Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26245 and AO353_26250 overlap by 26 nucleotides AO353_26250 and AO353_26255 overlap by 4 nucleotides
AO353_26245: AO353_26245 - phage head morphogenesis protein, at 5,769,730 to 5,770,815
_26245
AO353_26250: AO353_26250 - hypothetical protein, at 5,770,790 to 5,772,205
_26250
AO353_26255: AO353_26255 - terminase, at 5,772,202 to 5,773,689
_26255
Position (kb) 5770
5771
5772
5773 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5769.856 kb on + strand, within AO353_26245 at 5769.924 kb on - strand, within AO353_26245 at 5769.924 kb on - strand, within AO353_26245 at 5769.926 kb on + strand, within AO353_26245 at 5769.927 kb on - strand, within AO353_26245 at 5769.927 kb on - strand, within AO353_26245 at 5769.927 kb on - strand, within AO353_26245 at 5769.997 kb on + strand at 5769.997 kb on + strand, within AO353_26245 at 5769.998 kb on - strand, within AO353_26245 at 5769.998 kb on - strand, within AO353_26245 at 5769.998 kb on - strand, within AO353_26245 at 5770.550 kb on + strand at 5770.550 kb on + strand, within AO353_26245 at 5770.550 kb on + strand, within AO353_26245 at 5770.550 kb on + strand, within AO353_26245 at 5770.550 kb on + strand, within AO353_26245 at 5770.551 kb on - strand, within AO353_26245 at 5770.551 kb on - strand, within AO353_26245 at 5770.551 kb on - strand, within AO353_26245 at 5770.551 kb on - strand, within AO353_26245 at 5770.551 kb on - strand, within AO353_26245 at 5770.551 kb on - strand, within AO353_26245 at 5770.606 kb on - strand, within AO353_26245 at 5770.661 kb on + strand, within AO353_26245 at 5770.923 kb on + strand at 5770.924 kb on - strand at 5770.924 kb on - strand at 5771.058 kb on + strand, within AO353_26250 at 5771.058 kb on + strand, within AO353_26250 at 5771.058 kb on + strand, within AO353_26250 at 5771.059 kb on - strand, within AO353_26250 at 5771.059 kb on - strand, within AO353_26250 at 5771.059 kb on - strand, within AO353_26250 at 5771.088 kb on + strand, within AO353_26250 at 5771.088 kb on + strand, within AO353_26250 at 5771.088 kb on + strand, within AO353_26250 at 5771.089 kb on - strand, within AO353_26250 at 5771.089 kb on - strand, within AO353_26250 at 5771.108 kb on + strand, within AO353_26250 at 5771.108 kb on + strand, within AO353_26250 at 5771.108 kb on + strand, within AO353_26250 at 5771.109 kb on - strand at 5771.170 kb on + strand, within AO353_26250 at 5771.170 kb on + strand, within AO353_26250 at 5771.170 kb on + strand, within AO353_26250 at 5771.171 kb on - strand, within AO353_26250 at 5771.171 kb on - strand, within AO353_26250 at 5771.171 kb on - strand, within AO353_26250 at 5771.171 kb on - strand, within AO353_26250 at 5771.171 kb on - strand, within AO353_26250 at 5771.171 kb on - strand, within AO353_26250 at 5771.171 kb on - strand, within AO353_26250 at 5771.194 kb on + strand, within AO353_26250 at 5771.195 kb on - strand, within AO353_26250 at 5771.245 kb on + strand, within AO353_26250 at 5771.325 kb on + strand, within AO353_26250 at 5771.325 kb on + strand, within AO353_26250 at 5771.325 kb on + strand, within AO353_26250 at 5771.325 kb on + strand, within AO353_26250 at 5771.325 kb on + strand, within AO353_26250 at 5771.325 kb on + strand, within AO353_26250 at 5771.325 kb on + strand, within AO353_26250 at 5771.326 kb on - strand, within AO353_26250 at 5771.326 kb on - strand, within AO353_26250 at 5771.326 kb on - strand, within AO353_26250 at 5771.418 kb on + strand, within AO353_26250 at 5771.418 kb on + strand, within AO353_26250 at 5771.419 kb on - strand, within AO353_26250 at 5771.467 kb on - strand, within AO353_26250 at 5771.545 kb on + strand, within