Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18380

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18370 and BWI76_RS18375 are separated by 49 nucleotidesBWI76_RS18375 and BWI76_RS18380 are separated by 454 nucleotidesBWI76_RS18380 and BWI76_RS18385 are separated by 41 nucleotidesBWI76_RS18385 and BWI76_RS18390 are separated by 132 nucleotidesBWI76_RS18390 and BWI76_RS18395 are separated by 329 nucleotides BWI76_RS18370: BWI76_RS18370 - alpha-amylase, at 3,813,344 to 3,814,831 _RS18370 BWI76_RS18375: BWI76_RS18375 - hypothetical protein, at 3,814,881 to 3,815,294 _RS18375 BWI76_RS18380: BWI76_RS18380 - helix-turn-helix transcriptional regulator, at 3,815,749 to 3,816,372 _RS18380 BWI76_RS18385: BWI76_RS18385 - hypothetical protein, at 3,816,414 to 3,816,602 _RS18385 BWI76_RS18390: BWI76_RS18390 - hypothetical protein, at 3,816,735 to 3,816,950 _RS18390 BWI76_RS18395: BWI76_RS18395 - diguanylate cyclase, at 3,817,280 to 3,818,947 _RS18395 Position (kb) 3815 3816 3817Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3814.838 kb on + strandat 3814.929 kb on - strand, within BWI76_RS18375at 3815.114 kb on + strand, within BWI76_RS18375at 3815.114 kb on + strand, within BWI76_RS18375at 3815.122 kb on - strand, within BWI76_RS18375at 3815.149 kb on - strand, within BWI76_RS18375at 3815.173 kb on + strand, within BWI76_RS18375at 3815.259 kb on + strandat 3815.267 kb on - strandat 3815.267 kb on - strandat 3815.337 kb on + strandat 3815.345 kb on - strandat 3815.354 kb on - strandat 3815.470 kb on + strandat 3815.635 kb on + strandat 3815.638 kb on - strandat 3815.644 kb on + strandat 3815.644 kb on + strandat 3815.644 kb on + strandat 3815.644 kb on + strandat 3815.644 kb on + strandat 3815.652 kb on - strandat 3815.652 kb on - strandat 3815.748 kb on - strandat 3815.753 kb on - strandat 3815.777 kb on + strandat 3815.791 kb on + strandat 3815.797 kb on + strandat 3815.797 kb on + strandat 3815.798 kb on - strandat 3815.802 kb on + strandat 3815.814 kb on - strand, within BWI76_RS18380at 3815.842 kb on + strand, within BWI76_RS18380at 3815.842 kb on + strand, within BWI76_RS18380at 3815.842 kb on + strand, within BWI76_RS18380at 3815.844 kb on + strand, within BWI76_RS18380at 3815.850 kb on - strand, within BWI76_RS18380at 3815.850 kb on - strand, within BWI76_RS18380at 3815.852 kb on - strand, within BWI76_RS18380at 3815.863 kb on - strand, within BWI76_RS18380at 3815.872 kb on - strand, within BWI76_RS18380at 3815.878 kb on - strand, within BWI76_RS18380at 3815.880 kb on + strand, within BWI76_RS18380at 3815.891 kb on - strand, within BWI76_RS18380at 3815.907 kb on - strand, within BWI76_RS18380at 3815.932 kb on + strand, within BWI76_RS18380at 3815.967 kb on + strand, within BWI76_RS18380at 3815.970 kb on + strand, within BWI76_RS18380at 3815.973 kb on - strand, within BWI76_RS18380at 3815.978 kb on - strand, within BWI76_RS18380at 3815.980 kb on - strand, within BWI76_RS18380at 3816.001 kb on - strand, within BWI76_RS18380at 3816.001 kb on - strand, within BWI76_RS18380at 3816.067 kb on - strand, within