Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19110

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19100 and AO353_19105 are separated by 61 nucleotidesAO353_19105 and AO353_19110 are separated by 64 nucleotidesAO353_19110 and AO353_19115 are separated by 123 nucleotides AO353_19100: AO353_19100 - LysR family transcriptional regulator, at 4,189,701 to 4,190,591 _19100 AO353_19105: AO353_19105 - hypothetical protein, at 4,190,653 to 4,190,868 _19105 AO353_19110: AO353_19110 - cytoplasmic protein, at 4,190,933 to 4,192,162 _19110 AO353_19115: AO353_19115 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 4,192,286 to 4,193,632 _19115 Position (kb) 4190 4191 4192 4193Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4189.956 kb on + strand, within AO353_19100at 4190.145 kb on + strand, within AO353_19100at 4190.145 kb on + strand, within AO353_19100at 4190.145 kb on + strand, within AO353_19100at 4190.145 kb on + strand, within AO353_19100at 4190.145 kb on + strand, within AO353_19100at 4190.145 kb on + strand, within AO353_19100at 4190.145 kb on + strand, within AO353_19100at 4190.145 kb on + strand, within AO353_19100at 4190.145 kb on + strand, within AO353_19100at 4190.146 kb on - strand, within AO353_19100at 4190.146 kb on - strand, within AO353_19100at 4190.146 kb on - strand, within AO353_19100at 4190.146 kb on - strand, within AO353_19100at 4190.146 kb on - strand, within AO353_19100at 4190.146 kb on - strand, within AO353_19100at 4190.146 kb on - strand, within AO353_19100at 4190.191 kb on + strand, within AO353_19100at 4190.239 kb on + strand, within AO353_19100at 4190.239 kb on + strand, within AO353_19100at 4190.239 kb on + strand, within AO353_19100at 4190.239 kb on + strand, within AO353_19100at 4190.239 kb on + strand, within AO353_19100at 4190.239 kb on + strand, within AO353_19100at 4190.240 kb on - strand, within AO353_19100at 4190.240 kb on - strand, within AO353_19100at 4190.240 kb on - strand, within AO353_19100at 4190.240 kb on - strand, within AO353_19100at 4190.240 kb on - strand, within AO353_19100at 4190.240 kb on - strand, within AO353_19100at 4190.240 kb on - strand, within AO353_19100at 4190.240 kb on - strand, within AO353_19100at 4190.240 kb on - strand, within AO353_19100at 4190.240 kb on - strand, within AO353_19100at 4190.240 kb on - strand, within AO353_19100at 4190.240 kb on - strand, within AO353_19100at 4190.240 kb on - strand, within AO353_19100at 4190.545 kb on + strandat 4190.575 kb on + strandat 4190.575 kb on + strandat 4190.576 kb on - strandat 4190.576 kb on - strandat 4190.583 kb on - strandat 4190.608 kb on - strandat 4190.634 kb on + strandat 4190.634 kb on + strandat 4190.634 kb on + strandat 4190.634 kb on + strandat 4190.634 kb on + strandat 4190.634 kb on + strandat 4190.635 kb on - strandat 4190.671 kb on + strandat 4190.671 kb on + strandat 4190.671 kb on + strandat 4190.672 kb on - strandat 4190.672 kb on - strandat 4190.881 kb on + strandat 4190.905 kb on + strandat 4190.906 kb on - strandat 4190.906 kb on - strandat 4191.107 kb on + strand, within AO353_19110at 4191.107 kb on + strand, within AO353_19110at 4191.107 kb on + strand, within AO353_19110at 4191.108 kb on - strand, within AO353_19110at 4191.108 kb on - strand, within AO353_19110at 4191.137 kb on + strand, within AO353_19110at 4191.137 kb on + strand, within AO353_19110at 