Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03155

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03150 and MMP_RS03155 are separated by 4 nucleotidesMMP_RS03155 and MMP_RS03160 are separated by 34 nucleotidesMMP_RS03160 and MMP_RS09045 are separated by 94 nucleotides MMP_RS03150: MMP_RS03150 - phosphoglycerate mutase, at 594,165 to 595,451 _RS03150 MMP_RS03155: MMP_RS03155 - precorrin-6A reductase, at 595,456 to 596,202 _RS03155 MMP_RS03160: MMP_RS03160 - class III signal peptide-containing protein, at 596,237 to 596,920 _RS03160 MMP_RS09045: MMP_RS09045 - class III signal peptide-containing protein, at 597,015 to 597,902 _RS09045 Position (kb) 595 596 597Strain fitness (log2 ratio) -3 -2 -1 0 1at 594.466 kb on - strand, within MMP_RS03150at 594.477 kb on - strand, within MMP_RS03150at 594.478 kb on + strand, within MMP_RS03150at 594.494 kb on + strand, within MMP_RS03150at 594.494 kb on + strand, within MMP_RS03150at 594.498 kb on + strand, within MMP_RS03150at 594.498 kb on + strand, within MMP_RS03150at 594.687 kb on + strand, within MMP_RS03150at 594.890 kb on - strand, within MMP_RS03150at 595.243 kb on - strand, within MMP_RS03150at 595.277 kb on - strand, within MMP_RS03150at 595.308 kb on + strand, within MMP_RS03150at 595.324 kb on - strandat 595.325 kb on + strandat 595.340 kb on + strandat 595.375 kb on - strandat 595.378 kb on - strandat 595.379 kb on + strandat 595.381 kb on + strandat 595.435 kb on - strandat 595.435 kb on - strandat 595.435 kb on - strandat 595.436 kb on + strandat 595.444 kb on - strandat 595.445 kb on + strandat 595.517 kb on + strandat 595.533 kb on - strand, within MMP_RS03155at 595.612 kb on + strand, within MMP_RS03155at 595.618 kb on - strand, within MMP_RS03155at 595.619 kb on + strand, within MMP_RS03155at 595.642 kb on - strand, within MMP_RS03155at 595.643 kb on + strand, within MMP_RS03155at 595.643 kb on + strand, within MMP_RS03155at 595.807 kb on + strand, within MMP_RS03155at 595.808 kb on - strand, within MMP_RS03155at 595.808 kb on - strand, within MMP_RS03155at 595.809 kb on + strand, within MMP_RS03155at 595.814 kb on + strand, within MMP_RS03155at 595.840 kb on - strand, within MMP_RS03155at 595.916 kb on - strand, within MMP_RS03155at 596.146 kb on + strandat 596.161 kb on + strandat 596.226 kb on + strandat 596.229 kb on - strandat 596.230 kb on + strandat 596.271 kb on + strandat 596.271 kb on + strandat 596.273 kb on + strandat 596.334 kb on + strand, within MMP_RS03160at 596.360 kb on - strand, within MMP_RS03160at 596.528 kb on + strand, within MMP_RS03160at 596.579 kb on + strand, within MMP_RS03160at 596.614 kb on - strand, within MMP_RS03160at 596.614 kb on - strand, within MMP_RS03160at 596.635 kb on + strand, within MMP_RS03160at 596.635 kb on + strand, within MMP_RS03160at 596.639 kb on - strand, within MMP_RS03160at 596.643 kb on - strand, within MMP_RS03160at 596.643 kb on - strand, within MMP_RS03160at 596.643 kb on - strand, within MMP_RS03160at 596.643 kb on - strand, within MMP_RS03160at 596.643 kb on - strand, within MMP_RS03160at 596.643 kb on - strand, within MMP_RS03160at 596.643 kb on - strand, within MMP_RS03160at 596.644 kb on + strand, within MMP_RS03160at 596.644 kb on + strand, within MMP_RS03160at 596.644 kb on + strand, within MMP_RS03160at 596.644 kb on + strand, within MMP_RS03160at 596.644 kb on + strand, within MMP_RS03160at 596.648 kb on + strand, within MMP_RS03160at 596.666 kb on - strand, within MMP_RS03160at 596.667 kb on + strand, within MMP_RS03160at 596.667 kb on + strand, within MMP_RS03160at 596.686 kb on + strand, within MMP_RS03160at 596.741 kb on - strand, within MMP_RS03160at 596.742 kb on + strand, within MMP_RS03160at 596.801 kb on - strand, within MMP_RS03160at 596.801 kb on - strand, within MMP_RS03160at 596.802 kb on + strand, within MMP_RS03160at 596.861 kb on - strandat 596.861 kb on - strandat 596.882 kb on - strandat 596.882 kb on - strandat 596.920 kb on - strandat 596.920 kb on - strandat 596.920 kb on - strandat 596.922 kb on - strandat 596.923 kb on + strandat 596.923 kb on + strandat 596.923 kb on + strandat 596.924 kb on - strandat 596.924 kb on - strandat 596.924 kb on - strandat 596.925 kb on + strandat 596.952 kb on + strandat 596.952 kb on + strandat 596.956 kb on - strandat 596.956 kb on - strandat 596.956 kb on - strandat 596.956 kb on - strandat 596.956 kb on - strandat 596.957 kb on + strandat 596.957 kb on + strandat 596.959 kb on + strandat 596.961 kb on + strandat 596.989 kb on - strandat 596.990 kb on + strandat 597.038 kb on - strandat 597.042 kb on + strandat 597.043 kb on - strandat 597.043 kb on - strandat 597.080 kb on - strandat 597.080 kb on - strandat 597.108 kb on - strand, within MMP_RS09045at 597.115 kb on - strand, within MMP_RS09045at 597.147 kb on + strand, within MMP_RS09045at 597.197 kb on + strand, within MMP_RS09045at 597.197 kb on + strand, within MMP_RS09045

