Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04605 and MMP_RS04610 are separated by 149 nucleotides MMP_RS04610 and MMP_RS04615 are separated by 121 nucleotides MMP_RS04615 and MMP_RS04620 overlap by 8 nucleotides MMP_RS04620 and MMP_RS04625 are separated by 197 nucleotides
MMP_RS04605: MMP_RS04605 - cobalt ECF transporter T component CbiQ, at 879,295 to 880,062
_RS04605
MMP_RS04610: MMP_RS04610 - Dabb family protein, at 880,212 to 880,514
_RS04610
MMP_RS04615: MMP_RS04615 - PDGLE domain-containing protein, at 880,636 to 880,962
_RS04615
MMP_RS04620: MMP_RS04620 - cobalt transporter CbiM, at 880,955 to 881,593
_RS04620
MMP_RS04625: MMP_RS04625 - DEAD/DEAH box helicase, at 881,791 to 884,034
_RS04625
Position (kb) 880
881 Strain fitness (log2 ratio) -1
0
1 at 879.656 kb on + strand, within MMP_RS04605 at 879.993 kb on - strand at 880.000 kb on - strand at 880.087 kb on + strand at 880.089 kb on - strand at 880.089 kb on - strand at 880.089 kb on - strand at 880.090 kb on + strand at 880.094 kb on - strand at 880.110 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.122 kb on - strand at 880.128 kb on + strand at 880.132 kb on - strand at 880.132 kb on - strand at 880.139 kb on - strand at 880.140 kb on + strand at 880.144 kb on - strand at 880.156 kb on - strand at 880.159 kb on - strand at 880.173 kb on - strand at 880.193 kb on + strand at 880.193 kb on + strand at 880.210 kb on + strand at 880.214 kb on + strand at 880.305 kb on - strand, within MMP_RS04610 at 880.306 kb on + strand, within MMP_RS04610 at 880.306 kb on + strand, within MMP_RS04610 at 880.460 kb on - strand, within MMP_RS04610 at 880.515 kb on + strand at 880.518 kb on - strand at 880.518 kb on - strand at 880.518 kb on - strand at 880.519 kb on + strand at 880.519 kb on + strand at 880.562 kb on - strand at 880.568 kb on - strand at 880.568 kb on - strand at 880.569 kb on + strand at 880.569 kb on + strand at 880.572 kb on - strand at 880.576 kb on + strand at 880.576 kb on + strand at 880.704 kb on - strand, within MMP_RS04615 at 880.889 kb on + strand, within MMP_RS04615 at 880.912 kb on - strand at 880.912 kb on - strand, within MMP_RS04615 at 880.913 kb on + strand, within MMP_RS04615 at 881.024 kb on - strand, within MMP_RS04620 at 881.223 kb on - strand, within MMP_RS04620 at 881.223 kb on - strand, within MMP_RS04620 at 881.223 kb on - strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.232 kb on + strand, within MMP_RS04620 at 881.319 kb on + strand, within MMP_RS04620 at 881.331 kb on + strand, within MMP_RS04620 at 881.337 kb on + strand, within MMP_RS04620 at 881.340 kb on + strand, within MMP_RS04620 at 881.366 kb on - strand, within MMP_RS04620 at 881.415 kb on + strand, within MMP_RS04620 at 881.446 kb on - strand, within MMP_RS04620 at 881.464 kb on - strand, within MMP_RS04620 at 881.522 kb on - strand, within MMP_RS04620 at 881.523 kb on + strand, within MMP_RS04620 at 881.572 kb on - strand at 881.585 kb on - strand at 881.585 kb on - strand at 881.585 kb on - strand at 881.585 kb on - strand at 881.631 kb on + strand at 881.634 kb on - strand at 881.635 kb on + strand at 881.646 kb on - strand at 881.646 kb on - strand at 881.649 kb on - strand at 881.649 kb on - strand at 881.649 kb on - strand at 881.650 kb on + strand at 881.650 kb on + strand at 881.650 kb on + strand at 881.650 kb on + strand at 881.650 kb on + strand at 881.663 kb on - strand at 881.668 kb on + strand at 881.675 kb on + strand at 