Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06580

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06575 and BWI76_RS06580 are separated by 115 nucleotidesBWI76_RS06580 and BWI76_RS06585 are separated by 42 nucleotides BWI76_RS06575: BWI76_RS06575 - cysteine synthase, at 1,382,307 to 1,383,359 _RS06575 BWI76_RS06580: BWI76_RS06580 - transcriptional regulator, at 1,383,475 to 1,383,933 _RS06580 BWI76_RS06585: BWI76_RS06585 - multidrug ABC transporter permease/ATP-binding protein, at 1,383,976 to 1,385,748 _RS06585 Position (kb) 1383 1384Strain fitness (log2 ratio) -2 -1 0 1 2at 1382.751 kb on - strand, within BWI76_RS06575at 1382.751 kb on - strand, within BWI76_RS06575at 1382.869 kb on + strand, within BWI76_RS06575at 1382.917 kb on - strand, within BWI76_RS06575at 1382.926 kb on - strand, within BWI76_RS06575at 1383.246 kb on + strand, within BWI76_RS06575at 1383.398 kb on - strandat 1383.562 kb on - strand, within BWI76_RS06580at 1383.567 kb on - strand, within BWI76_RS06580at 1383.689 kb on - strand, within BWI76_RS06580at 1383.964 kb on + strandat 1384.045 kb on - strandat 1384.241 kb on + strand, within BWI76_RS06585at 1384.397 kb on + strand, within BWI76_RS06585at 1384.402 kb on + strand, within BWI76_RS06585at 1384.410 kb on - strand, within BWI76_RS06585at 1384.410 kb on - strand, within BWI76_RS06585at 1384.736 kb on + strand, within BWI76_RS06585at 1384.774 kb on - strand, within BWI76_RS06585at 1384.871 kb on + strand, within BWI76_RS06585

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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1,382,751 - BWI76_RS06575 0.42 -0.1
1,382,751 - BWI76_RS06575 0.42 -0.2
1,382,869 + BWI76_RS06575 0.53 +2.5
1,382,917 - BWI76_RS06575 0.58 +0.6
1,382,926 - BWI76_RS06575 0.59 -0.3
1,383,246 + BWI76_RS06575 0.89 -0.1
1,383,398 - +0.4
1,383,562 - BWI76_RS06580 0.19 -2.6
1,383,567 - BWI76_RS06580 0.20 +0.4
1,383,689 - BWI76_RS06580 0.47 -2.0
1,383,964 + +0.8
1,384,045 - -0.8
1,384,241 + BWI76_RS06585 0.15 -0.0
1,384,397 + BWI76_RS06585 0.24 +0.7
1,384,402 + BWI76_RS06585 0.24 +0.5
1,384,410 - BWI76_RS06585 0.24 +0.1
1,384,410 - BWI76_RS06585 0.24 +0.9
1,384,736 + BWI76_RS06585 0.43 -0.2
1,384,774 - BWI76_RS06585 0.45 -0.2
1,384,871 + BWI76_RS06585 0.50 +0.9

Or see this region's nucleotide sequence