BWI76_RS18380at 3816.068 kb on - strandat 3816.120 kb on + strand, within BWI76_RS18380at 3816.138 kb on + strandat 3816.154 kb on - strand, within BWI76_RS18380at 3816.156 kb on + strand, within BWI76_RS18380at 3816.156 kb on + strand, within BWI76_RS18380at 3816.158 kb on + strand, within BWI76_RS18380at 3816.158 kb on + strand, within BWI76_RS18380at 3816.166 kb on - strand, within BWI76_RS18380at 3816.166 kb on - strand, within BWI76_RS18380at 3816.173 kb on + strand, within BWI76_RS18380at 3816.181 kb on - strand, within BWI76_RS18380at 3816.211 kb on + strand, within BWI76_RS18380at 3816.212 kb on - strand, within BWI76_RS18380at 3816.216 kb on + strand, within BWI76_RS18380at 3816.216 kb on + strand, within BWI76_RS18380at 3816.216 kb on + strand, within BWI76_RS18380at 3816.221 kb on + strand, within BWI76_RS18380at 3816.221 kb on + strand, within BWI76_RS18380at 3816.226 kb on + strand, within BWI76_RS18380at 3816.229 kb on - strand, within BWI76_RS18380at 3816.229 kb on - strand, within BWI76_RS18380at 3816.231 kb on + strand, within BWI76_RS18380at 3816.231 kb on + strand, within BWI76_RS18380at 3816.231 kb on + strand, within BWI76_RS18380at 3816.231 kb on + strand, within BWI76_RS18380at 3816.231 kb on + strandat 3816.236 kb on + strand, within BWI76_RS18380at 3816.237 kb on + strand, within BWI76_RS18380at 3816.239 kb on - strand, within BWI76_RS18380at 3816.239 kb on - strand, within BWI76_RS18380at 3816.239 kb on - strand, within BWI76_RS18380at 3816.243 kb on + strand, within BWI76_RS18380at 3816.243 kb on + strand, within BWI76_RS18380at 3816.244 kb on - strand, within BWI76_RS18380at 3816.251 kb on - strandat 3816.251 kb on - strand, within BWI76_RS18380at 3816.259 kb on - strand, within BWI76_RS18380at 3816.275 kb on - strandat 3816.320 kb on + strandat 3816.320 kb on + strandat 3816.320 kb on + strandat 3816.320 kb on + strandat 3816.320 kb on + strandat 3816.320 kb on + strandat 3816.320 kb on + strandat 3816.328 kb on - strandat 3816.328 kb on - strandat 3816.328 kb on - strandat 3816.363 kb on + strandat 3816.366 kb on + strandat 3816.515 kb on - strand, within BWI76_RS18385at 3816.637 kb on - strandat 3816.637 kb on - strandat 3816.637 kb on - strandat 3816.637 kb on - strandat 3816.648 kb on + strandat 3816.648 kb on + strandat 3816.656 kb on - strandat 3816.722 kb on - strandat 3816.777 kb on - strand, within BWI76_RS18390at 3816.864 kb on - strand, within BWI76_RS18390at 3816.954 kb on - strandat 3817.152 kb on + strandat 3817.160 kb on - strandat 3817.285 kb on + strandat 3817.293 kb on - strandat 3817.298 kb on - strandat 3817.313 kb on - strandat 3817.325 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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3,814,838 + +0.3
3,814,929 - BWI76_RS18375 0.12 -0.5
3,815,114 + BWI76_RS18375 0.56 -0.1
3,815,114 + BWI76_RS18375 0.56 -0.7
3,815,122 - BWI76_RS18375 0.58 -0.1
3,815,149 - BWI76_RS18375 0.65 -0.1
3,815,173 + BWI76_RS18375 0.71 -3.0
3,815,259 + +0.4
3,815,267 - -0.7
3,815,267 - -0.8
3,815,337 + -1.3
3,815,345 - +0.1
3,815,354 - -1.2
