Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03090 and MMP_RS03095 are separated by 116 nucleotides MMP_RS03095 and MMP_RS03100 are separated by 5 nucleotides MMP_RS03100 and MMP_RS03105 are separated by 261 nucleotides
MMP_RS03090: MMP_RS03090 - cation:proton antiporter, at 583,278 to 584,447
_RS03090
MMP_RS03095: MMP_RS03095 - diphthine synthase, at 584,564 to 585,331
_RS03095
MMP_RS03100: MMP_RS03100 - hypothetical protein, at 585,337 to 585,537
_RS03100
MMP_RS03105: MMP_RS03105 - radical SAM protein, at 585,799 to 587,331
_RS03105
Position (kb) 584
585
586 Strain fitness (log2 ratio) -1
0
1
2 at 583.775 kb on - strand, within MMP_RS03090 at 583.786 kb on + strand, within MMP_RS03090 at 583.786 kb on + strand, within MMP_RS03090 at 583.792 kb on + strand, within MMP_RS03090 at 583.843 kb on + strand, within MMP_RS03090 at 583.845 kb on - strand, within MMP_RS03090 at 583.849 kb on + strand, within MMP_RS03090 at 583.889 kb on - strand, within MMP_RS03090 at 584.135 kb on + strand, within MMP_RS03090 at 584.468 kb on - strand at 584.468 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.515 kb on + strand at 584.515 kb on + strand at 584.515 kb on + strand at 584.515 kb on + strand at 584.515 kb on + strand at 584.515 kb on + strand at 584.515 kb on + strand at 584.515 kb on + strand at 584.516 kb on - strand at 584.516 kb on - strand at 584.516 kb on - strand at 584.517 kb on + strand at 584.518 kb on - strand at 584.518 kb on - strand at 584.519 kb on + strand at 584.519 kb on + strand at 584.522 kb on + strand at 584.540 kb on + strand at 584.546 kb on - strand at 584.547 kb on + strand at 584.592 kb on + strand at 584.609 kb on + strand at 584.609 kb on + strand at 584.673 kb on - strand, within MMP_RS03095 at 584.678 kb on + strand, within MMP_RS03095 at 584.678 kb on + strand, within MMP_RS03095 at 584.725 kb on + strand, within MMP_RS03095 at 584.754 kb on + strand, within MMP_RS03095 at 585.002 kb on - strand, within MMP_RS03095 at 585.071 kb on + strand, within MMP_RS03095 at 585.206 kb on - strand, within MMP_RS03095 at 585.210 kb on + strand, within MMP_RS03095 at 585.401 kb on + strand, within MMP_RS03100 at 585.509 kb on + strand, within MMP_RS03100 at 585.512 kb on - strand, within MMP_RS03100 at 585.512 kb on - strand, within MMP_RS03100 at 585.513 kb on + strand, within MMP_RS03100 at 585.514 kb on - strand, within MMP_RS03100 at 585.551 kb on - strand at 585.553 kb on - strand at 585.553 kb on - strand at 585.553 kb on - strand at 585.554 kb on + strand at 585.572 kb on - strand at 585.573 kb on + strand at 585.587 kb on - strand at 585.592 kb on + strand at 585.627 kb on + strand at 585.675 kb on + strand at 585.739 kb on - strand at 585.739 kb on - strand at 585.741 kb on - strand at 585.741 kb on - strand at 585.756 kb on - strand at 585.757 kb on + strand at 585.757 kb on + strand at 585.763 kb on - strand at 585.763 kb on - strand at 585.764 kb on + strand at 585.764 kb on + strand at 585.766 kb on + strand at 585.766 kb on + strand at 585.824 kb on + strand at 585.936 kb on - strand at 585.979 kb on - strand, within MMP_RS03105 at 585.980 kb on + strand, within MMP_RS03105 at 585.986 kb on - strand, within MMP_RS03105 at 585.987 kb on + strand, within MMP_RS03105 at 585.990 kb on - strand, within MMP_RS03105 at 586.117 kb on + strand, within MMP_RS03105
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 583,775 - MMP_RS03090 0.42 -0.5 583,786 + MMP_RS03090 0.43 +0.2 583,786 + MMP_RS03090 0.43 +0.4 583,792 + MMP_RS03090 0.44 -0.0 583,843 + MMP_RS03090 0.48 +0.0 583,845 - MMP_RS03090 0.48 -0.2 583,849 + MMP_RS03090 0.49 -0.1 583,889 - MMP_RS03090 0.52 -0.0 584,135 + MMP_RS03090 0.73 -0.3 584,468 - -0.3 584,468 - -0.1 584,514 - +0.7 584,514 - +0.4 584,514 - -0.5 584,514 - +0.2 584,514 - -0.4 584,514 - +0.2 584,514 - +0.2 584,514 - -0.3 584,514 - -0.3 584,514 - -0.3 584,515 + +2.2 584,515 + +0.1 584,515 + +1.2 584,515 + +0.1 584,515 + -0.0 584,515 + -0.3 584,515 + -0.2 584,515 + -0.4 584,516 - +1.1 584,516 - -1.0 584,516 - -0.2 584,517 + -0.3 584,518 - -0.1 584,518 - -0.7 584,519 + +0.6 584,519 + +0.1 584,522 + +0.4 584,540 + -0.3 584,546 - -0.2 584,547 + -0.3 584,592 + -0.3 584,609 + -0.1 584,609 + -0.8 584,673 - MMP_RS03095 0.14 -0.6 584,678 + MMP_RS03095 0.15 -1.2 584,678 + MMP_RS03095 0.15 -0.9 584,725 + MMP_RS03095 0.21 -0.1 584,754 + MMP_RS03095 0.25 +0.2 585,002 - MMP_RS03095 0.57 -0.5 585,071 + MMP_RS03095 0.66 -0.5 585,206 - MMP_RS03095 0.84 -0.9 585,210 + MMP_RS03095 0.84 -1.0 585,401 + MMP_RS03100 0.32 +0.2 585,509 + MMP_RS03100 0.86 +0.4 585,512 - MMP_RS03100 0.87 -0.4 585,512 - MMP_RS03100 0.87 +0.2 585,513 + MMP_RS03100 0.88 +0.5 585,514 - MMP_RS03100 0.88 +0.1 585,551 - -0.0 585,553 - -0.3 585,553 - -0.4 585,553 - +0.2 585,554 + -0.1 585,572 - +1.0 585,573 + +0.4 585,587 - -0.0 585,592 + -0.9 585,627 + +0.6 585,675 + +0.2 585,739 - -0.2 585,739 - -0.2 585,741 - -0.0 585,741 - +0.4 585,756 - +0.1 585,757 + +0.1 585,757 + -0.4 585,763 - +0.3 585,763 - +0.0 585,764 + +0.6 585,764 + +0.1 585,766 + +0.1 585,766 + +0.2 585,824 + +0.4 585,936 - +0.2 585,979 - MMP_RS03105 0.12 +0.3 585,980 + MMP_RS03105 0.12 -0.3 585,986 - MMP_RS03105 0.12 -0.3 585,987 + MMP_RS03105 0.12 +0.1 585,990 - MMP_RS03105 0.12 +0.0 586,117 + MMP_RS03105 0.21 -0.7
Or see this region's nucleotide sequence