4191.137 kb on + strand, within AO353_19110at 4191.138 kb on - strand, within AO353_19110at 4191.138 kb on - strand, within AO353_19110at 4191.187 kb on + strand, within AO353_19110at 4191.187 kb on + strand, within AO353_19110at 4191.187 kb on + strand, within AO353_19110at 4191.187 kb on + strand, within AO353_19110at 4191.188 kb on - strand, within AO353_19110at 4191.188 kb on - strandat 4191.188 kb on - strandat 4191.188 kb on - strand, within AO353_19110at 4191.188 kb on - strand, within AO353_19110at 4191.188 kb on - strand, within AO353_19110at 4191.188 kb on - strand, within AO353_19110at 4191.201 kb on - strand, within AO353_19110at 4191.240 kb on - strand, within AO353_19110at 4191.240 kb on - strand, within AO353_19110at 4191.240 kb on - strand, within AO353_19110at 4191.240 kb on - strand, within AO353_19110at 4191.290 kb on + strand, within AO353_19110at 4191.290 kb on + strand, within AO353_19110at 4191.290 kb on + strand, within AO353_19110at 4191.290 kb on + strand, within AO353_19110at 4191.290 kb on + strand, within AO353_19110at 4191.290 kb on + strand, within AO353_19110at 4191.291 kb on - strand, within AO353_19110at 4191.291 kb on - strand, within AO353_19110at 4191.291 kb on - strand, within AO353_19110at 4191.291 kb on - strand, within AO353_19110at 4191.291 kb on - strand, within AO353_19110at 4191.291 kb on - strand, within AO353_19110at 4191.291 kb on - strand, within AO353_19110at 4191.509 kb on + strand, within AO353_19110at 4191.509 kb on + strand, within AO353_19110at 4191.509 kb on + strand, within AO353_19110at 4191.509 kb on + strand, within AO353_19110at 4191.645 kb on - strand, within AO353_19110at 4191.747 kb on - strand, within AO353_19110at 4191.775 kb on + strand, within AO353_19110at 4191.875 kb on + strand, within AO353_19110at 4191.875 kb on + strand, within AO353_19110at 4191.875 kb on + strand, within AO353_19110at 4191.875 kb on + strand, within AO353_19110at 4191.875 kb on + strand, within AO353_19110at 4191.875 kb on + strand, within AO353_19110at 4191.905 kb on + strand, within AO353_19110at 4191.908 kb on + strand, within AO353_19110at 4191.908 kb on + strand, within AO353_19110at 4191.908 kb on + strand, within AO353_19110at 4191.908 kb on + strand, within AO353_19110at 4191.908 kb on + strand, within AO353_19110at 4191.908 kb on + strand, within AO353_19110at 4191.908 kb on + strand, within AO353_19110at 4191.909 kb on - strand, within AO353_19110at 4191.909 kb on - strand, within AO353_19110at 4191.909 kb on - strand, within AO353_19110at 4191.909 kb on - strand, within AO353_19110at 4191.909 kb on - strand, within AO353_19110at 4191.909 kb on - strand, within AO353_19110at 4191.909 kb on - strand, within AO353_19110at 4192.230 kb on + strandat 4192.279 kb on + strandat 4192.280 kb on - strandat 4192.280 kb on - strandat 4192.280 kb on - strandat 4192.456 kb on + strand, within AO353_19115at 4192.473 kb on + strand, within AO353_19115at 4192.473 kb on + strand, within AO353_19115at 4192.474 kb on - strand, within AO353_19115at 4192.474 kb on - strand, within AO353_19115at 4192.549 kb on - strand, within AO353_19115at 4192.869 kb on + strand, within AO353_19115at 4192.869 kb on + strand, within AO353_19115at 4192.869 kb on + strand, within AO353_19115at 4192.869 kb on + strand, within AO353_19115at 4192.869 kb on + strand, within AO353_19115at 4192.870 