Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03290 and MMP_RS03295 are separated by 9 nucleotides MMP_RS03295 and MMP_RS03300 are separated by 323 nucleotides MMP_RS03300 and MMP_RS03305 are separated by 168 nucleotides MMP_RS03305 and MMP_RS03310 are separated by 177 nucleotides
MMP_RS03290: MMP_RS03290 - AAA family ATPase, at 619,232 to 619,768
_RS03290
MMP_RS03295: MMP_RS03295 - 50S ribosomal protein L34e, at 619,778 to 620,047
_RS03295
MMP_RS03300: MMP_RS03300 - TOBE domain-containing protein, at 620,371 to 620,577
_RS03300
MMP_RS03305: MMP_RS03305 - winged helix-turn-helix domain-containing protein, at 620,746 to 621,144
_RS03305
MMP_RS03310: MMP_RS03310 - ferrous iron transport protein B, at 621,322 to 623,265
_RS03310
Position (kb) 620
621 Strain fitness (log2 ratio) -2
-1
0
1 at 620.050 kb on - strand at 620.120 kb on - strand at 620.200 kb on - strand at 620.256 kb on - strand at 620.256 kb on - strand at 620.297 kb on - strand at 620.298 kb on + strand at 620.314 kb on - strand at 620.315 kb on + strand at 620.336 kb on - strand at 620.368 kb on - strand at 620.369 kb on + strand at 620.369 kb on + strand at 620.370 kb on - strand at 620.382 kb on - strand at 620.546 kb on - strand, within MMP_RS03300 at 620.642 kb on - strand at 620.643 kb on + strand at 620.645 kb on + strand at 620.662 kb on + strand at 620.664 kb on + strand at 620.679 kb on + strand at 620.682 kb on - strand at 620.682 kb on - strand at 620.683 kb on + strand at 620.685 kb on + strand at 620.685 kb on + strand at 620.686 kb on - strand at 620.692 kb on - strand at 620.716 kb on + strand at 620.793 kb on + strand, within MMP_RS03305 at 620.793 kb on + strand, within MMP_RS03305 at 620.793 kb on + strand, within MMP_RS03305 at 620.793 kb on + strand, within MMP_RS03305 at 620.835 kb on + strand, within MMP_RS03305 at 620.859 kb on - strand, within MMP_RS03305 at 620.859 kb on - strand, within MMP_RS03305 at 620.859 kb on - strand, within MMP_RS03305 at 620.891 kb on - strand, within MMP_RS03305 at 620.930 kb on + strand, within MMP_RS03305 at 621.127 kb on + strand at 621.142 kb on - strand at 621.167 kb on + strand at 621.196 kb on - strand at 621.239 kb on - strand at 621.239 kb on - strand at 621.267 kb on - strand at 621.268 kb on + strand at 621.268 kb on + strand at 621.271 kb on - strand at 621.273 kb on - strand at 621.323 kb on - strand at 621.334 kb on - strand at 621.334 kb on - strand at 621.350 kb on - strand at 621.350 kb on - strand at 621.355 kb on - strand at 621.390 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 620,050 - +0.1 620,120 - -0.1 620,200 - +0.3 620,256 - -0.0 620,256 - +0.3 620,297 - +0.0 620,298 + -0.0 620,314 - +0.2 620,315 + +0.4 620,336 - +0.1 620,368 - -0.2 620,369 + -0.0 620,369 + +0.4 620,370 - -0.1 620,382 - -0.2 620,546 - MMP_RS03300 0.85 -0.5 620,642 - -0.5 620,643 + -0.5 620,645 + -0.6 620,662 + -0.3 620,664 + -0.3 620,679 + -0.9 620,682 - -0.5 620,682 - -1.4 620,683 + -1.3 620,685 + -0.4 620,685 + -1.2 620,686 - +0.2 620,692 - -1.1 620,716 + -0.5 620,793 + MMP_RS03305 0.12 -0.6 620,793 + MMP_RS03305 0.12 -1.2 620,793 + MMP_RS03305 0.12 -0.5 620,793 + MMP_RS03305 0.12 -0.6 620,835 + MMP_RS03305 0.22 -0.9 620,859 - MMP_RS03305 0.28 -0.1 620,859 - MMP_RS03305 0.28 -0.8 620,859 - MMP_RS03305 0.28 -1.4 620,891 - MMP_RS03305 0.36 -1.1 620,930 + MMP_RS03305 0.46 -0.5 621,127 + -1.0 621,142 - +0.1 621,167 + -0.3 621,196 - +0.2 621,239 - -0.1 621,239 - +0.3 621,267 - -0.1 621,268 + -0.4 621,268 + +0.1 621,271 - +0.5 621,273 - +0.5 621,323 - -0.1 621,334 - -1.9 621,334 - -1.6 621,350 - -2.5 621,350 - -1.8 621,355 - -1.8 621,390 + -1.6
Or see this region's nucleotide sequence