Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01655 and MMP_RS01660 are separated by 124 nucleotides MMP_RS01660 and MMP_RS01665 are separated by 54 nucleotides MMP_RS01665 and MMP_RS01670 are separated by 20 nucleotides MMP_RS01670 and MMP_RS01675 are separated by 8 nucleotides
MMP_RS01655: MMP_RS01655 - DsrE family protein, at 306,194 to 306,538
_RS01655
MMP_RS01660: MMP_RS01660 - hypothetical protein, at 306,663 to 307,247
_RS01660
MMP_RS01665: MMP_RS01665 - DUF2111 domain-containing protein, at 307,302 to 307,685
_RS01665
MMP_RS01670: MMP_RS01670 - methanogenesis marker 5 protein, at 307,706 to 308,146
_RS01670
MMP_RS01675: MMP_RS01675 - hypothetical protein, at 308,155 to 308,610
_RS01675
Position (kb) 307
308 Strain fitness (log2 ratio) -2
-1
0
1 at 306.323 kb on - strand, within MMP_RS01655 at 306.365 kb on - strand, within MMP_RS01655 at 306.499 kb on + strand, within MMP_RS01655 at 306.521 kb on + strand at 306.545 kb on - strand at 306.558 kb on - strand at 306.590 kb on + strand at 306.603 kb on - strand at 306.617 kb on - strand at 306.622 kb on - strand at 306.636 kb on - strand at 306.636 kb on - strand at 306.641 kb on - strand at 306.647 kb on + strand at 306.663 kb on + strand at 306.663 kb on + strand at 306.744 kb on - strand, within MMP_RS01660 at 306.745 kb on + strand, within MMP_RS01660 at 306.756 kb on + strand, within MMP_RS01660 at 306.999 kb on + strand, within MMP_RS01660 at 307.249 kb on - strand at 307.263 kb on + strand at 307.272 kb on - strand at 307.272 kb on - strand at 307.273 kb on + strand at 307.273 kb on + strand at 307.276 kb on - strand at 307.276 kb on - strand at 307.276 kb on - strand at 307.276 kb on - strand at 307.276 kb on - strand at 307.276 kb on - strand at 307.277 kb on + strand at 307.277 kb on + strand at 307.277 kb on + strand at 307.288 kb on - strand at 307.288 kb on - strand at 307.289 kb on + strand at 307.337 kb on + strand at 307.351 kb on + strand, within MMP_RS01665 at 307.355 kb on - strand, within MMP_RS01665 at 307.363 kb on - strand, within MMP_RS01665 at 307.363 kb on - strand, within MMP_RS01665 at 307.450 kb on + strand, within MMP_RS01665 at 307.609 kb on - strand, within MMP_RS01665 at 307.684 kb on + strand at 308.172 kb on - strand at 308.340 kb on + strand, within MMP_RS01675 at 308.592 kb on + strand at 308.592 kb on + strand at 308.595 kb on + strand at 308.612 kb on - strand at 308.613 kb on + strand at 308.613 kb on + strand at 308.614 kb on - strand at 308.615 kb on + strand at 308.671 kb on - strand at 308.671 kb on - strand at 308.672 kb on + strand at 308.674 kb on + strand at 308.676 kb on + strand at 308.677 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 306,323 - MMP_RS01655 0.37 +0.3 306,365 - MMP_RS01655 0.50 +0.1 306,499 + MMP_RS01655 0.88 +0.1 306,521 + +0.0 306,545 - +0.3 306,558 - -0.0 306,590 + -0.4 306,603 - -0.3 306,617 - +0.4 306,622 - +0.5 306,636 - -0.5 306,636 - +0.4 306,641 - -0.5 306,647 + -0.2 306,663 + +0.0 306,663 + -0.3 306,744 - MMP_RS01660 0.14 -0.2 306,745 + MMP_RS01660 0.14 +0.4 306,756 + MMP_RS01660 0.16 -0.1 306,999 + MMP_RS01660 0.57 -0.0 307,249 - -0.3 307,263 + +0.0 307,272 - -0.3 307,272 - -0.0 307,273 + -0.1 307,273 + +0.1 307,276 - -0.8 307,276 - -0.8 307,276 - -0.6 307,276 - -0.0 307,276 - -1.1 307,276 - -1.0 307,277 + -0.1 307,277 + +0.0 307,277 + -0.1 307,288 - -0.8 307,288 - -0.7 307,289 + -0.1 307,337 + +0.2 307,351 + MMP_RS01665 0.13 -0.6 307,355 - MMP_RS01665 0.14 -0.1 307,363 - MMP_RS01665 0.16 -1.8 307,363 - MMP_RS01665 0.16 -0.9 307,450 + MMP_RS01665 0.39 -0.1 307,609 - MMP_RS01665 0.80 -0.1 307,684 + -0.1 308,172 - +0.3 308,340 + MMP_RS01675 0.41 -0.2 308,592 + +0.5 308,592 + +0.4 308,595 + +0.1 308,612 - -0.0 308,613 + -0.2 308,613 + +0.8 308,614 - -0.2 308,615 + -0.1 308,671 - +0.7 308,671 - +0.4 308,672 + +0.2 308,674 + +0.4 308,676 + -0.2 308,677 - +0.4
Or see this region's nucleotide sequence