Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19380 and IAI47_19385 are separated by 698 nucleotides IAI47_19385 and IAI47_19390 overlap by 4 nucleotides IAI47_19390 and IAI47_19395 overlap by 4 nucleotides
IAI47_19380: IAI47_19380 - hypothetical protein, at 101,863 to 102,426
_19380
IAI47_19385: IAI47_19385 - (2Fe-2S)-binding protein, at 103,125 to 103,589
_19385
IAI47_19390: IAI47_19390 - xanthine dehydrogenase family protein subunit M, at 103,586 to 104,578
_19390
IAI47_19395: IAI47_19395 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 104,575 to 106,884
_19395
Position (kb) 103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 102.129 kb on - strand, within IAI47_19380 at 102.145 kb on - strand, within IAI47_19380 at 102.172 kb on - strand, within IAI47_19380 at 102.314 kb on - strand, within IAI47_19380 at 102.377 kb on - strand at 102.379 kb on - strand at 102.412 kb on - strand at 102.471 kb on + strand at 102.485 kb on + strand at 102.485 kb on + strand at 102.486 kb on - strand at 102.486 kb on - strand at 102.488 kb on + strand at 102.488 kb on + strand at 102.488 kb on + strand at 102.489 kb on - strand at 102.489 kb on - strand at 102.504 kb on - strand at 102.529 kb on + strand at 102.530 kb on - strand at 102.532 kb on + strand at 102.533 kb on - strand at 102.533 kb on - strand at 102.575 kb on - strand at 102.580 kb on + strand at 102.593 kb on + strand at 102.607 kb on + strand at 102.607 kb on + strand at 102.607 kb on + strand at 102.608 kb on - strand at 102.612 kb on + strand at 102.612 kb on + strand at 102.612 kb on + strand at 102.613 kb on - strand at 102.613 kb on - strand at 102.705 kb on + strand at 102.706 kb on - strand at 102.706 kb on - strand at 102.710 kb on + strand at 102.710 kb on + strand at 102.710 kb on + strand at 102.710 kb on + strand at 102.711 kb on - strand at 102.711 kb on - strand at 102.711 kb on - strand at 102.724 kb on + strand at 102.725 kb on - strand at 102.725 kb on - strand at 102.747 kb on + strand at 102.747 kb on + strand at 102.784 kb on + strand at 102.802 kb on - strand at 102.837 kb on + strand at 102.837 kb on + strand at 102.838 kb on - strand at 102.838 kb on - strand at 102.838 kb on - strand at 102.838 kb on - strand at 102.887 kb on + strand at 102.933 kb on - strand at 102.945 kb on + strand at 102.979 kb on + strand at 102.997 kb on + strand at 102.997 kb on + strand at 102.997 kb on + strand at 102.997 kb on + strand at 102.998 kb on - strand at 102.998 kb on - strand at 102.998 kb on - strand at 103.005 kb on + strand at 103.005 kb on + strand at 103.019 kb on - strand at 103.055 kb on + strand at 103.056 kb on - strand at 103.076 kb on - strand at 103.114 kb on + strand at 103.114 kb on + strand at 103.114 kb on + strand at 103.115 kb on - strand at 103.115 kb on - strand at 103.120 kb on + strand at 103.121 kb on - strand at 103.203 kb on - strand, within IAI47_19385 at 103.214 kb on + strand, within IAI47_19385 at 103.385 kb on + strand, within IAI47_19385 