Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02275 and MMP_RS02280 are separated by 259 nucleotides MMP_RS02280 and MMP_RS02285 are separated by 54 nucleotides MMP_RS02285 and MMP_RS02290 are separated by 62 nucleotides
MMP_RS02275: MMP_RS02275 - Ni-sirohydrochlorin a c-diamide reductive cyclase catalytic subunit, at 429,261 to 430,361
_RS02275
MMP_RS02280: MMP_RS02280 - DUF211 domain-containing protein, at 430,621 to 430,914
_RS02280
MMP_RS02285: MMP_RS02285 - RNase P subunit p30 family protein, at 430,969 to 431,667
_RS02285
MMP_RS02290: MMP_RS02290 - MBL fold metallo-hydrolase, at 431,730 to 433,031
_RS02290
Position (kb) 430
431 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 429.829 kb on - strand at 430.009 kb on + strand at 430.018 kb on + strand at 430.021 kb on + strand at 430.155 kb on - strand at 430.378 kb on + strand at 430.405 kb on - strand at 430.413 kb on + strand at 430.458 kb on + strand at 430.459 kb on - strand at 430.485 kb on + strand at 430.506 kb on - strand at 430.506 kb on - strand at 430.509 kb on + strand at 430.510 kb on - strand at 430.511 kb on + strand at 430.511 kb on + strand at 430.516 kb on + strand at 430.530 kb on + strand at 430.530 kb on + strand at 430.531 kb on - strand at 430.532 kb on + strand at 430.532 kb on + strand at 430.532 kb on + strand at 430.535 kb on - strand at 430.537 kb on - strand at 430.542 kb on + strand at 430.542 kb on + strand at 430.544 kb on - strand at 430.545 kb on + strand at 430.602 kb on - strand at 430.602 kb on - strand at 430.603 kb on + strand at 430.819 kb on + strand, within MMP_RS02280 at 430.906 kb on + strand at 430.906 kb on + strand at 430.906 kb on + strand at 430.909 kb on - strand at 430.938 kb on - strand at 430.941 kb on - strand at 431.138 kb on + strand at 431.391 kb on + strand at 431.409 kb on - strand at 431.500 kb on + strand at 431.504 kb on + strand at 431.755 kb on + strand at 431.832 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 429,829 - -1.4 430,009 + -1.4 430,018 + -1.5 430,021 + -1.6 430,155 - -1.9 430,378 + -0.9 430,405 - -0.0 430,413 + +0.1 430,458 + -0.2 430,459 - -0.6 430,485 + -0.6 430,506 - -0.2 430,506 - +0.1 430,509 + -0.3 430,510 - +0.0 430,511 + +0.4 430,511 + +0.1 430,516 + +0.0 430,530 + -0.2 430,530 + +0.5 430,531 - -0.3 430,532 + -0.5 430,532 + +0.2 430,532 + -0.5 430,535 - -0.2 430,537 - +0.1 430,542 + -2.0 430,542 + -2.4 430,544 - -0.1 430,545 + -2.1 430,602 - -1.4 430,602 - -0.1 430,603 + -1.0 430,819 + MMP_RS02280 0.67 -2.9 430,906 + -1.6 430,906 + -1.4 430,906 + -2.0 430,909 - -2.0 430,938 - -1.3 430,941 - -2.2 431,138 + -1.3 431,391 + -1.8 431,409 - -1.1 431,500 + -1.4 431,504 + -1.0 431,755 + -0.2 431,832 - +0.5
Or see this region's nucleotide sequence