kb on - strand, within AO353_19115at 4192.870 kb on - strand, within AO353_19115at 4192.870 kb on - strand, within AO353_19115at 4192.872 kb on + strand, within AO353_19115at 4192.873 kb on - strand, within AO353_19115at 4192.873 kb on - strand, within AO353_19115at 4192.873 kb on - strand, within AO353_19115at 4192.898 kb on + strand, within AO353_19115at 4192.914 kb on + strand, within AO353_19115at 4192.914 kb on + strand, within AO353_19115at 4192.914 kb on + strand, within AO353_19115at 4192.915 kb on - strand, within AO353_19115at 4192.915 kb on - strand, within AO353_19115at 4192.915 kb on - strand, within AO353_19115at 4192.915 kb on - strand, within AO353_19115at 4193.037 kb on + strand, within AO353_19115at 4193.038 kb on - strand, within AO353_19115at 4193.083 kb on + strand, within AO353_19115at 4193.083 kb on + strand, within AO353_19115at 4193.083 kb on + strand, within AO353_19115at 4193.083 kb on + strand, within AO353_19115at 4193.084 kb on - strand, within AO353_19115at 4193.084 kb on - strand, within AO353_19115at 4193.084 kb on - strand, within AO353_19115at 4193.084 kb on - strand, within AO353_19115at 4193.084 kb on - strand, within AO353_19115at 4193.084 kb on - strand, within AO353_19115at 4193.160 kb on + strand, within AO353_19115

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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4,189,956 + AO353_19100 0.29 -0.8
4,190,145 + AO353_19100 0.50 +1.6
4,190,145 + AO353_19100 0.50 +0.7
4,190,145 + AO353_19100 0.50 +0.2
4,190,145 + AO353_19100 0.50 -0.7
4,190,145 + AO353_19100 0.50 +0.7
4,190,145 + AO353_19100 0.50 -0.6
4,190,145 + AO353_19100 0.50 +0.0
4,190,145 + AO353_19100 0.50 -0.8
4,190,145 + AO353_19100 0.50 +0.5
4,190,146 - AO353_19100 0.50 -2.5
4,190,146 - AO353_19100 0.50 -0.4
4,190,146 - AO353_19100 0.50 +2.9
4,190,146 - AO353_19100 0.50 +1.0
4,190,146 - AO353_19100 0.50 +0.5
4,190,146 - AO353_19100 0.50 -1.2
4,190,146 - AO353_19100 0.50 -0.4
4,190,191 + AO353_19100 0.55 +1.0
4,190,239 + AO353_19100 0.60 +0.3
4,190,239 + AO353_19100 0.60 -0.3
4,190,239 + AO353_19100 0.60 -1.0
4,190,239 + AO353_19100 0.60 +0.1
4,190,239 + AO353_19100 0.60 +0.5
4,190,239 + AO353_19100 0.60 -0.6
4,190,240 - AO353_19100 0.60 -0.3
4,190,240 - AO353_19100 0.60 -1.1
4,190,240 - AO353_19100 0.60 +0.2
4,190,240 - AO353_19100 0.60 +0.2
4,190,240 - AO353_19100 0.60 -1.4
4,190,240 - AO353_19100 0.60 +0.2
4,190,240 - AO353_19100 0.60 +0.5
4,190,240 - AO353_19100 0.60 +1.6
4,190,240 - AO353_19100 0.60 -2.4
4,190,240 - AO353_19100 0.60 -1.0
4,190,240 - AO353_19100 0.60 +1.6
4,190,240 - AO353_19100 0.60 +1.1
4,190,240 - AO353_19100 0.60 -1.9
4,190,545 + +0.6
4,190,575 + -1.4
4,190,575 + +1.2
4,190,576 - -1.3
4,190,576 - +1.6
4,190,583 - -0.8
4,190,608 - -1.7
4,190,634 + +1.3
4,190,634 + +0.3
4,190,634 + +2.0
4,190,634 + +0.4
4,190,634 + -0.0
4,190,634 + -1.1
4,190,635 - +0.8
4,190,671 + -0.1
4,190,671 + +0.3
4,190,671 + +1.9
4,190,672 - -1.6
4,190,672 - -0.2
4,190,881 + +0.9
4,190,905 + -0.8
4,190,906 - +0.7
4,190,906 - -0.5
4,191,107 + AO353_19110 0.14 -1.3
4,191,107 + AO353_19110 0.14 -0.8
4,191,107 + AO353_19110 0.14 -2.7
4,191,108 - AO353_19110 0.14 -0.8
4,191,108 - AO353_19110 0.14 -1.0
4,191,137 + AO353_19110 0.17 +1.3
4,191,137 + AO353_19110 0.17 +0.5
4,191,137 + AO353_19110 0.17 +0.2
4,191,138 - AO353_19110 0.17 +0.5
4,191,138 - AO353_19110 0.17 -0.8
