Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01785 and MMP_RS01790 are separated by 47 nucleotides MMP_RS01790 and MMP_RS01795 are separated by 16 nucleotides MMP_RS01795 and MMP_RS01800 are separated by 28 nucleotides MMP_RS01800 and MMP_RS01805 are separated by 118 nucleotides MMP_RS01805 and MMP_RS01810 are separated by 110 nucleotides MMP_RS01810 and MMP_RS01815 are separated by 27 nucleotides
MMP_RS01785: MMP_RS01785 - hypothetical protein, at 332,330 to 332,743
_RS01785
MMP_RS01790: MMP_RS01790 - restriction endonuclease, at 332,791 to 333,198
_RS01790
MMP_RS01795: MMP_RS01795 - methanogenesis marker 6 protein, at 333,215 to 333,661
_RS01795
MMP_RS01800: MMP_RS01800 - TIGR00303 family protein, at 333,690 to 334,742
_RS01800
MMP_RS01805: MMP_RS01805 - NUDIX hydrolase, at 334,861 to 335,376
_RS01805
MMP_RS01810: MMP_RS01810 - tRNA-Arg, at 335,487 to 335,564
_RS01810
MMP_RS01815: MMP_RS01815 - tRNA-Glu, at 335,592 to 335,666
_RS01815
Position (kb) 333
334
335 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 332.696 kb on - strand, within MMP_RS01785 at 332.696 kb on - strand, within MMP_RS01785 at 332.697 kb on + strand, within MMP_RS01785 at 332.697 kb on + strand, within MMP_RS01785 at 332.700 kb on - strand, within MMP_RS01785 at 332.700 kb on - strand, within MMP_RS01785 at 332.701 kb on + strand, within MMP_RS01785 at 332.727 kb on - strand at 332.731 kb on - strand at 332.779 kb on + strand at 332.779 kb on + strand at 332.788 kb on + strand at 332.789 kb on - strand at 332.789 kb on - strand at 332.790 kb on + strand at 332.790 kb on + strand at 332.792 kb on - strand at 333.021 kb on + strand, within MMP_RS01790 at 333.023 kb on - strand, within MMP_RS01790 at 333.023 kb on - strand, within MMP_RS01790 at 333.024 kb on + strand, within MMP_RS01790 at 333.045 kb on - strand, within MMP_RS01790 at 333.089 kb on + strand, within MMP_RS01790 at 333.154 kb on - strand, within MMP_RS01790 at 333.189 kb on - strand at 333.213 kb on + strand at 333.461 kb on + strand, within MMP_RS01795 at 333.467 kb on + strand, within MMP_RS01795 at 333.500 kb on - strand, within MMP_RS01795 at 333.672 kb on - strand at 333.736 kb on - strand at 333.829 kb on - strand, within MMP_RS01800 at 334.047 kb on - strand, within MMP_RS01800 at 334.048 kb on + strand, within MMP_RS01800 at 334.059 kb on + strand, within MMP_RS01800 at 334.222 kb on + strand, within MMP_RS01800 at 334.537 kb on + strand, within MMP_RS01800 at 334.569 kb on - strand, within MMP_RS01800 at 334.572 kb on + strand, within MMP_RS01800 at 334.576 kb on + strand, within MMP_RS01800 at 334.603 kb on - strand, within MMP_RS01800 at 334.666 kb on + strand at 334.668 kb on + strand at 334.680 kb on - strand at 334.734 kb on + strand at 334.771 kb on + strand at 334.774 kb on - strand at 334.778 kb on + strand at 334.870 kb on + strand at 334.874 kb on - strand at 335.014 kb on - strand, within MMP_RS01805 at 335.056 kb on - strand, within MMP_RS01805 at 335.292 kb on - strand, within MMP_RS01805 at 335.293 kb on + strand, within MMP_RS01805 at 335.306 kb on - strand, within MMP_RS01805 at 335.362 kb on - strand at 335.363 kb on + strand at 335.364 kb on - strand at 335.364 kb on - strand at 335.364 kb on - strand at 335.366 kb on - strand at 335.398 kb on + strand at 335.458 kb on - strand at 335.721 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 332,696 - MMP_RS01785 0.88 -0.4 332,696 - MMP_RS01785 0.88 +0.1 332,697 + MMP_RS01785 0.89 +0.3 332,697 + MMP_RS01785 0.89 +0.4 332,700 - MMP_RS01785 0.89 +0.2 332,700 - MMP_RS01785 0.89 -0.0 332,701 + MMP_RS01785 0.90 -0.1 332,727 - +0.1 332,731 - +0.6 332,779 + +0.1 332,779 + +0.3 332,788 + -0.6 332,789 - +0.2 332,789 - +0.3 332,790 + +0.5 332,790 + +0.2 332,792 - +1.0 333,021 + MMP_RS01790 0.56 +0.2 333,023 - MMP_RS01790 0.57 +0.4 333,023 - MMP_RS01790 0.57 -0.3 333,024 + MMP_RS01790 0.57 -0.0 333,045 - MMP_RS01790 0.62 -0.6 333,089 + MMP_RS01790 0.73 +0.2 333,154 - MMP_RS01790 0.89 -0.2 333,189 - +0.3 333,213 + +0.3 333,461 + MMP_RS01795 0.55 -1.2 333,467 + MMP_RS01795 0.56 -0.4 333,500 - MMP_RS01795 0.64 -0.5 333,672 - -0.5 333,736 - +0.6 333,829 - MMP_RS01800 0.13 -1.8 334,047 - MMP_RS01800 0.34 -1.3 334,048 + MMP_RS01800 0.34 -0.6 334,059 + MMP_RS01800 0.35 -0.2 334,222 + MMP_RS01800 0.51 +0.9 334,537 + MMP_RS01800 0.80 -1.0 334,569 - MMP_RS01800 0.83 -1.9 334,572 + MMP_RS01800 0.84 -0.4 334,576 + MMP_RS01800 0.84 -1.8 334,603 - MMP_RS01800 0.87 -1.0 334,666 + -0.2 334,668 + -3.6 334,680 - -2.9 334,734 + -2.0 334,771 + +0.0 334,774 - +0.3 334,778 + +0.2 334,870 + +0.1 334,874 - +0.8 335,014 - MMP_RS01805 0.30 -0.2 335,056 - MMP_RS01805 0.38 -0.1 335,292 - MMP_RS01805 0.84 -0.2 335,293 + MMP_RS01805 0.84 -0.7 335,306 - MMP_RS01805 0.86 +1.0 335,362 - +0.2 335,363 + +0.3 335,364 - +0.0 335,364 - +0.5 335,364 - +0.9 335,366 - +0.0 335,398 + +0.2 335,458 - -2.4 335,721 - -0.0
Or see this region's nucleotide sequence