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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594,466 - MMP_RS03150 0.23 +0.4
594,477 - MMP_RS03150 0.24 -0.1
594,478 + MMP_RS03150 0.24 +0.5
594,494 + MMP_RS03150 0.26 +0.3
594,494 + MMP_RS03150 0.26 +0.3
594,498 + MMP_RS03150 0.26 +0.5
594,498 + MMP_RS03150 0.26 +0.2
594,687 + MMP_RS03150 0.41 +0.4
594,890 - MMP_RS03150 0.56 +0.4
595,243 - MMP_RS03150 0.84 +0.1
595,277 - MMP_RS03150 0.86 +0.4
595,308 + MMP_RS03150 0.89 +0.2
595,324 - -0.2
595,325 + +0.3
595,340 + +0.2
595,375 - +0.1
595,378 - -0.4
595,379 + +0.1
595,381 + -0.4
595,435 - -0.4
595,435 - +0.1
595,435 - +1.6
595,436 + -0.0
595,444 - -0.0
595,445 + +0.1
595,517 + -1.5
595,533 - MMP_RS03155 0.10 -0.5
595,612 + MMP_RS03155 0.21 -0.3
595,618 - MMP_RS03155 0.22 -1.0
595,619 + MMP_RS03155 0.22 -0.4
595,642 - MMP_RS03155 0.25 -0.6
595,643 + MMP_RS03155 0.25 -1.2
595,643 + MMP_RS03155 0.25 -0.5
595,807 + MMP_RS03155 0.47 -0.0
595,808 - MMP_RS03155 0.47 -0.3
595,808 - MMP_RS03155 0.47 -0.4
595,809 + MMP_RS03155 0.47 -1.5
595,814 + MMP_RS03155 0.48 -0.2
595,840 - MMP_RS03155 0.51 -0.8
595,916 - MMP_RS03155 0.62 -0.6
596,146 + -0.8
596,161 + -0.6
596,226 + +0.2
596,229 - -0.1
596,230 + -0.2
596,271 + -0.2
596,271 + -0.4
596,273 + -2.8
596,334 + MMP_RS03160 0.14 +0.4
596,360 - MMP_RS03160 0.18 +0.2
596,528 + MMP_RS03160 0.43 +0.1
596,579 + MMP_RS03160 0.50 +0.1
596,614 - MMP_RS03160 0.55 +0.2
596,614 - MMP_RS03160 0.55 -0.0
596,635 + MMP_RS03160 0.58 +0.4
596,635 + MMP_RS03160 0.58 -0.1
596,639 - MMP_RS03160 0.59 -0.3
596,643 - MMP_RS03160 0.59 -0.2
596,643 - MMP_RS03160 0.59 +0.4
596,643 - MMP_RS03160 0.59 +0.4
596,643 - MMP_RS03160 0.59 +0.1
596,643 - MMP_RS03160 0.59 +0.2
596,643 - MMP_RS03160 0.59 +0.0
596,643 - MMP_RS03160 0.59 +0.2
596,644 + MMP_RS03160 0.60 -0.1
596,644 + MMP_RS03160 0.60 -0.3
596,644 + MMP_RS03160 0.60 -0.9
596,644 + MMP_RS03160 0.60 +0.2
596,644 + MMP_RS03160 0.60 +0.1
596,648 + MMP_RS03160 0.60 +0.0
596,666 - MMP_RS03160 0.63 -0.0
596,667 + MMP_RS03160 0.63 +0.3
596,667 + MMP_RS03160 0.63 -0.0
596,686 + MMP_RS03160 0.66 +0.2
596,741 - MMP_RS03160 0.74 -0.4
596,742 + MMP_RS03160 0.74 +0.2
596,801 - MMP_RS03160 0.82 +0.5
596,801 - MMP_RS03160 0.82 -0.1
596,802 + MMP_RS03160 0.83 +0.5
596,861 - +0.1
596,861 - -0.4
596,882 - +0.2
596,882 - +0.3
596,920 - -0.2
596,920 - -2.3
596,920 - +0.4
596,922 - +0.5
596,923 + +1.3
596,923 + +0.1
596,923 + +0.5
596,924 - -0.2
596,924 - +0.0
596,924 - +0.9
596,925 + +0.4
596,952 + +0.3
596,952 + -0.1
596,956 - -0.2
596,956 - -0.0
596,956 - +0.5
596,956 - +0.3
596,956 - +0.2
596,957 + -0.0
596,957 + -0.0
596,959 + +0.2
596,961 + +0.2
596,989 - +0.3
596,990 + +1.2
597,038 - +0.3
597,042 + +0.4
597,043 - +0.4
597,043 - +0.6
597,080 - -0.7
597,080 - -0.1
597,108 - MMP_RS09045 0.10 +0.1
597,115 - MMP_RS09045 0.11 +0.5
597,147 + MMP_RS09045 0.15 +0.3
597,197 + MMP_RS09045 0.20 +0.1
597,197 + MMP_RS09045 0.20 -0.2

Or see this region's nucleotide sequence