Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08730

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08725 and AO353_08730 are separated by 103 nucleotidesAO353_08730 and AO353_08735 are separated by 51 nucleotides AO353_08725: AO353_08725 - aminotransferase DegT, at 1,918,714 to 1,919,853 _08725 AO353_08730: AO353_08730 - glycine cleavage system protein H, at 1,919,957 to 1,920,340 _08730 AO353_08735: AO353_08735 - glycine cleavage system protein T, at 1,920,392 to 1,921,474 _08735 Position (kb) 1919 1920 1921Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1919.140 kb on + strand, within AO353_08725at 1919.300 kb on + strand, within AO353_08725at 1919.300 kb on + strand, within AO353_08725at 1919.338 kb on + strand, within AO353_08725at 1919.338 kb on + strand, within AO353_08725at 1919.338 kb on + strand, within AO353_08725at 1919.339 kb on - strand, within AO353_08725at 1919.339 kb on - strand, within AO353_08725at 1919.339 kb on - strand, within AO353_08725at 1919.497 kb on + strand, within AO353_08725at 1919.497 kb on + strand, within AO353_08725at 1919.497 kb on + strand, within AO353_08725at 1919.497 kb on + strand, within AO353_08725at 1919.497 kb on + strand, within AO353_08725at 1919.497 kb on + strand, within AO353_08725at 1919.497 kb on + strand, within AO353_08725at 1919.497 kb on + strand, within AO353_08725at 1919.498 kb on - strand, within AO353_08725at 1919.498 kb on - strand, within AO353_08725at 1919.498 kb on - strand, within AO353_08725at 1919.498 kb on - strand, within AO353_08725at 1919.533 kb on + strand, within AO353_08725at 1919.533 kb on + strand, within AO353_08725at 1919.533 kb on + strand, within AO353_08725at 1919.533 kb on + strand, within AO353_08725at 1919.533 kb on + strand, within AO353_08725at 1919.533 kb on + strand, within AO353_08725at 1919.534 kb on - strand, within AO353_08725at 1919.534 kb on - strand, within AO353_08725at 1919.534 kb on - strand, within AO353_08725at 1919.534 kb on - strand, within AO353_08725at 1919.534 kb on - strand, within AO353_08725at 1919.534 kb on - strand, within AO353_08725at 1919.534 kb on - strand, within AO353_08725at 1919.594 kb on + strand, within AO353_08725at 1919.594 kb on + strand, within AO353_08725at 1919.707 kb on + strand, within AO353_08725at 1919.840 kb on + strandat 1919.840 kb on + strandat 1919.840 kb on + strandat 1919.840 kb on + strandat 1919.841 kb on - strandat 1919.841 kb on - strandat 1919.841 kb on - strandat 1919.841 kb on - strandat 1919.841 kb on - strandat 1919.868 kb on + strandat 1919.868 kb on + strandat 1919.868 kb on + strandat 1919.869 kb on - strandat 1919.959 kb on - strandat 1919.979 kb on + strandat 1919.980 kb on - strandat 1919.980 kb on - strandat 1920.017 kb on - strand, within AO353_08730at 1920.051 kb on + strand, within AO353_08730at 1920.051 kb on + strand, within