Strain Fitness in Pantoea sp. MT58 around IAI47_12975

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,745,149	+		IAI47_12970	0.47	-0.3
2,745,149	+		IAI47_12970	0.47	+0.6
2,745,149	+		IAI47_12970	0.47	+0.7
2,745,150	-		IAI47_12970	0.47	+0.5
2,745,150	-		IAI47_12970	0.47	-0.1
2,745,150	-		IAI47_12970	0.47	-2.9
2,745,184	+		IAI47_12970	0.49	+0.3
2,745,185	-		IAI47_12970	0.49	-1.6
2,745,185	-		IAI47_12970	0.49	-0.4
2,745,262	+		IAI47_12970	0.53	+0.0
2,745,262	+		IAI47_12970	0.53	-0.7
2,745,262	+		IAI47_12970	0.53	-0.7
2,745,262	+		IAI47_12970	0.53	+0.3
2,745,262	+		IAI47_12970	0.53	-0.5
2,745,263	-		IAI47_12970	0.54	+0.1
2,745,263	-		IAI47_12970	0.54	+0.5
2,745,263	-		IAI47_12970	0.54	+0.1
2,745,263	-		IAI47_12970	0.54	+1.1
2,745,300	-		IAI47_12970	0.56	+0.4
2,745,349	-		IAI47_12970	0.59	+1.7
2,745,355	+		IAI47_12970	0.59	-2.8
2,745,355	+		IAI47_12970	0.59	-1.3
2,745,355	+		IAI47_12970	0.59	+0.6
2,745,355	+		IAI47_12970	0.59	-1.5
2,745,355	+		IAI47_12970	0.59	+0.0
2,745,425	-		IAI47_12970	0.63	+1.9
2,745,425	-		IAI47_12970	0.63	+0.9
2,745,448	+		IAI47_12970	0.64	-2.6
2,745,449	-		IAI47_12970	0.64	-0.9
2,745,465	+		IAI47_12970	0.65	+0.2
2,745,466	-		IAI47_12970	0.65	+1.0
2,745,512	-		IAI47_12970	0.68	+0.5
2,745,512	-		IAI47_12970	0.68	-1.3
2,745,553	-		IAI47_12970	0.70	-2.4
2,745,673	-		IAI47_12970	0.77	+3.3
2,745,673	-		IAI47_12970	0.77	-0.9
2,745,673	-		IAI47_12970	0.77	+0.5
2,745,766	+		IAI47_12970	0.83	+3.1
2,745,856	+		IAI47_12970	0.88	-0.9
2,745,988	+				-0.6
2,745,988	+				-2.0
2,745,988	+				-0.0
2,745,988	+				-1.4
2,746,031	+				+0.7
2,746,032	-				+0.7
2,746,032	-				+0.5
2,746,032	-				+0.3
2,746,056	-				-0.6
2,746,060	+				+1.1
2,746,061	-				-1.9
2,746,130	+				-0.7
2,746,130	+				-0.8
2,746,130	+				-1.0
2,746,130	+				+1.7
2,746,130	+				-3.3
2,746,130	+				-2.2
2,746,130	+				+1.7
2,746,130	+				+0.4
2,746,130	+				-0.1
2,746,130	+				-1.0
2,746,131	-				+2.0
2,746,131	-				+0.3
2,746,131	-				+0.6
2,746,131	-				+0.8
2,746,131	-				+1.4
2,746,131	-				+0.7
2,746,144	+				-1.4
2,746,145	-				-0.8
2,746,154	+				-3.2
2,746,183	+				+0.2
2,746,184	-				+1.5
2,746,222	-				-0.1
2,746,270	+		IAI47_12975	0.14	-0.6
2,746,270	+		IAI47_12975	0.14	-0.4
2,746,270	+		IAI47_12975	0.14	-0.6
2,746,359	+		IAI47_12975	0.22	-0.9
2,746,359	+		IAI47_12975	0.22	-0.1
2,746,359	+		IAI47_12975	0.22	-0.0
2,746,359	+		IAI47_12975	0.22	-0.9
2,746,359	+		IAI47_12975	0.22	+3.1
2,746,359	+		IAI47_12975	0.22	-0.3
2,746,359	+		IAI47_12975	0.22	-1.7
2,746,359	+		IAI47_12975	0.22	-2.7
2,746,360	-		IAI47_12975	0.23	-0.3
2,746,360	-		IAI47_12975	0.23	-1.7
