365	0.45	+1.0
1,556,382	-		IAI47_07365	0.45	+2.2
1,556,382	-		IAI47_07365	0.45	-0.2
1,556,382	-		IAI47_07365	0.45	-0.9
1,556,382	-		IAI47_07365	0.45	+1.2
1,556,382	-		IAI47_07365	0.45	-1.1
1,556,382	-		IAI47_07365	0.45	-0.1
1,556,390	+		IAI47_07365	0.45	+0.5
1,556,391	-		IAI47_07365	0.45	+0.0
1,556,391	-		IAI47_07365	0.45	-0.8
1,556,391	-		IAI47_07365	0.45	-1.0
1,556,391	-		IAI47_07365	0.45	+0.3
1,556,399	+		IAI47_07365	0.46	+0.2
1,556,399	+		IAI47_07365	0.46	+2.2
1,556,427	+		IAI47_07365	0.48	+2.1
1,556,493	+		IAI47_07365	0.53	-0.4
1,556,493	+		IAI47_07365	0.53	+1.2
1,556,493	+		IAI47_07365	0.53	+0.3
1,556,494	-		IAI47_07365	0.53	-0.6
1,556,494	-		IAI47_07365	0.53	-0.3
1,556,494	-		IAI47_07365	0.53	+0.6
1,556,494	-		IAI47_07365	0.53	+0.1
1,556,495	+		IAI47_07365	0.54	+1.7
1,556,495	+		IAI47_07365	0.54	+1.3
1,556,495	+		IAI47_07365	0.54	+0.2
1,556,495	+		IAI47_07365	0.54	-2.7
1,556,495	+		IAI47_07365	0.54	+1.8
1,556,496	-		IAI47_07365	0.54	-0.4
1,556,496	-		IAI47_07365	0.54	-1.2
1,556,496	-		IAI47_07365	0.54	-0.1
1,556,496	-		IAI47_07365	0.54	+0.2
1,556,496	-		IAI47_07365	0.54	+0.2
1,556,496	-		IAI47_07365	0.54	-1.5
1,556,496	-		IAI47_07365	0.54	-2.2
1,556,496	-		IAI47_07365	0.54	+0.3
1,556,537	+		IAI47_07365	0.57	+1.2
1,556,538	-		IAI47_07365	0.57	-0.1
1,556,582	+		IAI47_07365	0.60	+0.7
1,556,583	-		IAI47_07365	0.60	+0.8
1,556,583	-		IAI47_07365	0.60	+1.3
1,556,583	-		IAI47_07365	0.60	-0.3
1,556,616	+		IAI47_07365	0.63	+3.7
1,556,617	-		IAI47_07365	0.63	+0.8
1,556,617	-		IAI47_07365	0.63	-0.4
1,556,617	-		IAI47_07365	0.63	+1.1
1,556,619	+		IAI47_07365	0.63	+0.0
1,556,619	+		IAI47_07365	0.63	-0.2
1,556,620	-		IAI47_07365	0.63	-0.8
1,556,630	+		IAI47_07365	0.64	+0.5
1,556,631	-		IAI47_07365	0.64	-2.4
1,556,649	+		IAI47_07365	0.66	-0.9
1,556,649	+		IAI47_07365	0.66	-1.6
1,556,650	-		IAI47_07365	0.66	-0.2
1,556,650	-		IAI47_07365	0.66	-0.1
1,556,705	+		IAI47_07365	0.70	-0.3
1,556,705	+		IAI47_07365	0.70	+1.2
1,556,705	+		IAI47_07365	0.70	-0.3
1,556,705	+		IAI47_07365	0.70	+0.7
1,556,705	+		IAI47_07365	0.70	-0.8
1,556,706	-		IAI47_07365	0.70	+1.5
1,556,706	-		IAI47_07365	0.70	-0.1
1,556,706	-		IAI47_07365	0.70	-0.2
1,556,706	-		IAI47_07365	0.70	-1.1
1,556,706	-		IAI47_07365	0.70	+1.1
1,556,770	+		IAI47_07365	0.75	+1.1
1,556,770	+		IAI47_07365	0.75	-0.6
1,556,770	+		IAI47_07365	0.75	-1.5
1,556,771	-		IAI47_07365	0.75	+1.0
1,556,771	-		IAI47_07365	0.75	-0.3
1,556,772	+		IAI47_07365	0.75	+0.5
1,556,772	+		IAI47_07365	0.75	+0.3
1,556,772	+		IAI47_07365	0.75	-0.2
1,556,772	+		IAI47_07365	0.75	+1.7
1,556,773	-		IAI47_07365	0.75	-1.2
1,556,773	-		IAI47_07365	0.75	+0.7
1,556,788	-		IAI47_07365	0.76	-1.6
1,556,788	-		IAI47_07365	0.76	+0.0
1,556,814	+		IAI47_07365	0.78	-2.3
1,556,814	+		IAI47_07365	0.78	+2.2
1,556,814	+		IAI47_07365	0.78	+0.2
1,556,814	+		IAI47_07365	0.78	-0.8
1,556,814	+		IAI47_07365	0.78	-0.6
1,556,815	-		IAI47_07365	0.79	-0.9
1,556,817	+		IAI47_07365	0.79	+0.7