AO353_08730at 1920.051 kb on + strand, within AO353_08730at 1920.051 kb on + strand, within AO353_08730at 1920.052 kb on - strand, within AO353_08730at 1920.112 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.129 kb on + strand, within AO353_08730at 1920.130 kb on - strand, within AO353_08730at 1920.130 kb on - strand, within AO353_08730at 1920.130 kb on - strand, within AO353_08730at 1920.130 kb on - strand, within AO353_08730at 1920.130 kb on - strand, within AO353_08730at 1920.130 kb on - strand, within AO353_08730at 1920.130 kb on - strand, within AO353_08730at 1920.130 kb on - strand, within AO353_08730at 1920.130 kb on - strand, within AO353_08730at 1920.130 kb on - strand, within AO353_08730at 1920.130 kb on - strand, within AO353_08730at 1920.134 kb on - strand, within AO353_08730at 1920.134 kb on - strand, within AO353_08730at 1920.161 kb on + strand, within AO353_08730at 1920.162 kb on - strand, within AO353_08730at 1920.256 kb on + strand, within AO353_08730at 1920.323 kb on + strandat 1920.324 kb on - strandat 1920.393 kb on + strandat 1920.393 kb on + strandat 1920.394 kb on - strandat 1920.523 kb on + strand, within AO353_08735at 1920.523 kb on + strand, within AO353_08735at 1920.523 kb on + strand, within AO353_08735at 1920.524 kb on - strand, within AO353_08735at 1920.524 kb on - strand, within AO353_08735at 1920.529 kb on + strand, within AO353_08735at 1920.529 kb on + strand, within AO353_08735at 1920.529 kb on + strand, within AO353_08735at 1920.529 kb on + strand, within AO353_08735at 1920.529 kb on + strand, within AO353_08735at 1920.529 kb on + strand, within AO353_08735at 1920.529 kb on + strand, within AO353_08735at 1920.530 kb on - strand, within AO353_08735at 1920.530 kb on - strand, within AO353_08735at 1920.530 kb on - strand, within AO353_08735at 1920.530 kb on - strand, within AO353_08735at 1920.530 kb on - strand, within AO353_08735at 1920.530 kb on - strand, within AO353_08735at 1920.530 kb on - strand, within AO353_08735at 1920.530 kb on - strand, within AO353_08735at 1920.530 kb on - strand, within AO353_08735at 1920.541 kb on + strand, within AO353_08735at 1920.541 kb on + strandat 1920.541 kb on + strand, within AO353_08735at 1920.541 kb on + strand, within AO353_08735at 1920.541 kb on + strand, within AO353_08735at 1920.541 kb on + strand, within AO353_08735at 1920.541 kb on + strand, within AO353_08735at 1920.542 kb on - strand, within AO353_08735at 1920.542 kb on - strand, within AO353_08735at 1920.542 kb on - strand, within AO353_08735at 1920.542 kb on - strand, within AO353_08735at 1920.542 kb on - strand, within AO353_08735at 1920.542 kb on - strand, within AO353_08735at 1920.542 kb on - strand, within AO353_08735at 1920.599 kb on + strand, within AO353_08735at 1920.599 kb on + strand, within AO353_08735at 1920.599 kb on + strand, within