881.684 kb on - strand at 881.684 kb on - strand at 881.688 kb on + strand at 881.690 kb on - strand at 881.691 kb on + strand at 881.691 kb on + strand at 881.694 kb on - strand at 881.695 kb on + strand at 881.695 kb on + strand at 881.695 kb on + strand at 881.700 kb on - strand at 881.701 kb on + strand at 881.703 kb on - strand at 881.703 kb on - strand at 881.703 kb on - strand at 881.703 kb on - strand at 881.703 kb on - strand at 881.704 kb on + strand at 881.704 kb on + strand at 881.704 kb on + strand at 881.704 kb on + strand at 881.707 kb on - strand at 881.707 kb on - strand at 881.707 kb on - strand at 881.707 kb on - strand at 881.708 kb on + strand at 881.736 kb on + strand at 881.740 kb on - strand at 881.740 kb on - strand at 881.743 kb on + strand at 881.758 kb on + strand at 881.799 kb on + strand at 881.835 kb on + strand at 881.902 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 879,656 + MMP_RS04605 0.47 -0.9 879,993 - -0.4 880,000 - -0.4 880,087 + -0.4 880,089 - +0.2 880,089 - -0.4 880,089 - -0.3 880,090 + -0.7 880,094 - -1.1 880,110 + -0.7 880,117 + -0.4 880,117 + -0.4 880,117 + +0.3 880,117 + -0.2 880,122 - -0.2 880,128 + -0.3 880,132 - -0.3 880,132 - +0.3 880,139 - +0.1 880,140 + -0.1 880,144 - +0.2 880,156 - -0.2 880,159 - -0.2 880,173 - +0.1 880,193 + -0.2 880,193 + -0.2 880,210 + +0.4 880,214 + +0.3 880,305 - MMP_RS04610 0.31 +0.2 880,306 + MMP_RS04610 0.31 -0.3 880,306 + MMP_RS04610 0.31 +0.3 880,460 - MMP_RS04610 0.82 -0.1 880,515 + -0.3 880,518 - -0.1 880,518 - +0.0 880,518 - +0.2 880,519 + -0.4 880,519 + -0.1 880,562 - +0.2 880,568 - -0.2 880,568 - +0.1 880,569 + +0.1 880,569 + +0.2 880,572 - +0.2 880,576 + +0.3 880,576 + +0.7 880,704 - MMP_RS04615 0.21 -0.7 880,889 + MMP_RS04615 0.77 -1.0 880,912 - -0.1 880,912 - MMP_RS04615 0.84 -0.3 880,913 + MMP_RS04615 0.85 -0.6 881,024 - MMP_RS04620 0.11 -1.5 881,223 - MMP_RS04620 0.42 -0.7 881,223 - MMP_RS04620 0.42 +0.5 881,223 - MMP_RS04620 0.42 -0.7 881,224 + MMP_RS04620 0.42 -0.1 881,224 + MMP_RS04620 0.42 -0.6 881,224 + MMP_RS04620 0.42 -0.9 881,224 + MMP_RS04620 0.42 -1.1 881,224 + MMP_RS04620 0.42 -0.5 881,224 + MMP_RS04620 0.42 -0.4 881,224 + MMP_RS04620 0.42 -0.6 881,224 + MMP_RS04620 0.42 -0.2 881,224 + MMP_RS04620 0.42 -0.3 881,232 + MMP_RS04620 0.43 -1.0 881,319 + MMP_RS04620 0.57 -0.6 881,331 + MMP_RS04620 0.59 -0.7 881,337 + MMP_RS04620 0.60 -0.7 881,340 + MMP_RS04620 0.60 -0.3 881,366 - MMP_RS04620 0.64 -0.5 881,415 + MMP_RS04620 0.72 -0.5 881,446 - MMP_RS04620 0.77 +0.1 881,464 - MMP_RS04620 0.80 -0.2 881,522 - MMP_RS04620 0.89 -0.3 881,523 + MMP_RS04620 0.89 +0.1 881,572 - -0.2 881,585 - -0.7 881,585 - -0.6 881,585 - -0.3 881,585 - +0.2 881,631 + -0.5 881,634 - -0.8 881,635 + -0.4 881,646 - +0.1 881,646 - -0.6 881,649 - -0.1 881,649 - -0.6 881,649 - -0.2 881,650 + -0.9 881,650 + -0.7 881,650 + -0.6 881,650 + -0.7 881,650 + -0.2 881,663 - -0.7 881,668 + -0.7 881,675 + +0.5 881,684 - +0.2 881,684 - -0.0 881,688 + -0.1 881,690 - +0.3 881,691 + -0.2 881,691 + +0.1 881,694 - -0.2 881,695 + -0.2 881,695 + +0.3 881,695 + +0.5 881,700 - +0.7 881,701 + +0.3 881,703 - +0.4 881,703 - +0.5 881,703 - -0.1 881,703 - +0.0 881,703 - -0.2 881,704 + -0.0 881,704 + +0.1 881,704 + -0.2 881,704 + -0.4 881,707 - +0.3 881,707 - +0.0 881,707 - +0.2 881,707 - -0.1 881,708 + +0.4 881,736 + -0.1 881,740 - +0.5 881,740 - +0.6 881,743 + -0.2 881,758 + +0.7 881,799 + -0.2 881,835 + -0.2 881,902 + -0.0
Or see this region's nucleotide sequence