Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06095 and MMP_RS06100 are separated by 0 nucleotides MMP_RS06100 and MMP_RS06105 are separated by 127 nucleotides MMP_RS06105 and MMP_RS06110 are separated by 12 nucleotides
MMP_RS06095: MMP_RS06095 - ABC transporter ATP-binding protein, at 1,166,627 to 1,167,388
_RS06095
MMP_RS06100: MMP_RS06100 - GNAT family N-acetyltransferase, at 1,167,389 to 1,167,907
_RS06100
MMP_RS06105: MMP_RS06105 - hydrogenase maturation peptidase HycI, at 1,168,035 to 1,168,574
_RS06105
MMP_RS06110: MMP_RS06110 - ATP-dependent protease LonB, at 1,168,587 to 1,170,665
_RS06110
Position (kb)
1168
1169 Strain fitness (log2 ratio)
-1
0
1 at 1167.057 kb on - strand, within MMP_RS06095 at 1167.062 kb on + strand, within MMP_RS06095 at 1167.156 kb on - strand, within MMP_RS06095 at 1167.157 kb on + strand, within MMP_RS06095 at 1167.213 kb on - strand, within MMP_RS06095 at 1167.227 kb on + strand, within MMP_RS06095 at 1167.230 kb on - strand, within MMP_RS06095 at 1167.230 kb on - strand, within MMP_RS06095 at 1167.318 kb on - strand at 1167.331 kb on - strand at 1167.336 kb on + strand at 1167.339 kb on - strand at 1167.339 kb on - strand at 1167.387 kb on + strand at 1167.396 kb on - strand at 1167.408 kb on + strand at 1167.454 kb on - strand, within MMP_RS06100 at 1167.490 kb on - strand, within MMP_RS06100 at 1167.491 kb on + strand, within MMP_RS06100 at 1167.529 kb on - strand, within MMP_RS06100 at 1167.566 kb on - strand, within MMP_RS06100 at 1167.635 kb on + strand, within MMP_RS06100 at 1167.635 kb on + strand, within MMP_RS06100 at 1167.635 kb on + strand, within MMP_RS06100 at 1167.636 kb on - strand, within MMP_RS06100 at 1167.637 kb on + strand, within MMP_RS06100 at 1167.638 kb on - strand, within MMP_RS06100 at 1167.639 kb on + strand, within MMP_RS06100 at 1167.653 kb on + strand, within MMP_RS06100 at 1167.707 kb on + strand, within MMP_RS06100 at 1167.740 kb on + strand, within MMP_RS06100 at 1167.741 kb on - strand, within MMP_RS06100 at 1167.742 kb on + strand, within MMP_RS06100 at 1167.833 kb on + strand, within MMP_RS06100 at 1167.841 kb on - strand, within MMP_RS06100 at 1167.842 kb on + strand, within MMP_RS06100 at 1167.852 kb on - strand, within MMP_RS06100 at 1167.857 kb on - strand at 1167.857 kb on - strand at 1167.857 kb on - strand at 1167.889 kb on - strand at 1167.929 kb on + strand at 1167.961 kb on + strand at 1167.962 kb on - strand at 1167.964 kb on - strand at 1167.964 kb on - strand at 1167.964 kb on - strand at 1167.965 kb on + strand at 1167.965 kb on + strand at 1167.966 kb on - strand at 1167.966 kb on - strand at 1167.966 kb on - strand at 1167.967 kb on + strand at 1167.974 kb on - strand at 1167.975 kb on + strand at 1167.986 kb on - strand at 1167.989 kb on - strand at 1167.989 kb on - strand at 1167.990 kb on + strand at 1167.990 kb on + strand at 1167.991 kb on - strand at 1167.991 kb on - strand at 1167.994 kb on + strand at 1167.994 kb on + strand at 1167.996 kb on + strand at 1167.996 kb on + strand at 1167.996 kb on + strand at 1167.996 kb on + strand at 1167.996 kb on + strand at 1168.053 kb on + strand at 1168.059 kb on + strand at 1168.067 kb on - strand at 1168.097 kb on + strand, within MMP_RS06105 at 1168.097 kb on + strand, within MMP_RS06105 at 1168.097 kb on + strand, within MMP_RS06105 at 1168.101 kb on + strand, within MMP_RS06105 at 1168.141 kb on + strand, within