Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04220 and MMP_RS04225 are separated by 86 nucleotides MMP_RS04225 and MMP_RS04230 are separated by 80 nucleotides MMP_RS04230 and MMP_RS04235 are separated by 334 nucleotides
MMP_RS04220: MMP_RS04220 - queuosine precursor transporter, at 802,414 to 803,022
_RS04220
MMP_RS04225: MMP_RS04225 - hypothetical protein, at 803,109 to 803,621
_RS04225
MMP_RS04230: MMP_RS04230 - hypothetical protein, at 803,702 to 805,855
_RS04230
MMP_RS04235: MMP_RS04235 - hypothetical protein, at 806,190 to 807,299
_RS04235
Position (kb) 803
804
805
806 Strain fitness (log2 ratio) -2
-1
0
1
2 at 802.723 kb on - strand, within MMP_RS04220 at 802.748 kb on - strand, within MMP_RS04220 at 802.869 kb on - strand, within MMP_RS04220 at 802.879 kb on - strand, within MMP_RS04220 at 802.880 kb on + strand, within MMP_RS04220 at 802.883 kb on - strand, within MMP_RS04220 at 802.971 kb on - strand at 802.971 kb on - strand at 802.971 kb on - strand at 802.971 kb on - strand at 802.971 kb on - strand at 802.972 kb on + strand at 802.972 kb on + strand at 803.016 kb on - strand at 803.032 kb on - strand at 803.033 kb on + strand at 803.036 kb on - strand at 803.036 kb on - strand at 803.037 kb on + strand at 803.046 kb on + strand at 803.081 kb on + strand at 803.126 kb on + strand at 803.130 kb on - strand at 803.151 kb on - strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.164 kb on + strand, within MMP_RS04225 at 803.186 kb on - strand, within MMP_RS04225 at 803.196 kb on + strand, within MMP_RS04225 at 803.264 kb on - strand, within MMP_RS04225 at 803.265 kb on + strand, within MMP_RS04225 at 803.359 kb on - strand, within MMP_RS04225 at 803.405 kb on - strand, within MMP_RS04225 at 803.405 kb on - strand, within MMP_RS04225 at 803.476 kb on + strand, within MMP_RS04225 at 803.477 kb on - strand, within MMP_RS04225 at 803.622 kb on - strand at 803.622 kb on - strand at 803.623 kb on + strand at 803.623 kb on + strand at 803.624 kb on - strand at 803.624 kb on - strand at 803.624 kb on - strand at 803.643 kb on - strand at 803.643 kb on - strand at 803.659 kb on + strand at 803.663 kb on + strand at 803.663 kb on + strand at 803.663 kb on + strand at 803.663 kb on + strand at 803.664 kb on - strand at 803.694 kb on - strand at 803.694 kb on - strand at 803.695 kb on + strand at 803.703 kb on - strand at 803.714 kb on - strand at 803.714 kb on - strand at 803.715 kb on + strand at 803.715 kb on + strand at 803.715 kb on + strand at 803.826 kb on - strand at 803.827 kb on + strand at 803.852 kb on + strand at 803.865 kb on + strand at 803.921 kb on + strand, within MMP_RS04230 at 803.921 kb on + strand, within MMP_RS04230 at 803.946 kb on - strand, within MMP_RS04230 at 803.946 kb on - strand, within MMP_RS04230 at 803.946 kb on - strand, within MMP_RS04230 at 803.947 kb on + strand, within MMP_RS04230 at 804.080 kb on + strand, within MMP_RS04230 at 804.157 kb on - strand, within MMP_RS04230 at 804.173 kb on + strand, within MMP_RS04230 at 804.198 kb on - strand, within MMP_RS04230 at 804.200 kb on - strand, within MMP_RS04230 at 804.249 kb on + strand, within MMP_RS04230 at 804.296 kb on + strand, within MMP_RS04230 at 804.298 kb on - strand, within MMP_RS04230 at 804.424 kb on - strand, within MMP_RS04230 at 804.424 kb on - strand, within MMP_RS04230 at 804.515 kb on - strand, within MMP_RS04230 at 804.548 kb on - strand, within MMP_RS04230 at 804.607 kb on + strand, within MMP_RS04230 at 804.607 kb on + strand, within MMP_RS04230 at 804.625 kb on - strand, within MMP_RS04230 at 804.723 kb on - strand, within MMP_RS04230 at 804.725 kb on - strand, within MMP_RS04230 at 804.725 kb on - strand, within MMP_RS04230 at 804.725 kb on - strand, within MMP_RS04230 at 804.726 kb on + strand, within MMP_RS04230 at 804.726 kb on + strand, within MMP_RS04230 at 804.773 kb on - strand, within MMP_RS04230 at 804.774 kb on + strand, within MMP_RS04230 at 804.776 kb on + strand, within MMP_RS04230 at 804.826 kb on - strand, within MMP_RS04230 at 804.827 kb on + strand, within MMP_RS04230 at 804.827 kb on + strand, within MMP_RS04230 at 804.850 kb on - strand, within MMP_RS04230 at 804.850 kb on - strand, within MMP_RS04230 at 804.851 kb on + strand, within MMP_RS04230 at 804.851 kb on + strand, within MMP_RS04230 at 804.854 kb on + strand, within MMP_RS04230 at 804.854 kb on + strand, within MMP_RS04230 at 804.854 kb on + strand, within MMP_RS04230 at 804.855 kb on - strand, within MMP_RS04230 at 804.855 kb on - strand, within MMP_RS04230 at 804.855 kb on - strand, within MMP_RS04230 at 804.855 kb on - strand, within MMP_RS04230 at 804.855 kb on - strand, within MMP_RS04230 at 804.855 kb on - strand, within MMP_RS04230 at 804.856 kb on + strand, within MMP_RS04230 at 804.856 kb on + strand, within MMP_RS04230 at 804.856 kb on + strand, within MMP_RS04230 at 804.856 kb on + strand, within MMP_RS04230 at 804.869 kb on - strand, within MMP_RS04230 at 804.874 kb on - strand, within MMP_RS04230 at 804.874 kb on - strand, within MMP_RS04230 at 804.875 kb on + strand, within MMP_RS04230 at 804.887 kb on + strand, within MMP_RS04230 at 804.888 kb on - strand, within MMP_RS04230 at 804.910 kb on - strand, within MMP_RS04230 at 804.912 kb on - strand, within MMP_RS04230 at 804.912 kb on - strand, within MMP_RS04230 at 804.912 kb on - strand, within MMP_RS04230 at 804.912 kb on - strand, within MMP_RS04230 at 804.913 kb on + strand, within MMP_RS04230 at 804.913 kb on + strand, within MMP_RS04230 at 804.917 kb on - strand, within MMP_RS04230 at 804.917 kb on - strand, within MMP_RS04230 at 804.917 kb on - strand, within MMP_RS04230 at 804.918 kb on + strand, within MMP_RS04230 at 804.918 kb on + strand, within MMP_RS04230 at 804.918 kb on + strand, within MMP_RS04230 at 804.919 kb on - strand, within MMP_RS04230 at 804.919 kb on - strand, within MMP_RS04230 at 804.919 kb on - strand, within MMP_RS04230 at 804.920 kb on + strand, within MMP_RS04230 at 804.920 kb on + strand, within MMP_RS04230 at 804.921 kb on - strand, within MMP_RS04230 at 804.921 kb on - strand, within MMP_RS04230 at 804.921 kb on - strand, within MMP_RS04230 at 804.922 kb on + strand, within MMP_RS04230 at 804.922 kb on + strand, within MMP_RS04230 at 804.922 kb on + strand, within MMP_RS04230 at 804.924 kb on - strand, within MMP_RS04230 at 804.925 kb on + strand, within MMP_RS04230 at 804.925 kb on + strand, within MMP_RS04230 at 805.006 kb on - strand, within MMP_RS04230 at 805.200 kb on + strand, within MMP_RS04230 at 805.200 kb on + strand, within MMP_RS04230 at 805.234 kb on + strand, within MMP_RS04230 at 805.255 kb on - strand, within MMP_RS04230 at 805.305 kb on + strand, within MMP_RS04230 at 805.311 kb on + strand, within MMP_RS04230 at 805.316 kb on + strand, within MMP_RS04230 at 805.319 kb on - strand, within MMP_RS04230 at 805.320 kb on + strand, within MMP_RS04230 at 805.320 kb on + strand, within MMP_RS04230 at 805.320 kb on + strand, within MMP_RS04230 at 805.321 kb on - strand, within MMP_RS04230 at 805.321 kb on - strand, within MMP_RS04230 at 805.322 kb on + strand, within MMP_RS04230 at 805.322 kb on + strand, within MMP_RS04230 at 805.322 kb on + strand, within MMP_RS04230 at 805.352 kb on - strand, within MMP_RS04230 at 805.353 kb on + strand, within MMP_RS04230 at 805.353 kb on + strand, within MMP_RS04230 at 805.357 kb on - strand, within MMP_RS04230 at 805.358 kb on + strand, within MMP_RS04230 at 805.362 kb on - strand, within MMP_RS04230 at 805.362 kb on - strand, within MMP_RS04230 at 805.363 kb on + strand, within MMP_RS04230 at 805.363 kb on + strand, within MMP_RS04230 at 805.406 kb on - strand, within MMP_RS04230 at 805.452 kb on - strand, within MMP_RS04230 at 805.452 kb on - strand, within MMP_RS04230 at 805.452 kb on - strand, within MMP_RS04230 at 805.453 kb on + strand, within MMP_RS04230 at 805.454 kb on - strand, within MMP_RS04230 at 805.537 kb on + strand, within MMP_RS04230 at 805.541 kb on + strand, within MMP_RS04230 at 805.551 kb on + strand, within MMP_RS04230 at 805.551 kb on + strand, within MMP_RS04230 at 805.585 kb on - strand, within MMP_RS04230 at 805.644 kb on - strand at 805.645 kb on + strand at 805.648 kb on - strand at 805.706 kb on + strand at 805.761 kb on - strand at 805.761 kb on - strand at 805.761 kb on - strand at 805.761 kb on - strand at 805.762 kb on + strand at 805.776 kb on + strand at 805.777 kb on - strand at 805.777 kb on - strand at 805.811 kb on - strand at 805.873 kb on + strand at 805.887 kb on + strand at 805.891 kb on - strand at 805.892 kb on + strand at 805.892 kb on + strand at 805.892 kb on + strand at 805.895 kb on - strand at 805.895 kb on - strand at 805.895 kb on - strand at 