Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00885 and MMP_RS00890 are separated by 25 nucleotides MMP_RS00890 and MMP_RS00895 are separated by 0 nucleotides MMP_RS00895 and MMP_RS00900 are separated by 16 nucleotides MMP_RS00900 and MMP_RS00905 are separated by 71 nucleotides
MMP_RS00885: MMP_RS00885 - 30S ribosomal protein S19e, at 167,490 to 167,915
_RS00885
MMP_RS00890: MMP_RS00890 - DNA-binding protein, at 167,941 to 168,300
_RS00890
MMP_RS00895: MMP_RS00895 - hypothetical protein, at 168,301 to 168,900
_RS00895
MMP_RS00900: MMP_RS00900 - 50S ribosomal protein L39e, at 168,917 to 169,072
_RS00900
MMP_RS00905: MMP_RS00905 - phenylacetate--CoA ligase, at 169,144 to 170,445
_RS00905
Position (kb) 168
169 Strain fitness (log2 ratio) -2
-1
0
1 at 167.906 kb on + strand at 168.288 kb on + strand at 168.527 kb on - strand, within MMP_RS00895 at 168.740 kb on - strand, within MMP_RS00895 at 168.740 kb on - strand, within MMP_RS00895 at 168.741 kb on + strand, within MMP_RS00895 at 168.752 kb on + strand, within MMP_RS00895 at 168.758 kb on - strand, within MMP_RS00895 at 168.988 kb on - strand, within MMP_RS00900 at 169.021 kb on - strand, within MMP_RS00900 at 169.560 kb on - strand, within MMP_RS00905 at 169.651 kb on - strand, within MMP_RS00905
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 167,906 + -1.0 168,288 + -2.0 168,527 - MMP_RS00895 0.38 -2.2 168,740 - MMP_RS00895 0.73 -2.5 168,740 - MMP_RS00895 0.73 -2.4 168,741 + MMP_RS00895 0.73 -1.3 168,752 + MMP_RS00895 0.75 -1.5 168,758 - MMP_RS00895 0.76 -2.3 168,988 - MMP_RS00900 0.46 -0.9 169,021 - MMP_RS00900 0.67 -0.0 169,560 - MMP_RS00905 0.32 -0.2 169,651 - MMP_RS00905 0.39 +0.1
Or see this region's nucleotide sequence