Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03005 and MMP_RS03010 are separated by 73 nucleotides MMP_RS03010 and MMP_RS03015 are separated by 8 nucleotides MMP_RS03015 and MMP_RS03020 are separated by 131 nucleotides MMP_RS03020 and MMP_RS03025 are separated by 110 nucleotides
MMP_RS03005: MMP_RS03005 - S-layer protein, at 568,527 to 570,113
_RS03005
MMP_RS03010: MMP_RS03010 - cupin domain-containing protein, at 570,187 to 570,687
_RS03010
MMP_RS03015: MMP_RS03015 - GTP 3' 8-cyclase MoaA, at 570,696 to 571,589
_RS03015
MMP_RS03020: MMP_RS03020 - peptidylprolyl isomerase, at 571,721 to 572,407
_RS03020
MMP_RS03025: MMP_RS03025 - molybdenum cofactor guanylyltransferase, at 572,518 to 573,162
_RS03025
Position (kb) 570
571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 569.731 kb on - strand, within MMP_RS03005 at 569.731 kb on - strand, within MMP_RS03005 at 570.001 kb on + strand at 570.060 kb on - strand at 570.061 kb on + strand at 570.064 kb on + strand at 570.064 kb on + strand at 570.068 kb on - strand at 570.078 kb on - strand at 570.079 kb on + strand at 570.083 kb on - strand at 570.083 kb on - strand at 570.113 kb on - strand at 570.135 kb on - strand at 570.139 kb on + strand at 570.139 kb on + strand at 570.142 kb on + strand at 570.164 kb on - strand at 570.361 kb on + strand, within MMP_RS03010 at 570.410 kb on + strand, within MMP_RS03010 at 570.414 kb on - strand, within MMP_RS03010 at 570.415 kb on + strand, within MMP_RS03010 at 570.416 kb on - strand, within MMP_RS03010 at 570.436 kb on + strand, within MMP_RS03010 at 570.439 kb on + strand, within MMP_RS03010 at 570.445 kb on + strand, within MMP_RS03010 at 570.448 kb on - strand, within MMP_RS03010 at 570.449 kb on + strand, within MMP_RS03010 at 570.449 kb on + strand, within MMP_RS03010 at 570.468 kb on + strand, within MMP_RS03010 at 570.524 kb on + strand, within MMP_RS03010 at 570.534 kb on + strand, within MMP_RS03010 at 570.544 kb on + strand, within MMP_RS03010 at 570.548 kb on - strand, within MMP_RS03010 at 570.567 kb on + strand, within MMP_RS03010 at 570.567 kb on + strand, within MMP_RS03010 at 570.577 kb on - strand, within MMP_RS03010 at 570.820 kb on + strand, within MMP_RS03015 at 570.836 kb on - strand, within MMP_RS03015 at 570.915 kb on + strand, within MMP_RS03015 at 570.950 kb on - strand, within MMP_RS03015 at 570.951 kb on + strand, within MMP_RS03015 at 570.954 kb on - strand, within MMP_RS03015 at 570.954 kb on - strand, within MMP_RS03015 at 570.954 kb on - strand, within MMP_RS03015 at 570.955 kb on + strand, within MMP_RS03015 at 570.955 kb on + strand, within MMP_RS03015 at 570.955 kb on + strand, within MMP_RS03015 at 571.002 kb on - strand, within MMP_RS03015 at 571.003 kb on + strand, within MMP_RS03015 at 571.239 kb on + strand, within MMP_RS03015 at 571.302 kb on - strand, within MMP_RS03015 at 571.354 kb on - strand, within MMP_RS03015 at 571.668 kb on + strand at 571.709 kb on - strand at 571.723 kb on + strand at 571.863 kb on + strand, within MMP_RS03020 at 571.863 kb on + strand, within MMP_RS03020 at 571.863 kb on + strand, within MMP_RS03020 at 571.868 kb on - strand, within MMP_RS03020 at 571.941 kb on + strand, within MMP_RS03020 at 571.964 kb on - strand, within MMP_RS03020 at 572.054 kb on - strand, within MMP_RS03020 at 572.430 kb on - strand at 572.461 kb on - strand at 572.461 kb on - strand at 572.479 kb on - strand at 572.479 kb on - strand at 572.499 kb on + strand at 572.518 kb on + strand at 572.532 kb on - strand at 572.533 kb on + strand at 572.538 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 569,731 - MMP_RS03005 0.76 +0.6 569,731 - MMP_RS03005 0.76 -0.1 570,001 + +0.1 570,060 - +0.1 570,061 + +0.2 570,064 + -0.0 570,064 + -0.1 570,068 - -0.3 570,078 - +0.4 570,079 + -0.3 570,083 - +0.9 570,083 - -0.1 570,113 - +0.3 570,135 - -0.1 570,139 + +0.2 570,139 + +0.3 570,142 + +0.0 570,164 - +0.0 570,361 + MMP_RS03010 0.35 +0.9 570,410 + MMP_RS03010 0.45 +0.3 570,414 - MMP_RS03010 0.45 +0.1 570,415 + MMP_RS03010 0.46 -0.1 570,416 - MMP_RS03010 0.46 +0.3 570,436 + MMP_RS03010 0.50 -0.1 570,439 + MMP_RS03010 0.50 +0.1 570,445 + MMP_RS03010 0.51 -0.1 570,448 - MMP_RS03010 0.52 -0.2 570,449 + MMP_RS03010 0.52 +0.1 570,449 + MMP_RS03010 0.52 +0.2 570,468 + MMP_RS03010 0.56 +0.1 570,524 + MMP_RS03010 0.67 -0.3 570,534 + MMP_RS03010 0.69 +1.0 570,544 + MMP_RS03010 0.71 -0.1 570,548 - MMP_RS03010 0.72 +0.0 570,567 + MMP_RS03010 0.76 +0.2 570,567 + MMP_RS03010 0.76 +0.3 570,577 - MMP_RS03010 0.78 -0.2 570,820 + MMP_RS03015 0.14 -2.4 570,836 - MMP_RS03015 0.16 -1.3 570,915 + MMP_RS03015 0.24 -2.2 570,950 - MMP_RS03015 0.28 -2.6 570,951 + MMP_RS03015 0.29 -2.4 570,954 - MMP_RS03015 0.29 -2.0 570,954 - MMP_RS03015 0.29 -1.8 570,954 - MMP_RS03015 0.29 -1.5 570,955 + MMP_RS03015 0.29 -2.7 570,955 + MMP_RS03015 0.29 -2.4 570,955 + MMP_RS03015 0.29 -3.0 571,002 - MMP_RS03015 0.34 -2.6 571,003 + MMP_RS03015 0.34 -2.6 571,239 + MMP_RS03015 0.61 -2.9 571,302 - MMP_RS03015 0.68 -2.3 571,354 - MMP_RS03015 0.74 -2.3 571,668 + -0.1 571,709 - -0.2 571,723 + -0.1 571,863 + MMP_RS03020 0.21 -0.2 571,863 + MMP_RS03020 0.21 -0.4 571,863 + MMP_RS03020 0.21 +0.1 571,868 - MMP_RS03020 0.21 +0.4 571,941 + MMP_RS03020 0.32 +0.1 571,964 - MMP_RS03020 0.35 -0.3 572,054 - MMP_RS03020 0.48 -0.2 572,430 - -0.5 572,461 - +0.1 572,461 - +0.1 572,479 - -0.8 572,479 - -0.7 572,499 + -0.5 572,518 + -2.3 572,532 - -1.0 572,533 + -2.5 572,538 + -1.6
Or see this region's nucleotide sequence