805.895 kb on - strand at 805.895 kb on - strand at 805.895 kb on - strand at 805.895 kb on - strand at 805.895 kb on - strand at 805.896 kb on + strand at 805.896 kb on + strand at 805.897 kb on - strand at 805.909 kb on + strand at 805.916 kb on + strand at 805.916 kb on + strand at 805.922 kb on - strand at 805.927 kb on - strand at 805.928 kb on + strand at 805.966 kb on - strand at 805.967 kb on + strand at 805.970 kb on - strand at 805.971 kb on + strand at 805.978 kb on + strand at 806.007 kb on - strand at 806.007 kb on - strand at 806.016 kb on + strand at 806.028 kb on + strand at 806.050 kb on - strand at 806.050 kb on - strand at 806.055 kb on + strand at 806.114 kb on - strand at 806.115 kb on + strand at 806.115 kb on + strand at 806.120 kb on - strand at 806.138 kb on - strand at 806.139 kb on + strand at 806.142 kb on - strand at 806.155 kb on - strand at 806.158 kb on - strand at 806.159 kb on + strand at 806.166 kb on + strand at 806.167 kb on - strand at 806.168 kb on + strand at 806.170 kb on - strand at 806.250 kb on + strand at 806.266 kb on + strand at 806.266 kb on + strand at 806.289 kb on + strand at 806.324 kb on + strand, within MMP_RS04235 at 806.337 kb on + strand, within MMP_RS04235 at 806.369 kb on - strand, within MMP_RS04235 at 806.501 kb on - strand, within MMP_RS04235 at 806.502 kb on + strand, within MMP_RS04235 at 806.533 kb on + strand, within MMP_RS04235 at 806.651 kb on - strand, within MMP_RS04235 at 806.652 kb on + strand, within MMP_RS04235 at 806.667 kb on + strand, within MMP_RS04235 at 806.694 kb on - strand, within MMP_RS04235 at 806.702 kb on + strand, within MMP_RS04235 at 806.711 kb on + strand, within MMP_RS04235 at 806.761 kb on - strand, within MMP_RS04235 at 806.761 kb on - strand, within MMP_RS04235 at 806.789 kb on + strand, within MMP_RS04235 at 806.791 kb on - strand, within MMP_RS04235 at 806.792 kb on + strand, within MMP_RS04235 at 806.853 kb on - strand, within MMP_RS04235
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 802,723 - MMP_RS04220 0.51 -0.3 802,748 - MMP_RS04220 0.55 +0.0 802,869 - MMP_RS04220 0.75 +0.2 802,879 - MMP_RS04220 0.76 +0.1 802,880 + MMP_RS04220 0.77 -0.4 802,883 - MMP_RS04220 0.77 +0.1 802,971 - -0.1 802,971 - +0.2 802,971 - +0.0 802,971 - -0.1 802,971 - -0.1 802,972 + -0.4 802,972 + -0.3 803,016 - -0.2 803,032 - -0.4 803,033 + +0.0 803,036 - +0.2 803,036 - -0.5 803,037 + -0.5 803,046 + -0.2 803,081 + -0.4 803,126 + +0.4 803,130 - +0.3 803,151 - +0.1 803,152 + +0.2 803,152 + -0.1 803,164 + MMP_RS04225 0.11 +0.4 803,186 - MMP_RS04225 0.15 +0.2 803,196 + MMP_RS04225 0.17 +0.2 803,264 - MMP_RS04225 0.30 -0.2 803,265 + MMP_RS04225 0.30 -0.0 803,359 - MMP_RS04225 0.49 +0.2 803,405 - MMP_RS04225 0.58 -0.3 803,405 - MMP_RS04225 0.58 -0.3 803,476 + MMP_RS04225 0.72 -0.4 803,477 - MMP_RS04225 0.72 +0.1 803,622 - -0.4 803,622 - -0.3 803,623 + -0.7 803,623 + -0.3 803,624 - -0.1 803,624 - -0.1 803,624 - -0.4 803,643 - +0.0 803,643 - +1.0 803,659 + -0.1 803,663 + +0.2 803,663 + +0.2 803,663 + +0.1 803,663 + -0.1 803,664 - -0.2 803,694 - +0.1 803,694 - +0.2 803,695 + -0.0 803,703 - -0.3 803,714 - +0.1 803,714 - -0.0 803,715 + -0.1 803,715 + -2.5 803,715 + -0.1 803,826 - -0.7 803,827 + +0.1 803,852 + +0.2 803,865 + -0.2 803,921 + MMP_RS04230 0.10 +0.3 803,921 + MMP_RS04230 0.10 -1.9 803,946 - MMP_RS04230 0.11 +0.0 803,946 - MMP_RS04230 0.11 +0.0 803,946 - MMP_RS04230 0.11 +0.6 803,947 + MMP_RS04230 0.11 -0.1 804,080 + MMP_RS04230 0.18 -0.1 804,157 - MMP_RS04230 0.21 -0.3 804,173 + MMP_RS04230 0.22 -0.2 804,198 - MMP_RS04230 0.23 -0.0 804,200 - MMP_RS04230 0.23 +0.0 804,249 + MMP_RS04230 0.25 -0.4 804,296 + MMP_RS04230 0.28 +0.0 804,298 - MMP_RS04230 0.28 +0.1 804,424 - MMP_RS04230 0.34 -0.3 804,424 - MMP_RS04230 0.34 +0.7 804,515 - MMP_RS04230 0.38 -0.1 804,548 - MMP_RS04230 0.39 -0.1 804,607 + MMP_RS04230 0.42 +0.5 804,607 + MMP_RS04230 0.42 -0.2 804,625 - MMP_RS04230 0.43 +0.4 804,723 - MMP_RS04230 0.47 -0.3 804,725 - MMP_RS04230 0.47 +0.8 804,725 - MMP_RS04230 0.47 -0.1 804,725 - MMP_RS04230 0.47 +0.1 804,726 + MMP_RS04230 0.48 +0.3 804,726 + MMP_RS04230 0.48 -0.0 804,773 - MMP_RS04230 0.50 +0.1 804,774 + MMP_RS04230 0.50 -0.2 804,776 + MMP_RS04230 0.50 +0.3 804,826 - MMP_RS04230 0.52 -0.3 804,827 + MMP_RS04230 0.52 -0.2 804,827 + MMP_RS04230 0.52 -0.2 804,850 - MMP_RS04230 0.53 +0.4 804,850 - MMP_RS04230 0.53 -0.0 804,851 + MMP_RS04230 0.53 -0.4 804,851 + MMP_RS04230 0.53 +0.1 804,854 + MMP_RS04230 0.53 -0.0 804,854 + MMP_RS04230 0.53 -0.3 804,854 + MMP_RS04230 0.53 +0.4 804,855 - MMP_RS04230 0.54 +0.2 804,855 - MMP_RS04230 0.54 +0.1 804,855 - MMP_RS04230 0.54 +0.5 804,855 - MMP_RS04230 0.54 +0.1 804,855 - MMP_RS04230 0.54 +0.1 804,855 - MMP_RS04230 0.54 -0.1 804,856 + MMP_RS04230 0.54 +0.0 804,856 + MMP_RS04230 0.54 -0.1 804,856 + MMP_RS04230 0.54 -0.1 804,856 + MMP_RS04230 0.54 -0.2 804,869 - MMP_RS04230 0.54 -0.4 804,874 - MMP_RS04230 0.54 +0.1 804,874 - MMP_RS04230 0.54 -0.2 804,875 + MMP_RS04230 0.54 +0.3 804,887 + MMP_RS04230 0.55 -0.2 804,888 - MMP_RS04230 0.55 +0.0 804,910 - MMP_RS04230 0.56 +0.6 804,912 - MMP_RS04230 0.56 +0.1 804,912 - MMP_RS04230 0.56 +0.3 804,912 - MMP_RS04230 0.56 -0.1 804,912 - MMP_RS04230 0.56 -0.1 804,913 + MMP_RS04230 0.56 -0.1 804,913 + MMP_RS04230 0.56 -0.3 804,917 - MMP_RS04230 0.56 +0.2 804,917 - MMP_RS04230 0.56 -0.2 804,917 - MMP_RS04230 0.56 -0.1 804,918 + MMP_RS04230 0.56 -0.3 804,918 + MMP_RS04230 0.56 -0.2 804,918 + MMP_RS04230 0.56 +0.3 804,919 - MMP_RS04230 0.56 +0.2 804,919 - MMP_RS04230 0.56 -0.0 804,919 - MMP_RS04230 0.56 +0.7 804,920 + MMP_RS04230 0.57 +0.3 804,920 + MMP_RS04230 0.57 +0.0 804,921 - MMP_RS04230 0.57 +0.4 804,921 - MMP_RS04230 0.57 -0.4 804,921 - MMP_RS04230 0.57 -0.1 804,922 + MMP_RS04230 0.57 +0.1 804,922 + MMP_RS04230 0.57 +0.5 804,922 + MMP_RS04230 