2,746,360	-		IAI47_12975	0.23	-0.9
2,746,360	-		IAI47_12975	0.23	+2.4
2,746,361	+		IAI47_12975	0.23	+2.0
2,746,361	+		IAI47_12975	0.23	+0.3
2,746,361	+		IAI47_12975	0.23	-0.9
2,746,361	+		IAI47_12975	0.23	+0.1
2,746,361	+		IAI47_12975	0.23	+1.6
2,746,361	+		IAI47_12975	0.23	-0.3
2,746,361	+		IAI47_12975	0.23	+0.3
2,746,361	+		IAI47_12975	0.23	-0.1
2,746,362	-		IAI47_12975	0.23	+1.4
2,746,362	-		IAI47_12975	0.23	-2.4
2,746,362	-		IAI47_12975	0.23	-2.3
2,746,362	-		IAI47_12975	0.23	+0.5
2,746,362	-		IAI47_12975	0.23	-0.6
2,746,362	-		IAI47_12975	0.23	+0.1
2,746,362	-		IAI47_12975	0.23	-1.3
2,746,362	-		IAI47_12975	0.23	+0.1
2,746,382	+		IAI47_12975	0.25	-1.3
2,746,382	+		IAI47_12975	0.25	+1.1
2,746,382	+		IAI47_12975	0.25	-0.3
2,746,382	+		IAI47_12975	0.25	+1.9
2,746,382	+		IAI47_12975	0.25	+0.0
2,746,383	-		IAI47_12975	0.25	-0.3
2,746,383	-		IAI47_12975	0.25	-3.6
2,746,383	-		IAI47_12975	0.25	-0.9
2,746,383	-		IAI47_12975	0.25	+1.2
2,746,386	+		IAI47_12975	0.25	+1.3
2,746,386	+		IAI47_12975	0.25	-2.6
2,746,386	+		IAI47_12975	0.25	+0.1
2,746,386	+		IAI47_12975	0.25	-1.0
2,746,386	+		IAI47_12975	0.25	+1.1
2,746,386	+		IAI47_12975	0.25	+0.7
2,746,386	+		IAI47_12975	0.25	+0.4
2,746,386	+		IAI47_12975	0.25	-0.6
2,746,387	-		IAI47_12975	0.25	-0.9
2,746,387	-		IAI47_12975	0.25	+0.7
2,746,387	-		IAI47_12975	0.25	+0.3
2,746,387	-		IAI47_12975	0.25	+1.6
2,746,387	-		IAI47_12975	0.25	-1.1
2,746,387	-		IAI47_12975	0.25	+0.7
2,746,387	-		IAI47_12975	0.25	-1.1
2,746,387	-		IAI47_12975	0.25	+1.4
2,746,387	-		IAI47_12975	0.25	-0.1
2,746,387	-		IAI47_12975	0.25	+1.3
2,746,387	-		IAI47_12975	0.25	-0.9
2,746,392	+		IAI47_12975	0.26	-0.5
2,746,392	+		IAI47_12975	0.26	+0.5
2,746,392	+		IAI47_12975	0.26	+0.3
2,746,392	+		IAI47_12975	0.26	+0.1
2,746,392	+		IAI47_12975	0.26	-0.7
2,746,392	+		IAI47_12975	0.26	-2.2
2,746,392	+		IAI47_12975	0.26	-1.6
2,746,393	-		IAI47_12975	0.26	-0.1
2,746,393	-		IAI47_12975	0.26	-1.4
2,746,393	-		IAI47_12975	0.26	+0.4
2,746,393	-		IAI47_12975	0.26	+1.7
2,746,393	-		IAI47_12975	0.26	-0.7
2,746,393	-		IAI47_12975	0.26	+0.7
2,746,393	-		IAI47_12975	0.26	+0.9
2,746,393	-		IAI47_12975	0.26	+1.0
2,746,505	+		IAI47_12975	0.37	-1.1
2,746,506	-		IAI47_12975	0.37	-2.2
2,746,506	-		IAI47_12975	0.37	+0.6
2,746,556	+		IAI47_12975	0.42	+0.8
2,746,556	+		IAI47_12975	0.42	+1.5
2,746,556	+		IAI47_12975	0.42	+0.5
2,746,556	+		IAI47_12975	0.42	+1.1
2,746,576	-		IAI47_12975	0.44	-0.3
2,746,598	+		IAI47_12975	0.46	-0.7
2,746,598	+		IAI47_12975	0.46	+1.8
2,746,610	+		IAI47_12975	0.48	-2.0
2,746,610	+		IAI47_12975	0.48	+0.9
2,746,610	+		IAI47_12975	0.48	+1.7
