Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02010

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02005 and MMP_RS02010 are separated by 5 nucleotidesMMP_RS02010 and MMP_RS02015 are separated by 28 nucleotides MMP_RS02005: MMP_RS02005 - RNA ligase, at 373,010 to 374,194 _RS02005 MMP_RS02010: MMP_RS02010 - PHP domain-containing protein, at 374,200 to 374,844 _RS02010 MMP_RS02015: MMP_RS02015 - amidohydrolase, at 374,873 to 376,156 _RS02015 Position (kb) 374 375Strain fitness (log2 ratio) -3 -2 -1 0 1at 373.421 kb on + strand, within MMP_RS02005at 373.421 kb on + strand, within MMP_RS02005at 373.426 kb on - strand, within MMP_RS02005at 373.427 kb on + strand, within MMP_RS02005at 373.517 kb on - strand, within MMP_RS02005at 373.535 kb on + strand, within MMP_RS02005at 373.574 kb on + strand, within MMP_RS02005at 373.574 kb on + strand, within MMP_RS02005at 373.575 kb on - strand, within MMP_RS02005at 373.692 kb on - strand, within MMP_RS02005at 373.865 kb on - strand, within MMP_RS02005at 374.061 kb on - strand, within MMP_RS02005at 374.141 kb on - strandat 374.181 kb on - strandat 374.472 kb on - strand, within MMP_RS02010at 374.474 kb on - strand, within MMP_RS02010at 374.475 kb on + strand, within MMP_RS02010at 374.476 kb on - strand, within MMP_RS02010at 374.477 kb on + strand, within MMP_RS02010at 374.485 kb on - strand, within MMP_RS02010at 374.487 kb on - strand, within MMP_RS02010at 374.492 kb on + strand, within MMP_RS02010at 374.532 kb on - strand, within MMP_RS02010at 374.576 kb on - strand, within MMP_RS02010at 374.577 kb on + strand, within MMP_RS02010at 374.599 kb on - strand, within MMP_RS02010at 374.599 kb on - strand, within MMP_RS02010at 374.698 kb on - strand, within MMP_RS02010at 374.869 kb on - strandat 374.875 kb on + strandat 374.902 kb on - strandat 374.914 kb on - strandat 374.918 kb on + strandat 374.921 kb on - strandat 374.943 kb on - strandat 374.963 kb on - strandat 374.965 kb on - strandat 374.982 kb on + strandat 375.019 kb on - strand, within MMP_RS02015at 375.038 kb on + strand, within MMP_RS02015at 375.074 kb on - strand, within MMP_RS02015at 375.077 kb on + strand, within MMP_RS02015at 375.479 kb on - strand, within MMP_RS02015at 375.480 kb on + strand, within MMP_RS02015at 375.518 kb on - strand, within MMP_RS02015at 375.626 kb on + strand, within MMP_RS02015at 375.665 kb on - strand, within MMP_RS02015at 375.667 kb on - strand, within MMP_RS02015at 375.835 kb on + strand, within MMP_RS02015

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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373,421 + MMP_RS02005 0.35 +0.1
373,421 + MMP_RS02005 0.35 +0.2
373,426 - MMP_RS02005 0.35 -0.2
373,427 + MMP_RS02005 0.35 -0.3
373,517 - MMP_RS02005 0.43 +0.0
373,535 + MMP_RS02005 0.44 +0.2
373,574 + MMP_RS02005 0.48 +0.6
373,574 + MMP_RS02005 0.48 +0.3
373,575 - MMP_RS02005 0.48 +0.1
373,692 - MMP_RS02005 0.58 -0.2
373,865 - MMP_RS02005 0.72 -0.5
374,061 - MMP_RS02005 0.89 +0.4
374,141 - +0.3
374,181 - -0.3
374,472 - MMP_RS02010 0.42 -1.8
374,474 - MMP_RS02010 0.42 -2.6
374,475 + MMP_RS02010 0.43 -0.6
374,476 - MMP_RS02010 0.43 -2.4
374,477 + MMP_RS02010 0.43 -3.2
374,485 - MMP_RS02010 0.44 -3.3
374,487 - MMP_RS02010 0.44 -1.8
374,492 + MMP_RS02010 0.45 -2.9
374,532 - MMP_RS02010 0.51 -2.5
374,576 - MMP_RS02010 0.58 -2.3
374,577 + MMP_RS02010 0.58 -2.1
374,599 - MMP_RS02010 0.62 -1.8
374,599 - MMP_RS02010 0.62 -2.5
374,698 - MMP_RS02010 0.77 -2.3
374,869 - -0.4
374,875 + -1.0
374,902 - -1.0
374,914 - +0.0
374,918 + -0.5
374,921 - +0.1
374,943 - +0.7
374,963 - -0.4
374,965 - +0.2
374,982 + +0.8
375,019 - MMP_RS02015 0.11 +0.1
375,038 + MMP_RS02015 0.13 -1.8
375,074 - MMP_RS02015 0.16 -0.2
375,077 + MMP_RS02015 0.16 +0.2
375,479 - MMP_RS02015 0.47 -0.3
375,480 + MMP_RS02015 0.47 -0.2
375,518 - MMP_RS02015 0.50 +0.2
375,626 + MMP_RS02015 0.59 +0.1
375,665 - MMP_RS02015 0.62 +0.3
375,667 - MMP_RS02015 0.62 +0.0
375,835 + MMP_RS02015 0.75 -0.1

Or see this region's nucleotide sequence