Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06675 and MMP_RS06680 are separated by 23 nucleotides MMP_RS06680 and MMP_RS06685 are separated by 35 nucleotides
MMP_RS06675: MMP_RS06675 - ADP-specific phosphofructokinase, at 1,281,207 to 1,282,598
_RS06675
MMP_RS06680: MMP_RS06680 - Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain, at 1,282,622 to 1,283,785
_RS06680
MMP_RS06685: MMP_RS06685 - formate dehydrogenase H subunit alpha selenocysteine-containing, at 1,283,821 to 1,285,845
_RS06685
Position (kb)
1282
1283
1284 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1281.949 kb on - strand, within MMP_RS06675 at 1282.241 kb on - strand, within MMP_RS06675 at 1282.242 kb on + strand, within MMP_RS06675 at 1282.256 kb on + strand, within MMP_RS06675 at 1282.256 kb on + strand, within MMP_RS06675 at 1282.261 kb on + strand, within MMP_RS06675 at 1282.261 kb on + strand, within MMP_RS06675 at 1282.261 kb on + strand, within MMP_RS06675 at 1282.337 kb on - strand, within MMP_RS06675 at 1282.396 kb on - strand, within MMP_RS06675 at 1282.403 kb on - strand, within MMP_RS06675 at 1282.407 kb on + strand, within MMP_RS06675 at 1282.424 kb on + strand, within MMP_RS06675 at 1282.535 kb on - strand at 1282.558 kb on - strand at 1282.563 kb on - strand at 1282.600 kb on - strand at 1282.747 kb on - strand, within MMP_RS06680 at 1282.754 kb on - strand, within MMP_RS06680 at 1282.754 kb on - strand, within MMP_RS06680 at 1282.867 kb on - strand, within MMP_RS06680 at 1282.901 kb on - strand, within MMP_RS06680 at 1282.901 kb on - strand, within MMP_RS06680 at 1282.901 kb on - strand, within MMP_RS06680 at 1282.901 kb on - strand, within MMP_RS06680 at 1282.902 kb on + strand, within MMP_RS06680 at 1282.928 kb on + strand, within MMP_RS06680 at 1283.339 kb on - strand, within MMP_RS06680 at 1283.364 kb on - strand, within MMP_RS06680 at 1283.432 kb on + strand, within MMP_RS06680 at 1283.432 kb on + strand, within MMP_RS06680 at 1283.432 kb on + strand, within MMP_RS06680 at 1283.433 kb on - strand, within MMP_RS06680 at 1283.435 kb on - strand, within MMP_RS06680 at 1283.435 kb on - strand, within MMP_RS06680 at 1283.435 kb on - strand, within MMP_RS06680 at 1283.435 kb on - strand, within MMP_RS06680 at 1283.436 kb on + strand, within MMP_RS06680 at 1283.436 kb on + strand, within MMP_RS06680 at 1283.528 kb on - strand, within MMP_RS06680 at 1283.742 kb on + strand at 1283.788 kb on - strand at 1283.977 kb on - strand at 1284.238 kb on - strand, within MMP_RS06685 at 1284.559 kb on - strand, within MMP_RS06685 at 1284.638 kb on + strand, within MMP_RS06685 at 1284.686 kb on - strand, within MMP_RS06685 at 1284.762 kb on - strand, within MMP_RS06685 at 1284.763 kb on + strand, within MMP_RS06685
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 1,281,949 - MMP_RS06675 0.53 -0.1 1,282,241 - MMP_RS06675 0.74 +0.1 1,282,242 + MMP_RS06675 0.74 -0.3 1,282,256 + MMP_RS06675 0.75 +0.1 1,282,256 + MMP_RS06675 0.75 +0.2 1,282,261 + MMP_RS06675 0.76 +0.0 1,282,261 + MMP_RS06675 0.76 -0.3 1,282,261 + MMP_RS06675 0.76 -0.2 1,282,337 - MMP_RS06675 0.81 +0.2 1,282,396 - MMP_RS06675 0.85 +0.2 1,282,403 - MMP_RS06675 0.86 +0.0 1,282,407 + MMP_RS06675 0.86 +0.0 1,282,424 + MMP_RS06675 0.87 +0.2 1,282,535 - +0.2 1,282,558 - -0.6 1,282,563 - -0.1 1,282,600 - -0.2 1,282,747 - MMP_RS06680 0.11 -3.3 1,282,754 - MMP_RS06680 0.11 -3.3 1,282,754 - MMP_RS06680 0.11 -2.4 1,282,867 - MMP_RS06680 0.21 -3.3 1,282,901 - MMP_RS06680 0.24 -3.0 1,282,901 - MMP_RS06680 0.24 -3.4 1,282,901 - MMP_RS06680 0.24 -2.8 1,282,901 - MMP_RS06680 0.24 -3.9 1,282,902 + MMP_RS06680 0.24 -2.6 1,282,928 + MMP_RS06680 0.26 -3.4 1,283,339 - MMP_RS06680 0.62 -3.4 1,283,364 - MMP_RS06680 0.64 -3.4 1,283,432 + MMP_RS06680 0.70 -3.0 1,283,432 + MMP_RS06680 0.70 -4.1 1,283,432 + MMP_RS06680 0.70 -2.9 1,283,433 - MMP_RS06680 0.70 -3.2 1,283,435 - MMP_RS06680 0.70 -3.3 1,283,435 - MMP_RS06680 0.70 -2.2 1,283,435 - MMP_RS06680 0.70 -3.1 1,283,435 - MMP_RS06680 0.70 -3.6 1,283,436 + MMP_RS06680 0.70 -3.4 1,283,436 + MMP_RS06680 0.70 -3.5 1,283,528 - MMP_RS06680 0.78 -3.4 1,283,742 + -3.5 1,283,788 - -3.3 1,283,977 - -3.4 1,284,238 - MMP_RS06685 0.21 -4.6 1,284,559 - MMP_RS06685 0.36 -2.0 1,284,638 + MMP_RS06685 0.40 -3.3 1,284,686 - MMP_RS06685 0.43 -2.6 1,284,762 - MMP_RS06685 0.46 -2.3 1,284,763 + MMP_RS06685 0.47 -2.3
Or see this region's nucleotide sequence