AO353_26250 at 5771.574 kb on - strand, within AO353_26250 at 5771.784 kb on + strand, within AO353_26250 at 5771.785 kb on - strand, within AO353_26250 at 5771.838 kb on + strand, within AO353_26250 at 5771.839 kb on - strand, within AO353_26250 at 5771.895 kb on + strand, within AO353_26250 at 5771.895 kb on + strand, within AO353_26250 at 5771.895 kb on + strand, within AO353_26250 at 5771.895 kb on + strand, within AO353_26250 at 5771.895 kb on + strand, within AO353_26250 at 5771.896 kb on - strand, within AO353_26250 at 5771.896 kb on - strand, within AO353_26250 at 5771.896 kb on - strand, within AO353_26250 at 5771.934 kb on + strand, within AO353_26250 at 5771.935 kb on - strand, within AO353_26250 at 5771.935 kb on - strand, within AO353_26250 at 5772.085 kb on + strand at 5772.085 kb on + strand at 5772.085 kb on + strand at 5772.085 kb on + strand at 5772.086 kb on - strand at 5772.086 kb on - strand at 5772.093 kb on + strand at 5772.093 kb on + strand at 5772.093 kb on + strand at 5772.093 kb on + strand at 5772.094 kb on - strand at 5772.094 kb on - strand at 5772.094 kb on - strand at 5772.225 kb on + strand at 5772.225 kb on + strand at 5772.225 kb on + strand at 5772.256 kb on + strand at 5772.415 kb on + strand, within AO353_26255 at 5772.416 kb on - strand, within AO353_26255 at 5772.482 kb on + strand, within AO353_26255 at 5772.482 kb on + strand, within AO353_26255 at 5772.482 kb on + strand, within AO353_26255 at 5772.483 kb on - strand, within AO353_26255 at 5772.483 kb on - strand, within AO353_26255 at 5772.483 kb on - strand, within AO353_26255 at 5772.590 kb on + strand, within AO353_26255 at 5772.591 kb on - strand, within AO353_26255 at 5772.591 kb on - strand, within AO353_26255 at 5772.623 kb on + strand, within AO353_26255 at 5772.623 kb on + strand, within AO353_26255 at 5772.624 kb on - strand, within AO353_26255 at 5772.624 kb on - strand, within AO353_26255 at 5772.624 kb on - strand, within AO353_26255 at 5772.653 kb on + strand, within AO353_26255 at 5772.654 kb on - strand, within AO353_26255 at 5772.656 kb on + strand, within AO353_26255 at 5772.657 kb on - strand, within AO353_26255 at 5772.671 kb on + strand, within AO353_26255 at 5772.815 kb on + strand, within AO353_26255 at 5772.818 kb on + strand, within AO353_26255 at 5772.818 kb on + strand, within AO353_26255 at 5772.818 kb on + strand, within AO353_26255 at 5772.818 kb on + strand, within AO353_26255 at 5772.818 kb on + strand, within AO353_26255 at 5772.818 kb on + strand, within AO353_26255 at 5772.819 kb on - strand, within AO353_26255 at 5772.819 kb on - strand, within AO353_26255 at 5772.912 kb on - strand, within AO353_26255 at 5772.971 kb on + strand, within AO353_26255 at 5772.971 kb on + strand, within AO353_26255 at 5772.972 kb on - strand, within AO353_26255 at 5773.019 kb on + strand, within AO353_26255 at 5773.128 kb on - strand, within AO353_26255
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 5,769,856 + AO353_26245 0.12 -0.8 5,769,924 - AO353_26245 0.18 -0.4 5,769,924 - AO353_26245 0.18 +3.1 5,769,926 + AO353_26245 0.18 +1.6 5,769,927 - AO353_26245 0.18 +0.7 5,769,927 - AO353_26245 0.18 -0.0 5,769,927 - AO353_26245 0.18 +1.9 5,769,997 + +0.6 5,769,997 + AO353_26245 0.25 +2.3 5,769,998 - AO353_26245 0.25 -1.5 5,769,998 - AO353_26245 0.25 -2.2 5,769,998 - AO353_26245 0.25 -0.4 5,770,550 + -0.1 5,770,550 + AO353_26245 0.76 -3.1 5,770,550 + AO353_26245 0.76 -0.4 5,770,550 + AO353_26245 0.76 -1.0 5,770,550 + AO353_26245 0.76 -0.2 5,770,551 - AO353_26245 0.76 +2.3 5,770,551 - AO353_26245 0.76 -1.1 5,770,551 - AO353_26245 0.76 +0.6 5,770,551 - AO353_26245 0.76 -0.1 5,770,551 - AO353_26245 0.76 +1.5 5,770,551 - AO353_26245 0.76 -0.6 5,770,606 - AO353_26245 0.81 +2.0 5,770,661 + AO353_26245 0.86 +0.3 5,770,923 + +0.6 5,770,924 - +1.2 5,770,924 - +0.7 5,771,058 + AO353_26250 0.19 -1.6 5,771,058 + AO353_26250 0.19 -1.0 5,771,058 + AO353_26250 0.19 +1.1 5,771,059 - AO353_26250 0.19 -1.5 5,771,059 - AO353_26250 0.19 +1.2 5,771,059 - AO353_26250 0.19 -2.0 5,771,088 + AO353_26250 0.21 -1.2 5,771,088 + AO353_26250 0.21 -0.7 5,771,088 + AO353_26250 0.21 +0.3 5,771,089 - AO353_26250 0.21 -0.9 5,771,089 - AO353_26250 0.21 -0.5 5,771,108 + AO353_26250 0.22 +0.4 5,771,108 + AO353_26250 0.22 -0.9 5,771,108 + AO353_26250 0.22 -0.6 5,771,109 - +2.2 5,771,170 + AO353_26250 0.27 +0.9 5,771,170 + AO353_26250 0.27 -0.1 5,771,170 + AO353_26250 0.27 -0.9 5,771,171 - AO353_26250 0.27 +0.5 5,771,171 - AO353_26250 0.27 -1.9 5,771,171 - AO353_26250 0.27 -0.8 5,771,171 - AO353_26250 0.27 -1.1 5,771,171 - AO353_26250 0.27 -0.2 5,771,171 - AO353_26250 0.27 -2.1 5,771,171 - AO353_26250 0.27 +1.0 5,771,194 + AO353_26250 0.29 -0.4 5,771,195 - AO353_26250 0.29 +0.9 5,771,245 + AO353_26250 0.32 +0.0 5,771,325 + AO353_26250 0.38 +1.2 5,771,325 + AO353_26250 0.38 +1.7 5,771,325 + AO353_26250 0.38 -0.1 5,771,325 + AO353_26250 0.38 +0.6 5,771,325 + AO353_26250 0.38 -2.8 5,771,325 + AO353_26250 0.38 -0.7 5,771,325 + AO353_26250 0.38 +1.9 5,771,326 - AO353_26250 0.38 -0.3 5,771,326 - AO353_26250 0.38 -2.8 5,771,326 - AO353_26250 0.38 -1.1 5,771,418 + AO353_26250 0.44 -0.7 5,771,418 + AO353_26250 0.44 -0.7 5,771,419 - AO353_26250 0.44 -0.5 5,771,467 - AO353_26250 0.48 +0.6 5,771,545 + AO353_26250 0.53 -1.1 5,771,574 - AO353_26250 0.55 -2.8 5,771,784 + AO353_26250 0.70 -1.7 5,771,785 - AO353_26250 0.70 +1.0 5,771,838 + AO353_26250 0.74 +0.2 5,771,839 - AO353_26250 0.74 +1.7 5,771,895 + AO353_26250 0.78 +0.1 5,771,895 + AO353_26250 0.78 +0.2 5,771,895 + AO353_26250 0.78 -1.7 5,771,895 + AO353_26250 0.78 +0.9 5,771,895 + AO353_26250 0.78 +2.8 5,771,896 - AO353_26250 0.78 +4.6 5,771,896 - AO353_26250 0.78 -2.5 5,771,896 - AO353_26250 0.78 +0.8 5,771,934 + AO353_26250 0.81 -0.8 5,771,935 - AO353_26250 0.81 -3.5 5,771,935 - AO353_26250 0.81 -1.5 5,772,085 + -1.3 5,772,085 + +0.0 5,772,085 + -1.9 5,772,085 + +3.1 5,772,086 - +1.5 5,772,086 - -2.4 5,772,093 + -0.5 5,772,093 + -1.8 5,772,093 + -0.7 5,772,093 + +1.2 5,772,094 - -0.1 5,772,094 - -0.2 5,772,094 - -2.3 5,772,225 + -0.7 5,772,225 + -1.8 5,772,225 + -2.1 5,772,256 + -0.5 5,772,415 + AO353_26255 0.14 -3.1 5,772,416 - AO353_26255 0.14 -0.0 5,772,482 + AO353_26255 0.19 -1.5 5,772,482 + AO353_26255 0.19 -0.1 5,772,482 + AO353_26255 0.19 +0.7 5,772,483 - AO353_26255 0.19 +0.6 5,772,483 - AO353_26255 0.19 +0.7 5,772,483 - AO353_26255 0.19 +0.4 5,772,590 + AO353_26255 0.26 -1.8 5,772,591 - AO353_26255 0.26 -0.8 5,772,591 - AO353_26255 0.26 -1.1 5,772,623 + AO353_26255 0.28 -0.5 5,772,623 + AO353_26255 0.28 -1.4 5,772,624 - AO353_26255 0.28 +1.3 5,772,624 - AO353_26255 0.28 +1.2 5,772,624 - AO353_26255 0.28 -0.7 5,772,653 + AO353_26255 0.30 -0.0 5,772,654 - AO353_26255 0.30 -0.0 5,772,656 + AO353_26255 0.31 -0.9 5,772,657 - AO353_26255 0.31 -0.6 5,772,671 + AO353_26255 0.32 +1.0 5,772,815 + AO353_26255 0.41 +0.6 5,772,818 + AO353_26255 0.41 -0.9 5,772,818 + AO353_26255 0.41 +2.3 5,772,818 + AO353_26255 0.41 +1.9 5,772,818 + AO353_26255 0.41 +1.4 5,772,818 + AO353_26255 0.41 +0.1 5,772,818 + AO353_26255 0.41 +1.1 5,772,819 - AO353_26255 0.41 +0.7 5,772,819 - AO353_26255 0.41 +0.1 5,772,912 - AO353_26255 0.48 -3.3 5,772,971 + AO353_26255 0.52 +1.9 5,772,971 + AO353_26255 0.52 -0.2 5,772,972 - AO353_26255 0.52 +0.8 5,773,019 + AO353_26255 0.55 +2.4 5,773,128 - AO353_26255 0.62 +0.9
Or see this region's nucleotide sequence