4,191,187 + AO353_19110 0.21 -0.3
4,191,187 + AO353_19110 0.21 -1.1
4,191,187 + AO353_19110 0.21 -2.1
4,191,187 + AO353_19110 0.21 -2.5
4,191,188 - AO353_19110 0.21 -0.0
4,191,188 - +2.2
4,191,188 - +1.7
4,191,188 - AO353_19110 0.21 +1.5
4,191,188 - AO353_19110 0.21 +2.1
4,191,188 - AO353_19110 0.21 -1.8
4,191,188 - AO353_19110 0.21 -0.6
4,191,201 - AO353_19110 0.22 -1.7
4,191,240 - AO353_19110 0.25 +0.2
4,191,240 - AO353_19110 0.25 -0.4
4,191,240 - AO353_19110 0.25 -0.6
4,191,240 - AO353_19110 0.25 -2.0
4,191,290 + AO353_19110 0.29 -0.6
4,191,290 + AO353_19110 0.29 +1.3
4,191,290 + AO353_19110 0.29 +1.4
4,191,290 + AO353_19110 0.29 +0.2
4,191,290 + AO353_19110 0.29 -1.1
4,191,290 + AO353_19110 0.29 -0.0
4,191,291 - AO353_19110 0.29 -0.7
4,191,291 - AO353_19110 0.29 +1.2
4,191,291 - AO353_19110 0.29 -0.3
4,191,291 - AO353_19110 0.29 -1.4
4,191,291 - AO353_19110 0.29 +0.4
4,191,291 - AO353_19110 0.29 -0.3
4,191,291 - AO353_19110 0.29 +2.0
4,191,509 + AO353_19110 0.47 +0.4
4,191,509 + AO353_19110 0.47 +1.2
4,191,509 + AO353_19110 0.47 -0.3
4,191,509 + AO353_19110 0.47 -0.7
4,191,645 - AO353_19110 0.58 -0.4
4,191,747 - AO353_19110 0.66 +0.5
4,191,775 + AO353_19110 0.68 +0.6
4,191,875 + AO353_19110 0.77 +0.2
4,191,875 + AO353_19110 0.77 -0.4
4,191,875 + AO353_19110 0.77 -1.7
4,191,875 + AO353_19110 0.77 +2.3
4,191,875 + AO353_19110 0.77 -0.4
4,191,875 + AO353_19110 0.77 -2.1
4,191,905 + AO353_19110 0.79 +2.1
4,191,908 + AO353_19110 0.79 -0.0
4,191,908 + AO353_19110 0.79 +2.1
4,191,908 + AO353_19110 0.79 +0.8
4,191,908 + AO353_19110 0.79 -0.5
4,191,908 + AO353_19110 0.79 +1.0
4,191,908 + AO353_19110 0.79 -0.5
4,191,908 + AO353_19110 0.79 -1.0
4,191,909 - AO353_19110 0.79 -2.0
4,191,909 - AO353_19110 0.79 +0.2
4,191,909 - AO353_19110 0.79 +0.2
4,191,909 - AO353_19110 0.79 -2.3
4,191,909 - AO353_19110 0.79 -0.6
4,191,909 - AO353_19110 0.79 -1.9
4,191,909 - AO353_19110 0.79 +0.6
4,192,230 + -1.4
4,192,279 + -0.1
4,192,280 - -1.3
4,192,280 - -0.8
4,192,280 - -1.3
4,192,456 + AO353_19115 0.13 +0.5
4,192,473 + AO353_19115 0.14 +0.3
4,192,473 + AO353_19115 0.14 +0.4
4,192,474 - AO353_19115 0.14 -1.5
4,192,474 - AO353_19115 0.14 +1.6
4,192,549 - AO353_19115 0.20 +0.4
4,192,869 + AO353_19115 0.43 +3.5
4,192,869 + AO353_19115 0.43 +0.1
4,192,869 + AO353_19115 0.43 +1.2
4,192,869 + AO353_19115 0.43 -1.4
4,192,869 + AO353_19115 0.43 +0.9
4,192,870 - AO353_19115 0.43 -1.8
4,192,870 - AO353_19115 0.43 +0.6
4,192,870 - AO353_19115 0.43 -2.3
4,192,872 + AO353_19115 0.44 -1.1
4,192,873 - AO353_19115 0.44 -0.4
4,192,873 - AO353_19115 0.44 -1.3
4,192,873 - AO353_19115 0.44 +0.9
4,192,898 + AO353_19115 0.45 -1.0
4,192,914 + AO353_19115 0.47 +0.6
4,192,914 + AO353_19115 0.47 +0.1
4,192,914 + AO353_19115 0.47 -1.3
4,192,915 - AO353_19115 0.47 +1.1
4,192,915 - AO353_19115 0.47 -1.4
4,192,915 - AO353_19115 0.47 -0.4
4,192,915 - AO353_19115 0.47 -0.8
4,193,037 + AO353_19115 0.56 +1.0
4,193,038 - AO353_19115 0.56 -2.1
4,193,083 + AO353_19115 0.59 +0.3
4,193,083 + AO353_19115 0.59 +1.6
4,193,083 + AO353_19115 0.59 +0.7
4,193,083 + AO353_19115 0.59 +1.1
4,193,084 - AO353_19115 0.59 -0.6
4,193,084 - AO353_19115 0.59 -0.3
4,193,084 - AO353_19115 0.59 +0.5
4,193,084 - AO353_19115 0.59 -1.1
4,193,084 - AO353_19115 0.59 -1.5
4,193,084 - AO353_19115 0.59 +1.3
4,193,160 + AO353_19115 0.65 +1.1

Or see this region's nucleotide sequence