Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04205 and MMP_RS04210 are separated by 145 nucleotides MMP_RS04210 and MMP_RS04215 are separated by 11 nucleotides MMP_RS04215 and MMP_RS04220 are separated by 48 nucleotides
MMP_RS04205: MMP_RS04205 - carboxymuconolactone decarboxylase family protein, at 799,477 to 800,229
_RS04205
MMP_RS04210: MMP_RS04210 - aldo/keto reductase, at 800,375 to 801,568
_RS04210
MMP_RS04215: MMP_RS04215 - nickel pincer cofactor biosynthesis protein LarB, at 801,580 to 802,365
_RS04215
MMP_RS04220: MMP_RS04220 - queuosine precursor transporter, at 802,414 to 803,022
_RS04220
Position (kb) 800
801
802 Strain fitness (log2 ratio) -1
0
1 at 799.470 kb on - strand at 799.630 kb on + strand, within MMP_RS04205 at 799.684 kb on + strand, within MMP_RS04205 at 799.762 kb on - strand, within MMP_RS04205 at 799.763 kb on + strand, within MMP_RS04205 at 799.763 kb on + strand, within MMP_RS04205 at 799.814 kb on - strand, within MMP_RS04205 at 799.854 kb on - strand, within MMP_RS04205 at 799.972 kb on - strand, within MMP_RS04205 at 800.167 kb on - strand at 800.167 kb on - strand at 800.171 kb on - strand at 800.171 kb on - strand at 800.217 kb on + strand at 800.247 kb on + strand at 800.247 kb on + strand at 800.261 kb on + strand at 800.266 kb on - strand at 800.267 kb on + strand at 800.270 kb on + strand at 800.294 kb on - strand at 800.295 kb on + strand at 800.295 kb on + strand at 800.295 kb on + strand at 800.295 kb on + strand at 800.297 kb on + strand at 800.297 kb on + strand at 800.300 kb on - strand at 800.308 kb on - strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.312 kb on - strand at 800.313 kb on + strand at 800.315 kb on - strand at 800.315 kb on - strand at 800.315 kb on - strand at 800.315 kb on - strand at 800.317 kb on - strand at 800.317 kb on - strand at 800.318 kb on + strand at 800.318 kb on + strand at 800.341 kb on + strand at 800.351 kb on - strand at 800.352 kb on + strand at 800.354 kb on - strand at 800.355 kb on + strand at 800.357 kb on + strand at 800.381 kb on - strand at 800.381 kb on - strand at 800.382 kb on + strand at 800.434 kb on - strand at 800.671 kb on + strand, within MMP_RS04210 at 800.719 kb on + strand, within MMP_RS04210 at 800.871 kb on + strand, within MMP_RS04210 at 800.872 kb on - strand, within MMP_RS04210 at 800.873 kb on + strand, within MMP_RS04210 at 800.873 kb on + strand, within MMP_RS04210 at 800.892 kb on - strand, within MMP_RS04210 at 800.892 kb on - strand, within MMP_RS04210 at 800.892 kb on - strand, within MMP_RS04210 at 800.893 kb on + strand, within MMP_RS04210 at 800.893 kb on + strand, within MMP_RS04210 at 800.893 kb on + strand, within MMP_RS04210 at 800.899 kb on - strand, within MMP_RS04210 at 800.899 kb on - strand, within MMP_RS04210 at 800.899 kb on - strand, within MMP_RS04210 at 800.900 kb on + strand, within MMP_RS04210 at 800.900 kb on + strand, within MMP_RS04210 at 800.903 kb on - strand, within MMP_RS04210 at 800.903 kb on - strand, within MMP_RS04210 at 800.904 kb on + strand, within MMP_RS04210 at 800.904 kb on + strand, within MMP_RS04210 at 800.941 kb on - strand, within MMP_RS04210 at 801.003 kb on - strand, within MMP_RS04210 at 801.010 kb on - strand, within MMP_RS04210 at 801.037 kb on + strand, within MMP_RS04210 at 801.069 kb on - strand, within MMP_RS04210 at 801.232 kb on + strand, within MMP_RS04210 at 801.257 kb on + strand, within MMP_RS04210 at 801.257 kb on + strand, within MMP_RS04210 at 801.262 kb on - strand, within MMP_RS04210 at 801.326 kb on - strand, within MMP_RS04210 at 801.326 kb on - strand, within MMP_RS04210 at 801.326 kb on - strand, within MMP_RS04210 at 801.391 kb on - strand, within MMP_RS04210 at 801.392 kb on + strand, within MMP_RS04210 at 801.394 kb on + strand, within MMP_RS04210 at 801.442 kb on - strand, within MMP_RS04210 at 801.467 kb on - strand at 801.467 kb on - strand at 801.467 kb on - strand at 801.468 kb on + strand at 801.468 kb on + strand at 801.597 kb on + strand at 801.608 kb on - strand at 801.648 kb on - strand at 801.665 kb on + strand, within MMP_RS04215 at 801.687 kb on - strand, within MMP_RS04215 at 801.696 kb on - strand, within MMP_RS04215 at 801.696 kb on - strand, within MMP_RS04215 at 801.697 kb on + strand, within MMP_RS04215 at 801.697 kb on + strand, within MMP_RS04215 at 801.895 kb on + strand, within MMP_RS04215 at 802.035 kb on + strand, within MMP_RS04215 at 802.035 kb on + strand, within MMP_RS04215 at 802.037 kb on + strand, within MMP_RS04215 at 802.037 kb on + strand, within MMP_RS04215 at 802.265 kb on - strand, within MMP_RS04215 at 802.407 kb on + strand at 802.443 kb on + strand at 802.445 kb on + strand at 802.469 kb on + strand at 802.474 kb on + strand at 802.529 kb on + strand, within MMP_RS04220
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 799,470 - -0.3 799,630 + MMP_RS04205 0.20 -0.2 799,684 + MMP_RS04205 0.27 +0.1 799,762 - MMP_RS04205 0.38 -0.2 799,763 + MMP_RS04205 0.38 +0.0 799,763 + MMP_RS04205 0.38 +0.1 799,814 - MMP_RS04205 0.45 +1.1 799,854 - MMP_RS04205 0.50 +0.0 799,972 - MMP_RS04205 0.66 -0.1 800,167 - +0.4 800,167 - -0.3 800,171 - -0.0 800,171 - +0.1 800,217 + +0.0 800,247 + -0.1 800,247 + -1.1 800,261 + +0.5 800,266 - +0.2 800,267 + -0.4 800,270 + -0.3 800,294 - -0.1 800,295 + +0.1 800,295 + +0.1 800,295 + +0.0 800,295 + +0.1 800,297 + -0.1 800,297 + +0.3 800,300 - +0.3 800,308 - +0.4 800,309 + +0.2 800,309 + -0.3 800,309 + -0.0 800,309 + +0.2 800,309 + +0.5 800,309 + +0.0 800,309 + -0.2 800,312 - -0.1 800,313 + -0.2 800,315 - +0.1 800,315 - -0.6 800,315 - +0.5 800,315 - +0.2 800,317 - -0.3 800,317 - -0.1 800,318 + +0.1 800,318 + +0.1 800,341 + -0.4 800,351 - -0.0 800,352 + -0.3 800,354 - +0.1 800,355 + -0.0 800,357 + +0.5 800,381 - +0.2 800,381 - -0.1 800,382 + +0.1 800,434 - -0.1 800,671 + MMP_RS04210 0.25 +1.0 800,719 + MMP_RS04210 0.29 -0.2 800,871 + MMP_RS04210 0.42 -0.1 800,872 - MMP_RS04210 0.42 -0.2 800,873 + MMP_RS04210 0.42 +0.2 800,873 + MMP_RS04210 0.42 -0.1 800,892 - MMP_RS04210 0.43 +0.2 800,892 - MMP_RS04210 0.43 -0.3 800,892 - MMP_RS04210 0.43 -0.4 800,893 + MMP_RS04210 0.43 -0.4 800,893 + MMP_RS04210 0.43 +0.3 800,893 + MMP_RS04210 0.43 +0.2 800,899 - MMP_RS04210 0.44 -0.4 800,899 - MMP_RS04210 0.44 -0.3 800,899 - MMP_RS04210 0.44 +0.0 800,900 + MMP_RS04210 0.44 +0.7 800,900 + MMP_RS04210 0.44 -0.1 800,903 - MMP_RS04210 0.44 +0.4 800,903 - MMP_RS04210 0.44 -0.3 800,904 + MMP_RS04210 0.44 -0.0 800,904 + MMP_RS04210 0.44 +0.3 800,941 - MMP_RS04210 0.47 -0.3 801,003 - MMP_RS04210 0.53 +0.8 801,010 - MMP_RS04210 0.53 +0.1 801,037 + MMP_RS04210 0.55 +0.4 801,069 - MMP_RS04210 0.58 -0.4 801,232 + MMP_RS04210 0.72 +0.2 801,257 + MMP_RS04210 0.74 +0.0 801,257 + MMP_RS04210 0.74 +0.5 801,262 - MMP_RS04210 0.74 -0.4 801,326 - MMP_RS04210 0.80 +0.1 801,326 - MMP_RS04210 0.80 -0.2 801,326 - MMP_RS04210 0.80 -0.0 801,391 - MMP_RS04210 0.85 -0.2 801,392 + MMP_RS04210 0.85 +0.1 801,394 + MMP_RS04210 0.85 -0.0 801,442 - MMP_RS04210 0.89 -0.1 801,467 - +0.2 801,467 - -0.1 801,467 - -0.1 801,468 + +0.6 801,468 + -0.3 801,597 + -0.1 801,608 - -0.0 801,648 - +0.2 801,665 + MMP_RS04215 0.11 +0.4 801,687 - MMP_RS04215 0.14 -0.0 801,696 - MMP_RS04215 0.15 +0.5 801,696 - MMP_RS04215 0.15 +0.3 801,697 + MMP_RS04215 0.15 +0.1 801,697 + MMP_RS04215 0.15 -0.1 801,895 + MMP_RS04215 0.40 +0.1 802,035 + MMP_RS04215 0.58 +0.0 802,035 + MMP_RS04215 0.58 -0.3 802,037 + MMP_RS04215 0.58 +0.1 802,037 + MMP_RS04215 0.58 -0.7 802,265 - MMP_RS04215 0.87 +0.3 802,407 + -0.2 802,443 + +0.5 802,445 + +0.6 802,469 + -0.3 802,474 + -0.5 802,529 + MMP_RS04220 0.19 -0.0
Or see this region's nucleotide sequence