2,746,610	+		IAI47_12975	0.48	-0.6
2,746,610	+		IAI47_12975	0.48	-0.7
2,746,610	+		IAI47_12975	0.48	+0.6
2,746,610	+		IAI47_12975	0.48	+0.5
2,746,610	+		IAI47_12975	0.48	-0.9
2,746,610	+		IAI47_12975	0.48	+2.5
2,746,611	-		IAI47_12975	0.48	-1.7
2,746,611	-		IAI47_12975	0.48	-1.2
2,746,611	-		IAI47_12975	0.48	-1.7
2,746,611	-		IAI47_12975	0.48	-0.1
2,746,611	-		IAI47_12975	0.48	-1.4
2,746,627	+		IAI47_12975	0.49	+0.9
2,746,640	+		IAI47_12975	0.50	+0.8
2,746,753	+		IAI47_12975	0.62	+0.1
2,746,753	+		IAI47_12975	0.62	+0.9
2,746,753	+		IAI47_12975	0.62	+1.4
2,746,753	+		IAI47_12975	0.62	-1.7
2,746,753	+		IAI47_12975	0.62	+0.9
2,746,753	+		IAI47_12975	0.62	+0.4
2,746,753	+		IAI47_12975	0.62	-2.1
2,746,754	-		IAI47_12975	0.62	-0.9
2,746,754	-		IAI47_12975	0.62	-0.0
2,746,754	-		IAI47_12975	0.62	+3.3
2,746,754	-		IAI47_12975	0.62	-2.4
2,746,754	-		IAI47_12975	0.62	-0.7
2,746,754	-		IAI47_12975	0.62	-1.5
2,746,754	-		IAI47_12975	0.62	+0.2
2,746,754	-		IAI47_12975	0.62	-2.0
2,746,851	+		IAI47_12975	0.72	-0.9
2,746,851	+		IAI47_12975	0.72	-2.0
2,746,852	-		IAI47_12975	0.72	+0.9
2,747,002	+		IAI47_12975	0.87	+1.5
2,747,032	+		IAI47_12975	0.90	-2.1
2,747,032	+		IAI47_12975	0.90	-1.0
2,747,051	+				+1.7
2,747,075	+				+0.7
2,747,075	+				+1.1
2,747,133	+				+1.1
2,747,133	+				-2.2
2,747,134	-				-0.5
2,747,134	-				-0.3
2,747,156	+				+0.3
2,747,156	+				-0.3
2,747,156	+				-1.7
2,747,156	+				+0.1
2,747,156	+				+0.4
2,747,156	+				+2.9
2,747,156	+				-1.9
2,747,156	+				-0.3
2,747,157	-				-0.1
2,747,168	-				+0.5
2,747,168	-				-1.2
2,747,213	+				+1.1
2,747,214	-				-0.9
2,747,366	+		IAI47_12980	0.27	+1.1
2,747,366	+		IAI47_12980	0.27	+0.5
2,747,367	-		IAI47_12980	0.28	-1.1
2,747,367	-		IAI47_12980	0.28	-1.1
2,747,469	+		IAI47_12980	0.40	+2.7
2,747,521	-		IAI47_12980	0.46	-0.9
2,747,521	-		IAI47_12980	0.46	-0.6
2,747,521	-		IAI47_12980	0.46	+0.4
2,747,521	-		IAI47_12980	0.46	-0.0
2,747,759	+		IAI47_12980	0.75	-3.2
2,747,759	+		IAI47_12980	0.75	+0.2
2,747,760	-		IAI47_12980	0.75	-0.1
2,747,760	-		IAI47_12980	0.75	-0.9
2,747,821	-		IAI47_12980	0.83	-0.2
2,747,821	-		IAI47_12980	0.83	-2.2
2,747,822	+		IAI47_12980	0.83	+0.2
2,747,822	+		IAI47_12980	0.83	+0.1
2,747,823	-		IAI47_12980	0.83	-0.6
2,747,823	-		IAI47_12980	0.83	-1.6
2,747,823	-		IAI47_12980	0.83	-1.1
2,747,823	-		IAI47_12980	0.83	-1.3
2,747,841	+		IAI47_12980	0.85	-2.0
2,747,842	-		IAI47_12980	0.85	-1.9
2,747,905	+				+0.5
2,747,942	-				-2.9
2,748,032	-		IAI47_12985	0.22	-2.1
2,748,116	+		IAI47_12985	0.48	-0.6
2,748,117	-		IAI47_12985	0.49	+0.1
2,748,133	+		IAI47_12985	0.54	+1.4
2,748,133	+		IAI47_12985	0.54	+0.6