at 103.413 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.434 kb on - strand, within IAI47_19385 at 103.452 kb on - strand, within IAI47_19385 at 103.452 kb on - strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.640 kb on - strand at 103.726 kb on - strand, within IAI47_19390 at 103.726 kb on - strand, within IAI47_19390 at 103.743 kb on + strand, within IAI47_19390 at 103.743 kb on + strand, within IAI47_19390 at 103.753 kb on + strand, within IAI47_19390 at 103.778 kb on - strand, within IAI47_19390 at 103.856 kb on + strand, within IAI47_19390 at 103.894 kb on + strand, within IAI47_19390 at 103.895 kb on - strand, within IAI47_19390 at 103.895 kb on - strand, within IAI47_19390 at 103.898 kb on - strand, within IAI47_19390 at 103.898 kb on - strand, within IAI47_19390 at 103.898 kb on - strand, within IAI47_19390 at 103.898 kb on - strand, within IAI47_19390 at 103.920 kb on + strand, within IAI47_19390 at 103.920 kb on + strand, within IAI47_19390 at 103.930 kb on + strand, within IAI47_19390 at 103.944 kb on - strand, within IAI47_19390 at 103.946 kb on + strand, within IAI47_19390 at 103.966 kb on + strand, within IAI47_19390 at 103.967 kb on - strand, within IAI47_19390 at 103.976 kb on - strand, within IAI47_19390 at 104.225 kb on - strand, within IAI47_19390 at 104.273 kb on + strand, within IAI47_19390 at 104.274 kb on - strand, within IAI47_19390 at 104.278 kb on + strand, within IAI47_19390 at 104.301 kb on - strand, within IAI47_19390 at 104.301 kb on - strand, within IAI47_19390 at 104.301 kb on - strand, within IAI47_19390 at 104.368 kb on + strand, within IAI47_19390 at 104.443 kb on + strand, within IAI47_19390 at 104.444 kb on - strand, within IAI47_19390 at 104.513 kb on + strand at 104.514 kb on - strand at 104.514 kb on - strand at 104.514 kb on - strand at 104.514 kb on - strand at 104.515 kb on + strand at 104.515 kb on + strand at 104.515 kb on + strand at 104.516 kb on - strand at 104.516 kb on - strand at 104.585 kb on + strand at 104.586 kb on - strand at 104.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 102,129 - IAI47_19380 0.47 -0.5 102,145 - IAI47_19380 0.50 -0.5 102,172 - IAI47_19380 0.55 -0.2 102,314 - IAI47_19380 0.80 -0.3 102,377 - +1.1 102,379 - +0.9 102,412 - -0.4 102,471 + +1.6 102,485 + -2.8 102,485 + +0.6 102,486 - +1.0 102,486 - +1.0 102,488 + -0.4 102,488 + +2.4 102,488 + -0.5 102,489 - +2.2 102,489 - +1.4 102,504 - +0.3 102,529 + +1.7 102,530 - +1.8 102,532 + -0.4 102,533 - +0.1 102,533 - -1.2 102,575 - +0.6 102,580 + -1.4 102,593 + +1.1 102,607 + -0.7 102,607 + +1.3 102,607 + -2.1 102,608 - +0.4 102,612 + +0.4 102,612 + -0.1 102,612 + +0.5 102,613 - +3.9 102,613 - +0.0 102,705 + -1.4 102,706 - -0.7 102,706 - +0.4 102,710 + +0.2 102,710 + +0.0 102,710 + +0.0 102,710 + +1.3 102,711 - -0.1 102,711 - -1.8 102,711 - -0.7 102,724 + +1.3 102,725 - -0.4 102,725 - +0.0 102,747 + -1.0 102,747 + +0.2 102,784 + -1.1 102,802 - +2.1 102,837 + +1.5 102,837 + +0.4 102,838 - +0.8 102,838 - +3.1 102,838 - -1.2 102,838 - -1.7 102,887 + -1.1 102,933 - +0.6 102,945 + -0.2 102,979 + +2.4 102,997 + -0.7 102,997 + +2.2 102,997 + -1.7 102,997 + -0.4 102,998 - +0.0 102,998 - -0.4 102,998 - +0.4 103,005 + -1.7 103,005 + -0.5 103,019 - -0.7 103,055 + -1.5 103,056 - +0.4 103,076 - +1.6 103,114 + -2.4 103,114 + +0.8 103,114 + +2.6 103,115 - +2.5 103,115 - -2.7 103,120 + +0.5 103,121 - -0.5 103,203 - IAI47_19385 0.17 +1.1 103,214 + IAI47_19385 0.19 +0.0 103,385 + IAI47_19385 0.56 +1.6 103,413 + IAI47_19385 0.62 -0.4 103,433 + IAI47_19385 0.66 +0.6 103,433 + IAI47_19385 0.66 +1.2 103,433 + IAI47_19385 0.66 +2.0 103,433 + IAI47_19385 0.66 -1.2 103,433 + IAI47_19385 0.66 -1.2 103,433 + IAI47_19385 0.66 +0.8 103,434 - IAI47_19385 0.66 -0.3 103,452 - IAI47_19385 0.70 -0.9 103,452 - IAI47_19385 0.70 +0.1 103,494 + IAI47_19385 0.79 +1.4 103,494 + IAI47_19385 0.79 +1.0 103,494 + IAI47_19385 0.79 +1.9 103,494 + IAI47_19385 0.79 +0.5 103,494 + IAI47_19385 0.79 +1.2 103,494 + IAI47_19385 0.79 +0.2 103,494 + IAI47_19385 0.79 -0.7 103,495 - IAI47_19385 0.80 +1.4 103,495 - IAI47_19385 0.80 +1.8 103,495 - IAI47_19385 0.80 +1.3 103,495 - IAI47_19385 0.80 +1.0 103,495 - IAI47_19385 0.80 -2.5 103,495 - IAI47_19385 0.80 +0.2 103,495 - IAI47_19385 0.80 -0.2 103,496 + IAI47_19385 0.80 -0.2 103,496 + IAI47_19385 0.80 -0.2 103,496 + IAI47_19385 0.80 +0.2 103,496 + IAI47_19385 0.80 -1.5 103,496 + IAI47_19385 0.80 -0.7 103,496 + IAI47_19385 0.80 +1.0 103,496 + IAI47_19385 0.80 -1.5 103,496 + IAI47_19385 0.80 +0.3 103,497 - IAI47_19385 0.80 +0.5 103,497 - IAI47_19385 0.80 +0.6 103,497 - IAI47_19385 0.80 +0.7 103,497 - IAI47_19385 0.80 +3.6 103,497 - IAI47_19385 0.80 +2.3 103,497 - IAI47_19385 0.80 -0.5 103,497 - IAI47_19385 0.80 +0.6 103,640 - +1.0 103,726 - IAI47_19390 0.14 -0.4 103,726 - IAI47_19390 0.14 -1.5 103,743 + IAI47_19390 0.16 -0.4 103,743 + IAI47_19390 0.16 -0.1 103,753 + IAI47_19390 0.17 +0.3 103,778 - IAI47_19390 0.19 +1.5 103,856 + IAI47_19390 0.27 -2.1 103,894 + IAI47_19390 0.31 +1.0 103,895 - IAI47_19390 0.31 +0.2 103,895 - IAI47_19390 0.31 +1.8 103,898 - IAI47_19390 0.31 +0.6 103,898 - IAI47_19390 0.31 -2.1 103,898 - IAI47_19390 0.31 +0.5 103,898 - IAI47_19390 0.31 +1.4 103,920 + IAI47_19390 0.34 -0.4 103,920 + IAI47_19390 0.34 +0.6 103,930 + IAI47_19390 0.35 +0.5 103,944 - IAI47_19390 0.36 -0.5 103,946 + IAI47_19390 0.36 -1.4 103,966 + IAI47_19390 0.38 +0.2 103,967 - IAI47_19390 0.38 +1.0 103,976 - IAI47_19390 0.39 -0.4 104,225 - IAI47_19390 0.64 +0.6 104,273 + IAI47_19390 0.69 +1.3 104,274 - IAI47_19390 0.69 -3.3 104,278 + IAI47_19390 0.70 -1.7 104,301 - IAI47_19390 0.72 +1.2 104,301 - IAI47_19390 0.72 +1.4 104,301 - IAI47_19390 0.72 +1.7 104,368 + IAI47_19390 0.79 +1.4 104,443 + IAI47_19390 0.86 -0.4 104,444 - IAI47_19390 0.86 +1.0 104,513 + +0.6 104,514 - +2.6 104,514 - +2.6 104,514 - +1.2 104,514 - +0.2 104,515 + -1.0 104,515 + +1.8 104,515 + -2.7 104,516 - +0.0 104,516 - +1.4 104,585 + -1.5 104,586 - -1.4 104,586 - -1.8
Or see this region's nucleotide sequence