AO353_08735at 1920.599 kb on + strand, within AO353_08735at 1920.599 kb on + strand, within AO353_08735at 1920.599 kb on + strand, within AO353_08735at 1920.599 kb on + strand, within AO353_08735at 1920.600 kb on - strand, within AO353_08735at 1920.600 kb on - strand, within AO353_08735at 1920.600 kb on - strand, within AO353_08735at 1920.600 kb on - strand, within AO353_08735at 1920.600 kb on - strand, within AO353_08735at 1920.600 kb on - strand, within AO353_08735at 1920.600 kb on - strand, within AO353_08735at 1920.727 kb on + strand, within AO353_08735at 1920.727 kb on + strand, within AO353_08735at 1920.760 kb on + strand, within AO353_08735at 1920.771 kb on + strand, within AO353_08735at 1920.771 kb on + strand, within AO353_08735at 1920.771 kb on + strand, within AO353_08735at 1920.771 kb on + strand, within AO353_08735at 1920.771 kb on + strand, within AO353_08735at 1920.771 kb on + strand, within AO353_08735at 1920.772 kb on - strand, within AO353_08735at 1920.772 kb on - strand, within AO353_08735at 1920.772 kb on - strand, within AO353_08735at 1920.772 kb on - strand, within AO353_08735at 1920.772 kb on - strand, within AO353_08735at 1920.830 kb on + strand, within AO353_08735at 1920.912 kb on + strand, within AO353_08735at 1921.083 kb on + strand, within AO353_08735at 1921.083 kb on + strand, within AO353_08735at 1921.083 kb on + strand, within AO353_08735at 1921.084 kb on - strand, within AO353_08735at 1921.084 kb on - strand, within AO353_08735at 1921.084 kb on - strand, within AO353_08735at 1921.084 kb on - strand, within AO353_08735at 1921.153 kb on - strand, within AO353_08735at 1921.221 kb on + strand, within AO353_08735at 1921.221 kb on + strand, within AO353_08735at 1921.221 kb on + strand, within AO353_08735at 1921.221 kb on + strand, within AO353_08735at 1921.221 kb on + strand, within AO353_08735at 1921.221 kb on + strand, within AO353_08735at 1921.221 kb on + strand, within AO353_08735at 1921.222 kb on - strand, within AO353_08735at 1921.222 kb on - strand, within AO353_08735at 1921.222 kb on - strand, within AO353_08735at 1921.222 kb on - strand, within AO353_08735at 1921.222 kb on - strand, within AO353_08735at 1921.222 kb on - strand, within AO353_08735at 1921.321 kb on + strand, within AO353_08735at 1921.321 kb on + strand, within AO353_08735

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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1,919,140 + AO353_08725 0.37 -1.1
1,919,300 + AO353_08725 0.51 +2.0
1,919,300 + AO353_08725 0.51 -0.5
1,919,338 + AO353_08725 0.55 -0.5
1,919,338 + AO353_08725 0.55 -1.8
1,919,338 + AO353_08725 0.55 +2.1
1,919,339 - AO353_08725 0.55 +0.5
1,919,339 - AO353_08725 0.55 -2.3
1,919,339 - AO353_08725 0.55 +1.4
1,919,497 + AO353_08725 0.69 +0.5
1,919,497 + AO353_08725 0.69 -1.4
1,919,497 + AO353_08725 0.69 +0.2
