Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02885

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02880 and MMP_RS02885 are separated by 26 nucleotidesMMP_RS02885 and MMP_RS02890 are separated by 216 nucleotidesMMP_RS02890 and MMP_RS02895 are separated by 61 nucleotides MMP_RS02880: MMP_RS02880 - AmmeMemoRadiSam system radical SAM enzyme, at 547,714 to 548,724 _RS02880 MMP_RS02885: MMP_RS02885 - molybdopterin biosynthesis protein, at 548,751 to 550,601 _RS02885 MMP_RS02890: MMP_RS02890 - TIGR00296 family protein, at 550,818 to 551,429 _RS02890 MMP_RS02895: MMP_RS02895 - DHH family phosphoesterase, at 551,491 to 552,786 _RS02895 Position (kb) 548 549 550 551Strain fitness (log2 ratio) -2 -1 0 1at 547.856 kb on - strand, within MMP_RS02880at 547.920 kb on - strand, within MMP_RS02880at 548.098 kb on - strand, within MMP_RS02880at 548.099 kb on + strand, within MMP_RS02880at 548.245 kb on + strand, within MMP_RS02880at 548.246 kb on - strand, within MMP_RS02880at 548.471 kb on + strand, within MMP_RS02880at 548.501 kb on - strand, within MMP_RS02880at 548.501 kb on - strand, within MMP_RS02880at 548.501 kb on - strand, within MMP_RS02880at 548.502 kb on + strand, within MMP_RS02880at 548.555 kb on - strand, within MMP_RS02880at 548.556 kb on + strand, within MMP_RS02880at 548.556 kb on + strand, within MMP_RS02880at 548.558 kb on + strand, within MMP_RS02880at 548.596 kb on - strand, within MMP_RS02880at 548.617 kb on + strand, within MMP_RS02880at 548.665 kb on + strandat 548.718 kb on + strandat 548.718 kb on + strandat 548.737 kb on - strandat 548.738 kb on + strandat 548.757 kb on - strandat 548.758 kb on + strandat 548.761 kb on - strandat 548.762 kb on + strandat 548.762 kb on + strandat 548.786 kb on - strandat 548.876 kb on + strandat 549.091 kb on - strand, within MMP_RS02885at 549.188 kb on + strand, within MMP_RS02885at 549.203 kb on - strand, within MMP_RS02885at 549.204 kb on + strand, within MMP_RS02885at 549.204 kb on + strand, within MMP_RS02885at 549.206 kb on + strand, within MMP_RS02885at 549.224 kb on - strand, within MMP_RS02885at 549.308 kb on + strand, within MMP_RS02885at 549.328 kb on - strand, within MMP_RS02885at 549.329 kb on + strand, within MMP_RS02885at 549.357 kb on + strand, within MMP_RS02885at 549.374 kb on - strand, within MMP_RS02885at 549.689 kb on + strand, within MMP_RS02885at 549.692 kb on + strand, within MMP_RS02885at 549.738 kb on - strand, within MMP_RS02885at 549.738 kb on - strand, within MMP_RS02885at 549.738 kb on - strand, within MMP_RS02885at 549.739 kb on + strand, within MMP_RS02885at 549.740 kb on - strand, within MMP_RS02885at 549.740 kb on - strand, within MMP_RS02885at 549.740 kb on - strand, within MMP_RS02885at 549.741 kb on + strand, within MMP_RS02885at 549.741 kb on + strand, within MMP_RS02885at 549.741 kb on + strand, within MMP_RS02885at 549.849 kb on + strand, within MMP_RS02885at 549.853 kb on + strand, within MMP_RS02885at 549.864 kb on - strand, within MMP_RS02885at 549.871 kb on - strand, within MMP_RS02885at 549.872 kb on + strand, within MMP_RS02885at 549.872 kb on + strand, within MMP_RS02885at 549.935 kb on - strand, within MMP_RS02885at 550.018 kb on - strand, within MMP_RS02885at 550.091 kb on + strand, within MMP_RS02885at 550.115 kb on + strand, within MMP_RS02885at 