Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06705

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
1,286,603	+				-2.2
1,286,725	-		MMP_RS06700	0.20	-4.3
1,286,726	+		MMP_RS06700	0.20	-4.2
1,286,726	+		MMP_RS06700	0.20	-4.3
1,286,831	-		MMP_RS06700	0.40	-3.8
1,286,831	-		MMP_RS06700	0.40	-3.4
1,286,832	+		MMP_RS06700	0.40	-2.9
1,286,833	-		MMP_RS06700	0.40	-3.6
1,286,836	-		MMP_RS06700	0.40	-3.1
1,286,899	-		MMP_RS06700	0.52	-2.7
1,286,901	-		MMP_RS06700	0.53	-3.8
1,286,902	+		MMP_RS06700	0.53	-3.6
1,286,902	+		MMP_RS06700	0.53	-3.1
1,286,923	-		MMP_RS06700	0.57	-3.5
1,286,923	-		MMP_RS06700	0.57	-4.8
1,286,923	-		MMP_RS06700	0.57	-4.2
1,286,923	-		MMP_RS06700	0.57	-4.3
1,286,923	-		MMP_RS06700	0.57	-3.1
1,286,924	+		MMP_RS06700	0.57	-4.2
1,286,993	+		MMP_RS06700	0.70	-4.0
1,286,998	-		MMP_RS06700	0.71	-2.7
1,287,019	-		MMP_RS06700	0.75	-4.2
1,287,022	-		MMP_RS06700	0.75	-4.8
1,287,023	+		MMP_RS06700	0.75	-3.4
1,287,048	+		MMP_RS06700	0.80	-2.7
1,287,048	+		MMP_RS06700	0.80	-2.9
1,287,146	+				-3.0
1,287,156	-				-3.2
1,287,236	-				-2.2
1,287,425	+		MMP_RS06705	0.28	-1.9
1,287,446	-		MMP_RS06705	0.31	-3.6
1,287,447	+		MMP_RS06705	0.31	-4.9
1,287,529	+		MMP_RS06705	0.41	-2.5
1,287,645	-		MMP_RS06705	0.55	-1.7
1,287,751	-		MMP_RS06705	0.68	-1.8
1,287,829	-		MMP_RS06705	0.77	-2.2
1,287,904	+		MMP_RS06705	0.86	-1.2
1,287,904	+		MMP_RS06705	0.86	-1.7
1,288,019	+				-2.5
1,288,022	+				-1.8
1,288,067	+				-0.6
1,288,070	-				-1.0
1,288,070	-				-1.6
1,288,071	+				-1.6
1,288,071	+				-3.3
1,288,074	-				-2.8
1,288,075	+				-1.5
1,288,075	+				-2.1
1,288,075	+				-1.8
1,288,077	-				-1.2
1,288,078	+				-1.9
1,288,078	+				-1.0
1,288,079	-				-1.3
1,288,080	+				-1.0
1,288,080	+				-1.0
1,288,080	+				-1.9
1,288,081	-				-1.9
1,288,081	-				-2.0
1,288,082	+				-0.1
1,288,082	+				-1.4
1,288,082	+				-1.5
1,288,082	+				-1.3
1,288,084	-				-0.9
1,288,110	-				+0.6
1,288,121	-				+0.4
1,288,129	-				-0.0
1,288,219	+				+0.5
1,288,441	-		MMP_RS06710	0.74	-0.4
1,288,441	-		MMP_RS06710	0.74	-0.1
1,288,475	-		MMP_RS06710	0.87	-0.2
1,288,475	-		MMP_RS06710	0.87	+0.5
1,288,478	-		MMP_RS06710	0.89	-0.2
1,288,479	+		MMP_RS06710	0.89	+0.3
1,288,482	-				-0.0
1,288,483	+				+0.6
1,288,518	-				-0.6
1,288,520	-				-0.1
1,288,520	-				+0.1
1,288,521	+				-0.7
1,288,521	+				+0.1
1,288,522	-				+0.5
1,288,545	-				+0.3
1,288,568	+				+0.2
1,288,568	+				+0.4
1,288,568	+				+0.7
1,288,568	+				+0.0
1,288,569	-				-0.1
1,288,569	-				-0.3
1,288,569	-				+0.0
1,288,570	+				-0.1
1,288,570	+				-0.3
1,288,570	+				+0.3
1,288,571	-				+0.3
1,288,572	+				+0.1
1,288,572	+				+0.0
1,288,572	+				+0.2
1,288,576	-				+0.3
1,288,577	+				+0.2
1,288,577	+				+0.1
1,288,610	-				+0.2
1,288,653	-				+0.1
1,288,707	+				-0.1
1,288,707	+				-0.4
1,288,708	-				+0.2
1,288,708	-				-0.0
1,288,711	-				+0.2
1,288,712	+				-0.1
1,288,819	-				-2.4
1,288,980	+		MMP_RS06715	0.14	-2.2
1,288,986	+		MMP_RS06715	0.14	-3.4