Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00905 and MMP_RS00910 are separated by 151 nucleotides MMP_RS00910 and MMP_RS00915 are separated by 18 nucleotides MMP_RS00915 and MMP_RS00920 are separated by 60 nucleotides
MMP_RS00905: MMP_RS00905 - phenylacetate--CoA ligase, at 169,144 to 170,445
_RS00905
MMP_RS00910: MMP_RS00910 - 2-phosphosulfolactate phosphatase, at 170,597 to 171,343
_RS00910
MMP_RS00915: MMP_RS00915 - DUF116 domain-containing protein, at 171,362 to 172,006
_RS00915
MMP_RS00920: MMP_RS00920 - TRC40/GET3/ArsA family transport-energizing ATPase, at 172,067 to 173,104
_RS00920
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1 at 170.536 kb on - strand at 170.579 kb on - strand at 170.582 kb on + strand at 170.593 kb on - strand at 170.599 kb on + strand at 170.693 kb on - strand, within MMP_RS00910 at 170.774 kb on - strand, within MMP_RS00910 at 170.826 kb on - strand, within MMP_RS00910 at 170.996 kb on + strand, within MMP_RS00910 at 171.029 kb on - strand, within MMP_RS00910 at 171.086 kb on - strand, within MMP_RS00910 at 171.165 kb on + strand, within MMP_RS00910 at 171.194 kb on - strand, within MMP_RS00910 at 171.196 kb on - strand, within MMP_RS00910 at 171.196 kb on - strand, within MMP_RS00910 at 171.196 kb on - strand, within MMP_RS00910 at 171.197 kb on + strand, within MMP_RS00910 at 171.197 kb on + strand, within MMP_RS00910 at 171.198 kb on - strand, within MMP_RS00910 at 171.198 kb on - strand, within MMP_RS00910 at 171.198 kb on - strand, within MMP_RS00910 at 171.199 kb on + strand, within MMP_RS00910 at 171.200 kb on - strand, within MMP_RS00910 at 171.201 kb on + strand, within MMP_RS00910 at 171.221 kb on - strand, within MMP_RS00910 at 171.227 kb on + strand, within MMP_RS00910 at 171.260 kb on - strand, within MMP_RS00910 at 171.280 kb on - strand at 171.417 kb on - strand at 171.417 kb on - strand at 171.444 kb on - strand, within MMP_RS00915 at 171.445 kb on + strand, within MMP_RS00915 at 171.472 kb on - strand, within MMP_RS00915 at 171.473 kb on + strand, within MMP_RS00915 at 171.504 kb on - strand, within MMP_RS00915 at 171.512 kb on - strand, within MMP_RS00915 at 171.513 kb on + strand, within MMP_RS00915 at 171.517 kb on - strand, within MMP_RS00915 at 171.541 kb on + strand, within MMP_RS00915 at 171.559 kb on + strand, within MMP_RS00915 at 171.559 kb on + strand, within MMP_RS00915 at 171.611 kb on - strand, within MMP_RS00915 at 171.823 kb on + strand, within MMP_RS00915 at 171.909 kb on - strand, within MMP_RS00915 at 171.946 kb on - strand at 172.036 kb on + strand at 172.522 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 170,536 - -0.0 170,579 - +0.1 170,582 + +0.4 170,593 - +0.1 170,599 + -0.2 170,693 - MMP_RS00910 0.13 +0.3 170,774 - MMP_RS00910 0.24 +0.4 170,826 - MMP_RS00910 0.31 -0.2 170,996 + MMP_RS00910 0.53 +0.5 171,029 - MMP_RS00910 0.58 +0.2 171,086 - MMP_RS00910 0.65 +0.5 171,165 + MMP_RS00910 0.76 -0.3 171,194 - MMP_RS00910 0.80 -0.1 171,196 - MMP_RS00910 0.80 -1.1 171,196 - MMP_RS00910 0.80 +0.4 171,196 - MMP_RS00910 0.80 +0.3 171,197 + MMP_RS00910 0.80 -0.4 171,197 + MMP_RS00910 0.80 +0.1 171,198 - MMP_RS00910 0.80 +0.4 171,198 - MMP_RS00910 0.80 +1.1 171,198 - MMP_RS00910 0.80 +0.2 171,199 + MMP_RS00910 0.81 -0.6 171,200 - MMP_RS00910 0.81 -0.4 171,201 + MMP_RS00910 0.81 +0.7 171,221 - MMP_RS00910 0.84 -0.0 171,227 + MMP_RS00910 0.84 -0.4 171,260 - MMP_RS00910 0.89 +0.2 171,280 - +0.3 171,417 - +0.5 171,417 - -0.1 171,444 - MMP_RS00915 0.13 -1.2 171,445 + MMP_RS00915 0.13 -1.0 171,472 - MMP_RS00915 0.17 +0.0 171,473 + MMP_RS00915 0.17 -0.3 171,504 - MMP_RS00915 0.22 -0.3 171,512 - MMP_RS00915 0.23 -0.0 171,513 + MMP_RS00915 0.23 -0.9 171,517 - MMP_RS00915 0.24 +1.3 171,541 + MMP_RS00915 0.28 -0.8 171,559 + MMP_RS00915 0.31 -0.5 171,559 + MMP_RS00915 0.31 -0.4 171,611 - MMP_RS00915 0.39 -0.6 171,823 + MMP_RS00915 0.71 +0.3 171,909 - MMP_RS00915 0.85 -1.7 171,946 - -0.6 172,036 + -0.4 172,522 + -2.7
Or see this region's nucleotide sequence