Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02895 and MMP_RS02900 are separated by 75 nucleotides MMP_RS02900 and MMP_RS02905 are separated by 9 nucleotides MMP_RS02905 and MMP_RS02910 are separated by 170 nucleotides
MMP_RS02895: MMP_RS02895 - DHH family phosphoesterase, at 551,491 to 552,786
_RS02895
MMP_RS02900: MMP_RS02900 - imidazoleglycerol-phosphate dehydratase HisB, at 552,862 to 553,434
_RS02900
MMP_RS02905: MMP_RS02905 - 2-thiouracil desulfurase family protein, at 553,444 to 553,992
_RS02905
MMP_RS02910: MMP_RS02910 - ABC transporter substrate-binding protein, at 554,163 to 554,957
_RS02910
Position (kb) 552
553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 552.050 kb on + strand, within MMP_RS02895 at 552.092 kb on - strand, within MMP_RS02895 at 552.113 kb on + strand, within MMP_RS02895 at 552.131 kb on + strand, within MMP_RS02895 at 552.187 kb on + strand, within MMP_RS02895 at 552.189 kb on + strand, within MMP_RS02895 at 552.300 kb on - strand, within MMP_RS02895 at 552.336 kb on + strand, within MMP_RS02895 at 552.422 kb on - strand, within MMP_RS02895 at 552.425 kb on + strand, within MMP_RS02895 at 552.433 kb on - strand, within MMP_RS02895 at 552.530 kb on - strand, within MMP_RS02895 at 552.828 kb on + strand at 552.829 kb on - strand at 552.829 kb on - strand at 552.830 kb on + strand at 552.832 kb on - strand at 552.833 kb on + strand at 552.833 kb on + strand at 552.834 kb on - strand at 552.918 kb on + strand at 553.313 kb on - strand, within MMP_RS02900 at 553.530 kb on - strand, within MMP_RS02905 at 553.717 kb on + strand, within MMP_RS02905 at 553.737 kb on + strand, within MMP_RS02905 at 553.746 kb on + strand, within MMP_RS02905 at 554.018 kb on - strand at 554.055 kb on - strand at 554.066 kb on - strand at 554.118 kb on - strand at 554.171 kb on - strand at 554.252 kb on - strand, within MMP_RS02910 at 554.294 kb on + strand, within MMP_RS02910
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 552,050 + MMP_RS02895 0.43 +0.1 552,092 - MMP_RS02895 0.46 +0.4 552,113 + MMP_RS02895 0.48 +0.2 552,131 + MMP_RS02895 0.49 -0.2 552,187 + MMP_RS02895 0.54 +0.2 552,189 + MMP_RS02895 0.54 +0.4 552,300 - MMP_RS02895 0.62 -0.5 552,336 + MMP_RS02895 0.65 +0.0 552,422 - MMP_RS02895 0.72 +0.5 552,425 + MMP_RS02895 0.72 +0.3 552,433 - MMP_RS02895 0.73 -1.2 552,530 - MMP_RS02895 0.80 -0.1 552,828 + -0.2 552,829 - -2.5 552,829 - -1.5 552,830 + +0.3 552,832 - -3.0 552,833 + -0.0 552,833 + -0.1 552,834 - -2.2 552,918 + -0.6 553,313 - MMP_RS02900 0.79 -1.2 553,530 - MMP_RS02905 0.16 +0.1 553,717 + MMP_RS02905 0.50 +0.2 553,737 + MMP_RS02905 0.53 +0.5 553,746 + MMP_RS02905 0.55 -0.2 554,018 - +1.3 554,055 - +0.4 554,066 - +0.1 554,118 - +0.4 554,171 - -0.4 554,252 - MMP_RS02910 0.11 +0.0 554,294 + MMP_RS02910 0.16 +0.1
Or see this region's nucleotide sequence