1,556,817	+		IAI47_07365	0.79	-0.8
1,556,818	-		IAI47_07365	0.79	+0.1
1,556,818	-		IAI47_07365	0.79	-0.6
1,556,818	-		IAI47_07365	0.79	+1.2
1,556,833	-		IAI47_07365	0.80	-0.3
1,556,837	+		IAI47_07365	0.80	-0.0
1,556,838	-		IAI47_07365	0.80	+0.7
1,556,838	-		IAI47_07365	0.80	-0.1
1,556,838	-		IAI47_07365	0.80	+1.7
1,556,850	+		IAI47_07365	0.81	-2.0
1,556,850	+		IAI47_07365	0.81	-0.3
1,556,851	-		IAI47_07365	0.81	+2.0
1,556,872	-		IAI47_07365	0.83	+0.7
1,556,886	+		IAI47_07365	0.84	+0.9
1,556,886	+		IAI47_07365	0.84	+2.7
1,556,886	+		IAI47_07365	0.84	+1.0
1,556,887	-		IAI47_07365	0.84	+0.4
1,556,887	-		IAI47_07365	0.84	+1.7
1,556,904	+		IAI47_07365	0.86	+1.7
1,556,904	+		IAI47_07365	0.86	-0.3
1,556,904	+		IAI47_07365	0.86	-2.9
1,556,904	+		IAI47_07365	0.86	-0.9
1,556,905	-		IAI47_07365	0.86	-0.3
1,556,905	-		IAI47_07365	0.86	+0.5
1,556,905	-		IAI47_07365	0.86	-0.8
1,556,907	+		IAI47_07365	0.86	+0.3
1,556,907	+		IAI47_07365	0.86	-1.0
1,556,907	+		IAI47_07365	0.86	-0.3
1,556,907	+		IAI47_07365	0.86	-1.8
1,556,907	+		IAI47_07365	0.86	-0.6
1,556,908	-		IAI47_07365	0.86	+0.2
1,556,908	-		IAI47_07365	0.86	+1.6
1,556,908	-		IAI47_07365	0.86	+0.0
1,556,908	-		IAI47_07365	0.86	-1.0
1,557,023	+				+1.2
1,557,023	+				+1.4
1,557,024	-				+0.5
1,557,047	-				-0.3
1,557,074	+				+1.5
1,557,074	+				+0.8
1,557,079	+				-0.6
1,557,079	+				-0.8
1,557,111	-				+1.3
1,557,114	-				-0.1
1,557,114	-				-0.1
1,557,215	-				+0.6
1,557,215	-				-1.9
1,557,224	+				+0.1
1,557,224	+				-0.3
1,557,229	-				-0.1
1,557,231	+				-0.2
1,557,234	+				+1.1
1,557,234	+				-0.9
1,557,235	-				+0.5
1,557,248	+				-0.1
1,557,249	-				-0.1
1,557,249	-				+0.2
1,557,249	-				+0.9
1,557,255	+				-0.1
1,557,256	-				-0.3
1,557,303	+				-0.3
1,557,304	-				+0.1
1,557,304	-				+0.7
1,557,304	-				-0.6
1,557,304	-				+0.7
1,557,304	-				-0.6
1,557,365	+		IAI47_07370	0.10	+0.2
1,557,365	+		IAI47_07370	0.10	-1.2
1,557,383	-		IAI47_07370	0.12	+3.2
1,557,383	-		IAI47_07370	0.12	-1.5
1,557,432	+		IAI47_07370	0.15	+0.8
1,557,433	-		IAI47_07370	0.15	+1.4
1,557,530	+		IAI47_07370	0.22	+0.8
1,557,558	-		IAI47_07370	0.24	-0.2
1,557,558	-		IAI47_07370	0.24	-1.0
1,557,564	-		IAI47_07370	0.25	+0.1
1,557,578	-		IAI47_07370	0.26	+0.0
1,557,591	-		IAI47_07370	0.26	-1.5
1,557,604	-		IAI47_07370	0.27	-2.0
1,557,604	-		IAI47_07370	0.27	+0.5
1,557,607	+		IAI47_07370	0.28	-0.6
1,557,607	+		IAI47_07370	0.28	+1.5
1,557,607	+		IAI47_07370	0.28	-0.5
1,557,607	+		IAI47_07370	0.28	+0.8
1,557,629	+		IAI47_07370	0.29	-0.9
1,557,630	-		IAI47_07370	0.29	+0.6
1,557,786	+		IAI47_07370	0.40	+0.7
1,557,786	+		IAI47_07370	0.40	-0.6
1,557,832	+		IAI47_07370	0.44	-0.5
1,557,832	+		IAI47_07370	0.44	-1.3
1,557,833	-		IAI47_07370	0.44	-0.2
1,557,833	-		IAI47_07370	0.44	+0.4
1,557,874	-		IAI47_07370	0.47	-0.4
1,557,998	+		IAI47_07370	0.55	-2.0
1,557,999	-		IAI47_07370	0.56	+0.1
1,558,012	+		IAI47_07370	0.56	-0.3
1,558,013	-		IAI47_07370	0.57	-1.5