3,815,470 + +0.6
3,815,635 + -0.6
3,815,638 - +1.7
3,815,644 + +0.5
3,815,644 + +0.1
3,815,644 + +0.3
3,815,644 + +1.0
3,815,644 + -0.1
3,815,652 - -0.1
3,815,652 - -0.0
3,815,748 - +0.4
3,815,753 - -0.5
3,815,777 + -0.3
3,815,791 + -0.4
3,815,797 + +0.1
3,815,797 + -0.3
3,815,798 - +1.5
3,815,802 + +0.2
3,815,814 - BWI76_RS18380 0.10 +0.3
3,815,842 + BWI76_RS18380 0.15 +0.4
3,815,842 + BWI76_RS18380 0.15 -0.3
3,815,842 + BWI76_RS18380 0.15 -0.1
3,815,844 + BWI76_RS18380 0.15 +0.5
3,815,850 - BWI76_RS18380 0.16 +0.5
3,815,850 - BWI76_RS18380 0.16 -0.9
3,815,852 - BWI76_RS18380 0.17 +0.7
3,815,863 - BWI76_RS18380 0.18 +0.2
3,815,872 - BWI76_RS18380 0.20 +0.1
3,815,878 - BWI76_RS18380 0.21 +0.3
3,815,880 + BWI76_RS18380 0.21 +0.8
3,815,891 - BWI76_RS18380 0.23 -1.0
3,815,907 - BWI76_RS18380 0.25 -0.0
3,815,932 + BWI76_RS18380 0.29 +0.7
3,815,967 + BWI76_RS18380 0.35 +1.5
3,815,970 + BWI76_RS18380 0.35 -0.0
3,815,973 - BWI76_RS18380 0.36 +0.7
3,815,978 - BWI76_RS18380 0.37 -2.1
3,815,980 - BWI76_RS18380 0.37 -1.9
3,816,001 - BWI76_RS18380 0.40 -0.1
3,816,001 - BWI76_RS18380 0.40 -0.7
3,816,067 - BWI76_RS18380 0.51 -0.2
3,816,068 - +0.1
3,816,120 + BWI76_RS18380 0.59 +0.5
3,816,138 + +1.2
3,816,154 - BWI76_RS18380 0.65 -0.4
3,816,156 + BWI76_RS18380 0.65 -0.8
3,816,156 + BWI76_RS18380 0.65 +0.5
3,816,158 + BWI76_RS18380 0.66 +0.5
3,816,158 + BWI76_RS18380 0.66 +2.8
3,816,166 - BWI76_RS18380 0.67 -0.7
3,816,166 - BWI76_RS18380 0.67 +0.5
3,816,173 + BWI76_RS18380 0.68 +0.2
3,816,181 - BWI76_RS18380 0.69 -2.3
3,816,211 + BWI76_RS18380 0.74 +0.3
3,816,212 - BWI76_RS18380 0.74 -1.3
3,816,216 + BWI76_RS18380 0.75 -0.3
3,816,216 + BWI76_RS18380 0.75 +0.6
3,816,216 + BWI76_RS18380 0.75 +1.0
3,816,221 + BWI76_RS18380 0.76 -1.5
3,816,221 + BWI76_RS18380 0.76 +0.2
3,816,226 + BWI76_RS18380 0.76 -1.2
3,816,229 - BWI76_RS18380 0.77 -0.8
3,816,229 - BWI76_RS18380 0.77 +0.4
3,816,231 + BWI76_RS18380 0.77 +2.2
3,816,231 + BWI76_RS18380 0.77 +0.1
3,816,231 + BWI76_RS18380 0.77 -1.0
3,816,231 + BWI76_RS18380 0.77 +1.1
3,816,231 + +0.5
3,816,236 + BWI76_RS18380 0.78 +0.4
3,816,237 + BWI76_RS18380 0.78 +2.2
3,816,239 - BWI76_RS18380 0.79 +0.7
3,816,239 - BWI76_RS18380 0.79 +1.4
3,816,239 - BWI76_RS18380 0.79 +2.1
3,816,243 + BWI76_RS18380 0.79 -0.3
3,816,243 + BWI76_RS18380 0.79 +0.6
3,816,244 - BWI76_RS18380 0.79 -1.0
3,816,251 - +4.5
3,816,251 - BWI76_RS18380 0.80 +1.3
3,816,259 - BWI76_RS18380 0.82 -1.0
3,816,275 - +2.5
3,816,320 + +1.0
3,816,320 + +0.5
3,816,320 + -1.4
3,816,320 + +0.5
3,816,320 + +0.6
3,816,320 + -0.0
3,816,320 + +1.2
3,816,328 - -1.9
3,816,328 - -2.2
3,816,328 - +0.8
3,816,363 + +0.1
3,816,366 + -2.4
3,816,515 - BWI76_RS18385 0.53 +0.1
3,816,637 - -0.6
3,816,637 - +1.8
3,816,637 - +0.5
3,816,637 - +1.2
3,816,648 + -0.6
3,816,648 + +0.1
3,816,656 - +0.7
3,816,722 - -0.2
3,816,777 - BWI76_RS18390 0.19 +0.2
3,816,864 - BWI76_RS18390 0.60 +0.4
3,816,954 - -1.4
3,817,152 + -0.8
3,817,160 - -0.1
3,817,285 + -0.1
3,817,293 - -0.0
3,817,298 - +0.2
3,817,313 - -0.2
3,817,325 + +0.3

Or see this region's nucleotide sequence