550.153 kb on - strand, within MMP_RS02885at 550.422 kb on + strandat 550.585 kb on - strandat 550.651 kb on - strandat 550.713 kb on + strandat 550.740 kb on + strandat 550.858 kb on + strandat 550.874 kb on + strandat 550.874 kb on + strandat 550.946 kb on + strand, within MMP_RS02890at 550.991 kb on - strand, within MMP_RS02890at 551.113 kb on - strand, within MMP_RS02890at 551.113 kb on - strand, within MMP_RS02890at 551.114 kb on + strand, within MMP_RS02890at 551.170 kb on + strand, within MMP_RS02890at 551.204 kb on - strand, within MMP_RS02890at 551.237 kb on + strand, within MMP_RS02890at 551.261 kb on - strand, within MMP_RS02890at 551.343 kb on + strand, within MMP_RS02890at 551.398 kb on - strandat 551.415 kb on - strandat 551.466 kb on + strandat 551.498 kb on - strandat 551.520 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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547,856 - MMP_RS02880 0.14 -0.4
547,920 - MMP_RS02880 0.20 +0.1
548,098 - MMP_RS02880 0.38 -0.1
548,099 + MMP_RS02880 0.38 -0.1
548,245 + MMP_RS02880 0.53 +0.0
548,246 - MMP_RS02880 0.53 -0.5
548,471 + MMP_RS02880 0.75 -0.0
548,501 - MMP_RS02880 0.78 -0.3
548,501 - MMP_RS02880 0.78 +0.6
548,501 - MMP_RS02880 0.78 +0.1
548,502 + MMP_RS02880 0.78 +0.4
548,555 - MMP_RS02880 0.83 -0.3
548,556 + MMP_RS02880 0.83 +0.1
548,556 + MMP_RS02880 0.83 -0.2
548,558 + MMP_RS02880 0.83 -0.6
548,596 - MMP_RS02880 0.87 -0.1
548,617 + MMP_RS02880 0.89 -0.1
548,665 + -0.3
548,718 + +0.1
548,718 + +0.3
548,737 - -0.5
548,738 + +0.2
548,757 - -1.1
548,758 + -0.9
548,761 - -1.4
548,762 + -1.0
548,762 + -0.3
548,786 - -1.3
548,876 + -1.3
549,091 - MMP_RS02885 0.18 -1.5
549,188 + MMP_RS02885 0.24 -0.9
549,203 - MMP_RS02885 0.24 -0.8
549,204 + MMP_RS02885 0.24 -1.1
549,204 + MMP_RS02885 0.24 -0.6
549,206 + MMP_RS02885 0.25 -1.1
549,224 - MMP_RS02885 0.26 -0.5
549,308 + MMP_RS02885 0.30 -0.3
549,328 - MMP_RS02885 0.31 -1.0
549,329 + MMP_RS02885 0.31 -0.4
549,357 + MMP_RS02885 0.33 -0.9
549,374 - MMP_RS02885 0.34 -0.9
549,689 + MMP_RS02885 0.51 -2.0
549,692 + MMP_RS02885 0.51 -1.2
549,738 - MMP_RS02885 0.53 -0.7
549,738 - MMP_RS02885 0.53 -0.7
549,738 - MMP_RS02885 0.53 -0.9
549,739 + MMP_RS02885 0.53 -1.1
549,740 - MMP_RS02885 0.53 -1.1
549,740 - MMP_RS02885 0.53 -1.4
549,740 - MMP_RS02885 0.53 -0.6
549,741 + MMP_RS02885 0.53 -1.1
549,741 + MMP_RS02885 0.53 -0.9
549,741 + MMP_RS02885 0.53 -0.7
549,849 + MMP_RS02885 0.59 -0.6
549,853 + MMP_RS02885 0.60 -1.0
549,864 - MMP_RS02885 0.60 -0.5
549,871 - MMP_RS02885 0.61 -0.5
549,872 + MMP_RS02885 0.61 -1.2
549,872 + MMP_RS02885 0.61 -0.8
549,935 - MMP_RS02885 0.64 -1.2
550,018 - MMP_RS02885 0.68 +0.4
550,091 + MMP_RS02885 0.72 -1.1
550,115 + MMP_RS02885 0.74 -0.9
550,153 - MMP_RS02885 0.76 -1.1
550,422 + -0.9
550,585 - +0.2
550,651 - -0.6
550,713 + +0.0
550,740 + +0.2
550,858 + -0.2
550,874 + +0.3
550,874 + -0.0
550,946 + MMP_RS02890 0.21 +0.7
550,991 - MMP_RS02890 0.28 +0.3
551,113 - MMP_RS02890 0.48 -0.2
551,113 - MMP_RS02890 0.48 -0.4
551,114 + MMP_RS02890 0.48 +0.3
551,170 + MMP_RS02890 0.58 -0.3
551,204 - MMP_RS02890 0.63 +0.5
551,237 + MMP_RS02890 0.68 +0.5
551,261 - MMP_RS02890 0.72 -0.0
551,343 + MMP_RS02890 0.86 -0.4
551,398 - +0.7
551,415 - -0.3
551,466 + -0.0
551,498 - +0.0
551,520 - +0.1

Or see this region's nucleotide sequence