MMP_RS06105 at 1168.216 kb on - strand, within MMP_RS06105 at 1168.220 kb on - strand, within MMP_RS06105 at 1168.228 kb on - strand, within MMP_RS06105 at 1168.249 kb on - strand, within MMP_RS06105 at 1168.250 kb on + strand, within MMP_RS06105 at 1168.322 kb on + strand, within MMP_RS06105 at 1168.412 kb on + strand, within MMP_RS06105 at 1168.415 kb on + strand, within MMP_RS06105 at 1168.419 kb on + strand, within MMP_RS06105 at 1168.422 kb on - strand, within MMP_RS06105 at 1168.454 kb on + strand, within MMP_RS06105 at 1168.458 kb on + strand, within MMP_RS06105 at 1168.465 kb on - strand, within MMP_RS06105 at 1168.586 kb on - strand at 1168.803 kb on - strand, within MMP_RS06110 at 1168.849 kb on - strand, within MMP_RS06110 at 1169.141 kb on + strand, within MMP_RS06110 at 1169.362 kb on - strand, within MMP_RS06110
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 1,167,057 - MMP_RS06095 0.56 -0.5 1,167,062 + MMP_RS06095 0.57 +0.3 1,167,156 - MMP_RS06095 0.69 -0.3 1,167,157 + MMP_RS06095 0.70 +0.1 1,167,213 - MMP_RS06095 0.77 +0.1 1,167,227 + MMP_RS06095 0.79 +0.1 1,167,230 - MMP_RS06095 0.79 +0.6 1,167,230 - MMP_RS06095 0.79 +0.0 1,167,318 - -0.3 1,167,331 - -0.2 1,167,336 + -0.0 1,167,339 - +0.6 1,167,339 - -0.0 1,167,387 + -0.0 1,167,396 - +0.1 1,167,408 + +0.2 1,167,454 - MMP_RS06100 0.13 +1.1 1,167,490 - MMP_RS06100 0.19 +0.1 1,167,491 + MMP_RS06100 0.20 -0.0 1,167,529 - MMP_RS06100 0.27 -0.9 1,167,566 - MMP_RS06100 0.34 +0.1 1,167,635 + MMP_RS06100 0.47 -0.3 1,167,635 + MMP_RS06100 0.47 +1.3 1,167,635 + MMP_RS06100 0.47 +0.2 1,167,636 - MMP_RS06100 0.48 +0.0 1,167,637 + MMP_RS06100 0.48 -0.1 1,167,638 - MMP_RS06100 0.48 +0.5 1,167,639 + MMP_RS06100 0.48 +0.2 1,167,653 + MMP_RS06100 0.51 +0.3 1,167,707 + MMP_RS06100 0.61 +0.2 1,167,740 + MMP_RS06100 0.68 -0.2 1,167,741 - MMP_RS06100 0.68 +0.3 1,167,742 + MMP_RS06100 0.68 -0.3 1,167,833 + MMP_RS06100 0.86 +0.1 1,167,841 - MMP_RS06100 0.87 +0.0 1,167,842 + MMP_RS06100 0.87 +0.0 1,167,852 - MMP_RS06100 0.89 -0.1 1,167,857 - -0.2 1,167,857 - -0.1 1,167,857 - +0.4 1,167,889 - +0.2 1,167,929 + +0.7 1,167,961 + +0.4 1,167,962 - +0.1 1,167,964 - -0.6 1,167,964 - -0.1 1,167,964 - +0.7 1,167,965 + -0.4 1,167,965 + -0.4 1,167,966 - -0.3 1,167,966 - -0.4 1,167,966 - -0.8 1,167,967 + -0.4 1,167,974 - -1.3 1,167,975 + +0.1 1,167,986 - -1.1 1,167,989 - -1.2 1,167,989 - -0.0 1,167,990 + -0.6 1,167,990 + -0.7 1,167,991 - -0.5 1,167,991 - -0.5 1,167,994 + -0.0 1,167,994 + +0.3 1,167,996 + -0.3 1,167,996 + -0.1 1,167,996 + -0.1 1,167,996 + -0.2 1,167,996 + +0.3 1,168,053 + -1.1 1,168,059 + -1.1 1,168,067 - -1.1 1,168,097 + MMP_RS06105 0.11 -1.3 1,168,097 + MMP_RS06105 0.11 -1.3 1,168,097 + MMP_RS06105 0.11 -1.0 1,168,101 + MMP_RS06105 0.12 -1.1 1,168,141 + MMP_RS06105 0.20 -0.9 1,168,216 - MMP_RS06105 0.34 -1.2 1,168,220 - MMP_RS06105 0.34 -1.5 1,168,228 - MMP_RS06105 0.36 -1.6 1,168,249 - MMP_RS06105 0.40 -0.6 1,168,250 + MMP_RS06105 0.40 -1.2 1,168,322 + MMP_RS06105 0.53 -1.1 1,168,412 + MMP_RS06105 0.70 -1.4 1,168,415 + MMP_RS06105 0.70 -0.1 1,168,419 + MMP_RS06105 0.71 -0.7 1,168,422 - MMP_RS06105 0.72 +0.4 1,168,454 + MMP_RS06105 0.78 -0.5 1,168,458 + MMP_RS06105 0.78 -0.4 1,168,465 - MMP_RS06105 0.80 -1.1 1,168,586 - +0.5 1,168,803 - MMP_RS06110 0.10 +1.3 1,168,849 - MMP_RS06110 0.13 -0.1 1,169,141 + MMP_RS06110 0.27 -0.8 1,169,362 - MMP_RS06110 0.37 -0.4
Or see this region's nucleotide sequence