Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04600 and MMP_RS04605 are separated by 154 nucleotides MMP_RS04605 and MMP_RS04610 are separated by 149 nucleotides MMP_RS04610 and MMP_RS04615 are separated by 121 nucleotides MMP_RS04615 and MMP_RS04620 overlap by 8 nucleotides
MMP_RS04600: MMP_RS04600 - tetratricopeptide repeat protein, at 877,974 to 879,140
_RS04600
MMP_RS04605: MMP_RS04605 - cobalt ECF transporter T component CbiQ, at 879,295 to 880,062
_RS04605
MMP_RS04610: MMP_RS04610 - Dabb family protein, at 880,212 to 880,514
_RS04610
MMP_RS04615: MMP_RS04615 - PDGLE domain-containing protein, at 880,636 to 880,962
_RS04615
MMP_RS04620: MMP_RS04620 - cobalt transporter CbiM, at 880,955 to 881,593
_RS04620
Position (kb) 879
880
881 Strain fitness (log2 ratio) -1
0
1 at 878.338 kb on - strand, within MMP_RS04600 at 878.339 kb on + strand, within MMP_RS04600 at 878.354 kb on + strand, within MMP_RS04600 at 878.373 kb on - strand, within MMP_RS04600 at 878.373 kb on - strand, within MMP_RS04600 at 878.373 kb on - strand, within MMP_RS04600 at 878.374 kb on + strand, within MMP_RS04600 at 878.409 kb on - strand, within MMP_RS04600 at 878.410 kb on + strand, within MMP_RS04600 at 878.513 kb on - strand, within MMP_RS04600 at 878.524 kb on + strand, within MMP_RS04600 at 878.528 kb on + strand, within MMP_RS04600 at 878.531 kb on - strand, within MMP_RS04600 at 878.532 kb on + strand, within MMP_RS04600 at 878.532 kb on + strand, within MMP_RS04600 at 878.709 kb on + strand, within MMP_RS04600 at 878.709 kb on + strand, within MMP_RS04600 at 878.710 kb on - strand, within MMP_RS04600 at 878.711 kb on + strand, within MMP_RS04600 at 878.711 kb on + strand, within MMP_RS04600 at 878.728 kb on + strand, within MMP_RS04600 at 878.732 kb on - strand, within MMP_RS04600 at 878.732 kb on - strand, within MMP_RS04600 at 878.735 kb on - strand, within MMP_RS04600 at 878.735 kb on - strand, within MMP_RS04600 at 878.736 kb on + strand, within MMP_RS04600 at 878.738 kb on - strand, within MMP_RS04600 at 878.738 kb on - strand, within MMP_RS04600 at 878.739 kb on + strand, within MMP_RS04600 at 878.740 kb on - strand, within MMP_RS04600 at 878.741 kb on + strand, within MMP_RS04600 at 878.741 kb on + strand, within MMP_RS04600 at 878.765 kb on - strand, within MMP_RS04600 at 878.776 kb on + strand, within MMP_RS04600 at 878.776 kb on + strand, within MMP_RS04600 at 878.779 kb on - strand, within MMP_RS04600 at 878.779 kb on - strand, within MMP_RS04600 at 878.882 kb on - strand, within MMP_RS04600 at 878.891 kb on - strand, within MMP_RS04600 at 878.922 kb on - strand, within MMP_RS04600 at 879.062 kb on - strand at 879.062 kb on - strand at 879.062 kb on - strand at 879.063 kb on + strand at 879.133 kb on + strand at 879.133 kb on + strand at 879.162 kb on + strand at 879.164 kb on + strand at 879.164 kb on + strand at 879.166 kb on - strand at 879.167 kb on + strand at 879.169 kb on - strand at 879.169 kb on - strand at 879.170 kb on + strand at 879.170 kb on + strand at 879.170 kb on + strand at 879.189 kb on - strand at 879.193 kb on - strand at 879.194 kb on + strand at 879.194 kb on + strand at 879.201 kb on - strand at 879.202 kb on + strand at 879.236 kb on + strand at 879.236 kb on + strand at 879.237 kb on - strand at 879.244 kb on + strand at 879.250 kb on + strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.253 kb on + strand at 879.253 kb on + strand at 879.253 kb on + strand at 879.306 kb on - strand at 879.322 kb on - strand at 879.333 kb on - strand at 879.450 kb on + strand, within MMP_RS04605 at 879.563 kb on + strand, within MMP_RS04605 at 879.577 kb on - strand, within MMP_RS04605 at 879.592 kb on + strand, within MMP_RS04605 at 879.656 kb on + strand, within MMP_RS04605 at 879.993 kb on - strand at 880.000 kb on - strand at 880.087 kb on + strand at 880.089 kb on - strand at 880.089 kb on - strand at 880.089 kb on - strand at 880.090 kb on + strand at 880.094 kb on - strand at 880.110 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.122 kb on - strand at 880.128 kb on + strand at 880.132 kb on - strand at 880.132 kb on - strand at 880.139 kb on - strand at 880.140 kb on + strand at 880.144 kb on - strand at 880.156 kb on - strand at 880.159 kb on - strand at 880.173 kb on - strand at 880.193 kb on + strand at 880.193 kb on + strand at 880.210 kb on + strand at 880.214 kb on + strand at 880.305 kb on - strand, within MMP_RS04610 at 880.306 kb on + strand, within MMP_RS04610 at 880.306 kb on + strand, within MMP_RS04610 at 880.460 kb on - strand, within MMP_RS04610 at 880.515 kb on + strand at 880.518 kb on - strand at 880.518 kb on - strand at 880.518 kb on - strand at 880.519 kb on + strand at 880.519 kb on + strand at 880.562 kb on - strand at 880.568 kb on - strand at 880.568 kb on - strand at 880.569 kb on + strand at 880.569 kb on + strand at 880.572 kb on - strand at 880.576 kb on + strand at 880.576 kb on + strand at 880.704 kb on - strand, within MMP_RS04615 at 880.889 kb on + strand, within MMP_RS04615 at 880.912 kb on - strand at 880.912 kb on - strand, within MMP_RS04615 at 880.913 kb on + strand, within MMP_RS04615 at 881.024 kb on - strand, within MMP_RS04620
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 878,338 - MMP_RS04600 0.31 +0.3 878,339 + MMP_RS04600 0.31 -0.2 878,354 + MMP_RS04600 0.33 -0.2 878,373 - MMP_RS04600 0.34 +0.3 878,373 - MMP_RS04600 0.34 +0.4 878,373 - MMP_RS04600 0.34 -0.3 878,374 + MMP_RS04600 0.34 -0.7 878,409 - MMP_RS04600 0.37 -0.0 878,410 + MMP_RS04600 0.37 +0.4 878,513 - MMP_RS04600 0.46 +0.3 878,524 + MMP_RS04600 0.47 -0.0 878,528 + MMP_RS04600 0.47 +0.3 878,531 - MMP_RS04600 0.48 +0.2 878,532 + MMP_RS04600 0.48 -0.3 878,532 + MMP_RS04600 0.48 -0.4 878,709 + MMP_RS04600 0.63 -0.1 878,709 + MMP_RS04600 0.63 +0.3 878,710 - MMP_RS04600 0.63 -0.3 878,711 + MMP_RS04600 0.63 +0.1 878,711 + MMP_RS04600 0.63 +0.4 878,728 + MMP_RS04600 0.65 +0.1 878,732 - MMP_RS04600 0.65 -0.1 878,732 - MMP_RS04600 0.65 +0.1 878,735 - MMP_RS04600 0.65 +0.2 878,735 - MMP_RS04600 0.65 +0.1 878,736 + MMP_RS04600 0.65 -0.0 878,738 - MMP_RS04600 0.65 +0.2 878,738 - MMP_RS04600 0.65 -0.0 878,739 + MMP_RS04600 0.66 +0.1 878,740 - MMP_RS04600 0.66 -0.2 878,741 + MMP_RS04600 0.66 +1.1 878,741 + MMP_RS04600 0.66 +0.2 878,765 - MMP_RS04600 0.68 +0.2 878,776 + MMP_RS04600 0.69 +0.2 878,776 + MMP_RS04600 0.69 +0.4 878,779 - MMP_RS04600 0.69 -0.0 878,779 - MMP_RS04600 0.69 -0.1 878,882 - MMP_RS04600 0.78 -0.4 878,891 - MMP_RS04600 0.79 +0.1 878,922 - MMP_RS04600 0.81 -0.3 879,062 - -0.4 879,062 - -0.1 879,062 - +0.2 879,063 + -0.1 879,133 + +0.4 879,133 + +0.2 879,162 + -0.3 879,164 + -0.1 879,164 + +0.1 879,166 - -0.4 879,167 + -0.2 879,169 - +0.2 879,169 - -0.7 879,170 + +0.1 879,170 + +0.4 879,170 + -0.3 879,189 - +0.1 879,193 - -0.2 879,194 + +0.0 879,194 + +0.2 879,201 - +0.2 879,202 + -0.3 879,236 + -0.0 879,236 + +0.3 879,237 - +0.2 879,244 + +0.1 879,250 + +0.5 879,252 - -0.1 879,252 - +0.2 879,252 - +0.6 879,252 - +0.6 879,252 - +0.1 879,252 - -0.1 879,252 - +0.2 879,253 + -0.0 879,253 + +0.9 879,253 + +0.1 879,306 - -0.4 879,322 - -0.7 879,333 - -0.9 879,450 + MMP_RS04605 0.20 -0.4 879,563 + MMP_RS04605 0.35 -0.8 879,577 - MMP_RS04605 0.37 -1.3 879,592 + MMP_RS04605 0.39 -0.9 879,656 + MMP_RS04605 0.47 -0.9 879,993 - -0.4 880,000 - -0.4 880,087 + -0.4 880,089 - +0.2 880,089 - -0.4 880,089 - -0.3 880,090 + -0.7 880,094 - -1.1 880,110 + -0.7 880,117 + -0.4 880,117 + -0.4 880,117 + +0.3 880,117 + -0.2 880,122 - -0.2 880,128 + -0.3 880,132 - -0.3 880,132 - +0.3 880,139 - +0.1 880,140 + -0.1 880,144 - +0.2 880,156 - -0.2 880,159 - -0.2 880,173 - +0.1 880,193 + -0.2 880,193 + -0.2 880,210 + +0.4 880,214 + +0.3 880,305 - MMP_RS04610 0.31 +0.2 880,306 + MMP_RS04610 0.31 -0.3 880,306 + MMP_RS04610 0.31 +0.3 880,460 - MMP_RS04610 0.82 -0.1 880,515 + -0.3 880,518 - -0.1 880,518 - +0.0 880,518 - +0.2 880,519 + -0.4 880,519 + -0.1 880,562 - +0.2 880,568 - -0.2 880,568 - +0.1 880,569 + +0.1 880,569 + +0.2 880,572 - +0.2 880,576 + +0.3 880,576 + +0.7 880,704 - MMP_RS04615 0.21 -0.7 880,889 + MMP_RS04615 0.77 -1.0 880,912 - -0.1 880,912 - MMP_RS04615 0.84 -0.3 880,913 + MMP_RS04615 0.85 -0.6 881,024 - MMP_RS04620 0.11 -1.5
Or see this region's nucleotide sequence