0.57 +0.5 804,924 - MMP_RS04230 0.57 -0.2 804,925 + MMP_RS04230 0.57 -0.2 804,925 + MMP_RS04230 0.57 +0.1 805,006 - MMP_RS04230 0.61 -1.0 805,200 + MMP_RS04230 0.70 -0.1 805,200 + MMP_RS04230 0.70 -0.1 805,234 + MMP_RS04230 0.71 -0.4 805,255 - MMP_RS04230 0.72 +0.4 805,305 + MMP_RS04230 0.74 -0.4 805,311 + MMP_RS04230 0.75 -0.3 805,316 + MMP_RS04230 0.75 -0.3 805,319 - MMP_RS04230 0.75 +0.2 805,320 + MMP_RS04230 0.75 -0.1 805,320 + MMP_RS04230 0.75 -0.1 805,320 + MMP_RS04230 0.75 -0.3 805,321 - MMP_RS04230 0.75 +0.0 805,321 - MMP_RS04230 0.75 -0.6 805,322 + MMP_RS04230 0.75 -0.3 805,322 + MMP_RS04230 0.75 -0.2 805,322 + MMP_RS04230 0.75 -0.5 805,352 - MMP_RS04230 0.77 +0.0 805,353 + MMP_RS04230 0.77 -0.2 805,353 + MMP_RS04230 0.77 +0.2 805,357 - MMP_RS04230 0.77 +0.1 805,358 + MMP_RS04230 0.77 +0.1 805,362 - MMP_RS04230 0.77 -0.0 805,362 - MMP_RS04230 0.77 +2.1 805,363 + MMP_RS04230 0.77 -0.4 805,363 + MMP_RS04230 0.77 +0.5 805,406 - MMP_RS04230 0.79 -0.1 805,452 - MMP_RS04230 0.81 +0.6 805,452 - MMP_RS04230 0.81 +0.3 805,452 - MMP_RS04230 0.81 +0.1 805,453 + MMP_RS04230 0.81 -0.1 805,454 - MMP_RS04230 0.81 +0.4 805,537 + MMP_RS04230 0.85 -0.2 805,541 + MMP_RS04230 0.85 +0.3 805,551 + MMP_RS04230 0.86 +0.1 805,551 + MMP_RS04230 0.86 +0.1 805,585 - MMP_RS04230 0.87 -0.1 805,644 - +0.1 805,645 + -0.4 805,648 - +0.2 805,706 + +0.2 805,761 - +0.5 805,761 - -0.2 805,761 - -0.2 805,761 - -0.1 805,762 + +0.0 805,776 + +0.9 805,777 - -0.1 805,777 - -0.1 805,811 - -0.6 805,873 + +0.1 805,887 + +0.0 805,891 - -0.1 805,892 + -0.2 805,892 + -0.3 805,892 + -0.0 805,895 - -0.4 805,895 - -0.4 805,895 - -0.2 805,895 - +0.5 805,895 - +0.3 805,895 - -0.8 805,895 - +0.1 805,895 - +0.1 805,896 + -0.2 805,896 + -0.2 805,897 - +0.0 805,909 + +0.2 805,916 + -0.4 805,916 + -0.2 805,922 - -0.0 805,927 - -0.5 805,928 + +0.2 805,966 - -0.1 805,967 + -0.1 805,970 - +0.2 805,971 + -0.4 805,978 + -0.2 806,007 - -0.3 806,007 - -0.1 806,016 + -0.1 806,028 + -0.2 806,050 - -0.1 806,050 - +1.1 806,055 + -0.0 806,114 - -0.0 806,115 + +0.4 806,115 + +0.4 806,120 - -0.2 806,138 - -0.0 806,139 + -0.4 806,142 - +0.4 806,155 - +0.5 806,158 - -0.0 806,159 + +0.5 806,166 + -0.1 806,167 - -0.3 806,168 + +0.5 806,170 - +0.5 806,250 + -0.2 806,266 + +0.2 806,266 + +0.0 806,289 + -0.1 806,324 + MMP_RS04235 0.12 -0.1 806,337 + MMP_RS04235 0.13 +0.2 806,369 - MMP_RS04235 0.16 +0.2 806,501 - MMP_RS04235 0.28 +0.2 806,502 + MMP_RS04235 0.28 -0.2 806,533 + MMP_RS04235 0.31 +0.4 806,651 - MMP_RS04235 0.42 +1.4 806,652 + MMP_RS04235 0.42 +0.3 806,667 + MMP_RS04235 0.43 -0.3 806,694 - MMP_RS04235 0.45 -0.8 806,702 + MMP_RS04235 0.46 -0.1 806,711 + MMP_RS04235 0.47 -0.5 806,761 - MMP_RS04235 0.51 +0.2 806,761 - MMP_RS04235 0.51 -0.2 806,789 + MMP_RS04235 0.54 -0.2 806,791 - MMP_RS04235 0.54 -0.0 806,792 + MMP_RS04235 0.54 +0.5 806,853 - MMP_RS04235 0.60 -0.0
Or see this region's nucleotide sequence