Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08200

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
1,542,963	-				-0.3
1,543,179	+				-2.2
1,543,196	-				-1.9
1,543,201	+				-1.6
1,543,223	-				+0.5
1,543,223	-				-0.3
1,543,224	+				-1.1
1,543,224	+				-1.3
1,543,224	+				-0.4
1,543,244	-				+0.9
1,543,244	-				+1.0
1,543,245	+				-1.0
1,543,277	+		MMP_RS08195	0.10	-1.4
1,543,331	-		MMP_RS08195	0.20	+0.9
1,543,332	+		MMP_RS08195	0.20	+0.4
1,543,403	-		MMP_RS08195	0.33	+0.3
1,543,403	-		MMP_RS08195	0.33	+0.3
1,543,404	+		MMP_RS08195	0.34	-0.0
1,543,404	+		MMP_RS08195	0.34	-0.2
1,543,404	+		MMP_RS08195	0.34	+0.2
1,543,404	+		MMP_RS08195	0.34	-0.1
1,543,404	+		MMP_RS08195	0.34	+0.2
1,543,404	+		MMP_RS08195	0.34	+0.6
1,543,404	+		MMP_RS08195	0.34	+0.3
1,543,405	-		MMP_RS08195	0.34	+0.2
1,543,405	-		MMP_RS08195	0.34	+1.0
1,543,406	+		MMP_RS08195	0.34	+0.1
1,543,407	-		MMP_RS08195	0.34	+1.0
1,543,407	-		MMP_RS08195	0.34	+0.0
1,543,418	+		MMP_RS08195	0.36	-0.1
1,543,425	-		MMP_RS08195	0.37	+0.0
1,543,515	-		MMP_RS08195	0.54	-0.2
1,543,550	-		MMP_RS08195	0.60	-0.2
1,543,551	+		MMP_RS08195	0.61	+0.2
1,543,595	+		MMP_RS08195	0.69	-0.1
1,543,754	-				-0.0
1,543,947	+				-0.6
1,544,036	-		MMP_RS08200	0.11	-1.2
1,544,178	-		MMP_RS08200	0.20	-0.9
1,544,286	-		MMP_RS08200	0.27	-0.8
1,544,287	+		MMP_RS08200	0.27	-0.7
1,544,317	+		MMP_RS08200	0.29	-0.3
1,544,390	+		MMP_RS08200	0.33	-0.6
1,544,409	-		MMP_RS08200	0.35	-0.4
1,544,409	-		MMP_RS08200	0.35	-0.8
1,544,413	+		MMP_RS08200	0.35	-0.6
1,544,418	-		MMP_RS08200	0.35	-0.8
1,544,465	+		MMP_RS08200	0.38	-0.7
1,544,475	+		MMP_RS08200	0.39	-0.9
1,544,586	-		MMP_RS08200	0.45	-1.0
1,544,606	-		MMP_RS08200	0.47	-0.4
1,544,606	-		MMP_RS08200	0.47	-0.6
1,544,670	-		MMP_RS08200	0.51	-0.8
1,544,676	-		MMP_RS08200	0.51	-0.4
1,544,677	+		MMP_RS08200	0.51	-0.6
1,544,682	-		MMP_RS08200	0.51	-0.4
1,544,682	-		MMP_RS08200	0.51	-0.9
1,544,683	+		MMP_RS08200	0.51	-1.0
1,544,690	+		MMP_RS08200	0.52	-1.0
1,544,690	-		MMP_RS08200	0.52	-1.2
1,544,690	-		MMP_RS08200	0.52	-1.0
1,544,690	-		MMP_RS08200	0.52	-1.0
1,544,691	+		MMP_RS08200	0.52	-0.7
1,544,691	+		MMP_RS08200	0.52	-0.9
1,544,693	+		MMP_RS08200	0.52	-1.1
1,544,693	+		MMP_RS08200	0.52	-0.5
1,544,702	+		MMP_RS08200	0.53	-0.7
1,544,721	+		MMP_RS08200	0.54	-1.4
1,544,723	+		MMP_RS08200	0.54	-0.9
1,544,723	+		MMP_RS08200	0.54	-0.7
1,544,761	+		MMP_RS08200	0.56	-0.2
1,544,766	-		MMP_RS08200	0.57	-0.6
1,544,792	-		MMP_RS08200	0.58	-1.2
1,544,792	-		MMP_RS08200	0.58	-0.8
1,544,792	-		MMP_RS08200	0.58	-0.8
1,544,793	+		MMP_RS08200	0.58	-0.5
1,544,793	+		MMP_RS08200	0.58	-0.3
1,544,793	+		MMP_RS08200	0.58	-1.0
1,544,793	+		MMP_RS08200	0.58	-1.0
1,544,832	-		MMP_RS08200	0.61	-0.8
1,545,098	+		MMP_RS08200	0.77	-0.0
1,545,100	+		MMP_RS08200	0.77	-0.4
1,545,187	+		MMP_RS08200	0.83	-0.4
1,545,448	-				-0.5
1,545,533	+				-0.5
1,545,541	+				-0.6
1,545,541	+				-0.6
1,545,545	-				+0.3
1,545,546	+				-1.0
1,545,546	+				+0.1
1,545,549	+				+0.6
1,545,578	+				+0.3
1,545,584	+				+0.5
1,545,654	+		MMP_RS08205	0.18	+0.4
1,545,663	+		MMP_RS08205	0.20	+0.2
1,545,809	-		MMP_RS08205	0.44	+0.8
1,545,815	+		MMP_RS08205	0.45	+0.4
1,545,842	+		MMP_RS08205	0.50	+0.0
1,545,864	-		MMP_RS08205	0.54	+0.2
1,545,865	+		MMP_RS08205	0.54	-0.0
1,545,865	+		MMP_RS08205	0.54	-0.2
1,545,866	-		MMP_RS08205	0.54	+0.1
1,545,867	+		MMP_RS08205	0.54	+0.0
1,545,867	+		MMP_RS08205	0.54	+0.1
1,545,867	+		MMP_RS08205	0.54	+0.1
1,545,867	+		MMP_RS08205	0.54	+0.3
1,545,867	+		MMP_RS08205	0.54	-0.2
1,545,870	-		MMP_RS08205	0.55	-0.7
1,545,870	-		MMP_RS08205	0.55	+0.2
1,546,025	+		MMP_RS08205	0.81	+0.2
1,546,084	+				+0.2
1,546,258	-		MMP_RS08210	0.21	-1.3
1,546,278	+		MMP_RS08210	0.25	-2.1