1,919,497 + AO353_08725 0.69 -0.8
1,919,497 + AO353_08725 0.69 -0.2
1,919,497 + AO353_08725 0.69 -1.1
1,919,497 + AO353_08725 0.69 -0.4
1,919,497 + AO353_08725 0.69 -2.3
1,919,498 - AO353_08725 0.69 -0.8
1,919,498 - AO353_08725 0.69 +0.5
1,919,498 - AO353_08725 0.69 +0.3
1,919,498 - AO353_08725 0.69 -0.8
1,919,533 + AO353_08725 0.72 +0.3
1,919,533 + AO353_08725 0.72 +0.4
1,919,533 + AO353_08725 0.72 +1.7
1,919,533 + AO353_08725 0.72 -1.0
1,919,533 + AO353_08725 0.72 -2.5
1,919,533 + AO353_08725 0.72 +1.5
1,919,534 - AO353_08725 0.72 +0.3
1,919,534 - AO353_08725 0.72 -0.0
1,919,534 - AO353_08725 0.72 +0.0
1,919,534 - AO353_08725 0.72 -0.2
1,919,534 - AO353_08725 0.72 -1.3
1,919,534 - AO353_08725 0.72 -0.4
1,919,534 - AO353_08725 0.72 +1.6
1,919,594 + AO353_08725 0.77 -0.2
1,919,594 + AO353_08725 0.77 -0.6
1,919,707 + AO353_08725 0.87 -1.6
1,919,840 + -0.1
1,919,840 + +1.3
1,919,840 + -0.1
1,919,840 + -1.8
1,919,841 - +0.8
1,919,841 - +0.5
1,919,841 - -1.0
1,919,841 - +1.6
1,919,841 - +0.3
1,919,868 + +1.1
1,919,868 + -2.6
1,919,868 + -0.8
1,919,869 - +1.2
1,919,959 - +0.2
1,919,979 + -2.0
1,919,980 - +0.3
1,919,980 - +1.0
1,920,017 - AO353_08730 0.16 +0.8
1,920,051 + AO353_08730 0.24 +0.1
1,920,051 + AO353_08730 0.24 +1.7
1,920,051 + AO353_08730 0.24 -1.2
1,920,051 + AO353_08730 0.24 -2.4
1,920,052 - AO353_08730 0.25 +2.1
1,920,112 + AO353_08730 0.40 -0.1
1,920,129 + AO353_08730 0.45 +1.3
1,920,129 + AO353_08730 0.45 +0.5
1,920,129 + AO353_08730 0.45 +0.5
1,920,129 + AO353_08730 0.45 +0.3
1,920,129 + AO353_08730 0.45 +2.4
1,920,129 + AO353_08730 0.45 -1.5
1,920,129 + AO353_08730 0.45 +2.5
1,920,129 + AO353_08730 0.45 +0.2
1,920,129 + AO353_08730 0.45 -1.1
1,920,129 + AO353_08730 0.45 +0.1
1,920,129 + AO353_08730 0.45 +1.4
1,920,129 + AO353_08730 0.45 -0.8
1,920,129 + AO353_08730 0.45 +0.8
1,920,129 + AO353_08730 0.45 +1.5
1,920,129 + AO353_08730 0.45 +2.4
1,920,129 + AO353_08730 0.45 -2.4
1,920,129 + AO353_08730 0.45 -0.8
1,920,129 + AO353_08730 0.45 +1.1
1,920,129 + AO353_08730 0.45 +1.2
1,920,129 + AO353_08730 0.45 -0.2
1,920,130 - AO353_08730 0.45 -2.0
1,920,130 - AO353_08730 0.45 -1.1
1,920,130 - AO353_08730 0.45 +0.9
1,920,130 - AO353_08730 0.45 -0.3
1,920,130 - AO353_08730 0.45 +2.5
1,920,130 - AO353_08730 0.45 -1.1
1,920,130 - AO353_08730 0.45 +1.0
1,920,130 - AO353_08730 0.45 +2.3
1,920,130 - AO353_08730 0.45 -1.2
1,920,130 - AO353_08730 0.45 +1.0
1,920,130 - AO353_08730 0.45 -0.6
1,920,134 - AO353_08730 0.46 +0.2
1,920,134 - AO353_08730 0.46 +2.4
1,920,161 + AO353_08730 0.53 -2.1
1,920,162 - AO353_08730 0.53 +0.6
1,920,256 + AO353_08730 0.78 +0.4
1,920,323 + -2.0
1,920,324 - -1.4
1,920,393 + -0.8
1,920,393 + -0.4
1,920,394 - +1.2
1,920,523 + AO353_08735 0.12 +0.8
1,920,523 + AO353_08735 0.12 -0.8
1,920,523 + AO353_08735 0.12 +1.6
1,920,524 - AO353_08735 0.12 +0.5
1,920,524 - AO353_08735 0.12 -1.1
1,920,529 + AO353_08735 0.13 +3.1
1,920,529 + AO353_08735 0.13 -1.2
1,920,529 + AO353_08735 0.13 +4.1
1,920,529 + AO353_08735 0.13 -0.7
1,920,529 + AO353_08735 0.13 +0.0
1,920,529 + AO353_08735 0.13 -0.5
1,920,529 + AO353_08735 0.13 -0.2
1,920,530 - AO353_08735 0.13 -0.2
1,920,530 - AO353_08735 0.13 -2.0
1,920,530 - AO353_08735 0.13 +0.4
1,920,530 - AO353_08735 0.13 +1.6
1,920,530 - AO353_08735 0.13 -0.5
1,920,530 - AO353_08735 0.13 -0.4
1,920,530 - AO353_08735 0.13 +3.3
1,920,530 - AO353_08735 0.13 +1.4
1,920,530 - AO353_08735 0.13 -2.0
1,920,541 + AO353_08735 0.14 +0.9
1,920,541 + +0.8
1,920,541 + AO353_08735 0.14 -0.2
1,920,541 + AO353_08735 0.14 -1.7
1,920,541 + AO353_08735 0.14 -1.3
1,920,541 + AO353_08735 0.14 -0.4
1,920,541 + AO353_08735 0.14 +0.7
1,920,542 - AO353_08735 0.14 +1.1
1,920,542 - AO353_08735 0.14 -1.3
1,920,542 - AO353_08735 0.14 -1.6
1,920,542 - AO353_08735 0.14 -0.8
1,920,542 - AO353_08735 0.14 -0.5
1,920,542 - AO353_08735 0.14 +1.7
1,920,542 - AO353_08735 0.14 +0.8
1,920,599 + AO353_08735 0.19 +1.5
1,920,599 + AO353_08735 0.19 -0.1
1,920,599 + AO353_08735 0.19 -0.1
1,920,599 + AO353_08735 0.19 -0.8
1,920,599 + AO353_08735 0.19 -0.8
1,920,599 + AO353_08735 0.19 -1.7
1,920,599 + AO353_08735 0.19 +0.2
1,920,600 - AO353_08735 0.19 +0.6
1,920,600 - AO353_08735 0.19 -0.7
1,920,600 - AO353_08735 0.19 -1.2
1,920,600 - AO353_08735 0.19 -1.0
1,920,600 - AO353_08735 0.19 -0.5
1,920,600 - AO353_08735 0.19 -0.8
1,920,600 - AO353_08735 0.19 -0.6
1,920,727 + AO353_08735 0.31 -0.4
1,920,727 + AO353_08735 0.31 -1.5
1,920,760 + AO353_08735 0.34 -1.0
1,920,771 + AO353_08735 0.35 -0.5
1,920,771 + AO353_08735 0.35 -1.0
1,920,771 + AO353_08735 0.35 -0.6
1,920,771 + AO353_08735 0.35 -0.2
1,920,771 + AO353_08735 0.35 -2.2
1,920,771 + AO353_08735 0.35 -1.4
1,920,772 - AO353_08735 0.35 +0.2
1,920,772 - AO353_08735 0.35 -0.9
1,920,772 - AO353_08735 0.35 +2.1
1,920,772 - AO353_08735 0.35 +2.8
1,920,772 - AO353_08735 0.35 +1.0
1,920,830 + AO353_08735 0.40 +0.1
1,920,912 + AO353_08735 0.48 -0.1
1,921,083 + AO353_08735 0.64 -0.4
1,921,083 + AO353_08735 0.64 -0.3
1,921,083 + AO353_08735 0.64 +1.1
1,921,084 - AO353_08735 0.64 -0.5
1,921,084 - AO353_08735 0.64 -1.1
1,921,084 - AO353_08735 0.64 -0.2
1,921,084 - AO353_08735 0.64 +1.5
1,921,153 - AO353_08735 0.70 -1.2
1,921,221 + AO353_08735 0.77 -2.0
1,921,221 + AO353_08735 0.77 +0.8
1,921,221 + AO353_08735 0.77 -1.2
1,921,221 + AO353_08735 0.77 -0.6
1,921,221 + AO353_08735 0.77 +2.1
1,921,221 + AO353_08735 0.77 +0.5
1,921,221 + AO353_08735 0.77 -0.9
1,921,222 - AO353_08735 0.77 +1.2
1,921,222 - AO353_08735 0.77 -0.7
1,921,222 - AO353_08735 0.77 +0.5
1,921,222 - AO353_08735 0.77 +1.8
1,921,222 - AO353_08735 0.77 +1.3
1,921,222 - AO353_08735 0.77 -0.1
1,921,321 + AO353_08735 0.86 -0.2
1,921,321 + AO353_08735 0.86 +2.1

Or see this region's nucleotide sequence