Strain Fitness in Pantoea sp. MT58 around IAI47_12775

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,690,128	+		IAI47_12765	0.79	-1.3
2,690,129	-		IAI47_12765	0.79	-0.9
2,690,129	-		IAI47_12765	0.79	-1.0
2,690,209	+		IAI47_12765	0.86	+3.5
2,690,210	-		IAI47_12765	0.86	+0.6
2,690,210	-		IAI47_12765	0.86	-3.0
2,690,212	+		IAI47_12765	0.86	-2.4
2,690,212	+		IAI47_12765	0.86	-0.4
2,690,212	+		IAI47_12765	0.86	-2.2
2,690,212	+		IAI47_12765	0.86	+0.5
2,690,213	-		IAI47_12765	0.86	-0.9
2,690,215	+		IAI47_12765	0.86	+2.4
2,690,215	+		IAI47_12765	0.86	-1.1
2,690,227	+		IAI47_12765	0.87	+1.1
2,690,227	+		IAI47_12765	0.87	-3.0
2,690,262	+				-1.6
2,690,262	+				-0.3
2,690,262	+				-0.6
2,690,263	-				+1.5
2,690,263	-				-0.6
2,690,291	+				-2.9
2,690,292	-				-1.1
2,690,292	-				+2.3
2,690,292	-				-0.6
2,690,300	-				+1.1
2,690,300	-				-0.0
2,690,300	-				+0.4
2,690,341	+				+3.2
2,690,341	+				-2.4
2,690,341	+				+0.3
2,690,341	+				-0.2
2,690,341	+				+2.2
2,690,342	-				+1.2
2,690,342	-				+0.5
2,690,342	-				-0.9
2,690,342	-				+1.2
2,690,342	-				-1.7
2,690,342	-				-0.9
2,690,342	-				+0.4
2,690,342	-				+2.0
2,690,342	-				-2.1
2,690,342	-				+0.1
2,690,378	+				-0.6
2,690,378	+				+1.7
2,690,379	-				-2.4
2,690,379	-				+0.4
2,690,379	-				+2.6
2,690,422	+				-1.9
2,690,422	+				-0.0
2,690,463	+				-1.3
2,690,464	-				-2.4
2,690,487	+				+0.4
2,690,487	+				-0.5
2,690,487	+				-2.8
2,690,539	+		IAI47_12770	0.15	+0.7
2,690,554	-		IAI47_12770	0.17	+0.6
2,690,554	-		IAI47_12770	0.17	+0.7
2,690,562	+		IAI47_12770	0.18	-1.7
2,690,562	+		IAI47_12770	0.18	-0.6
2,690,562	+		IAI47_12770	0.18	+0.1
2,690,562	+		IAI47_12770	0.18	+1.1
2,690,562	+		IAI47_12770	0.18	+1.4
2,690,562	+		IAI47_12770	0.18	+1.9
2,690,562	+		IAI47_12770	0.18	-0.1
2,690,562	+		IAI47_12770	0.18	+0.5
2,690,562	+		IAI47_12770	0.18	+0.4
2,690,563	-		IAI47_12770	0.19	-0.1
2,690,563	-		IAI47_12770	0.19	-0.7
2,690,563	-		IAI47_12770	0.19	+0.8
2,690,563	-		IAI47_12770	0.19	+0.5
2,690,563	-		IAI47_12770	0.19	-1.7
2,690,614	-		IAI47_12770	0.27	+1.1
2,690,620	-		IAI47_12770	0.28	+1.4
2,690,719	+		IAI47_12770	0.43	-2.7
2,690,719	+		IAI47_12770	0.43	+0.4
2,690,719	+		IAI47_12770	0.43	+0.7
2,690,720	-		IAI47_12770	0.43	-1.2
2,690,720	-		IAI47_12770	0.43	+0.7
2,690,934	+		IAI47_12770	0.77	-1.0
2,690,935	-		IAI47_12770	0.78	-0.6
2,690,935	-		IAI47_12770	0.78	-0.8
2,691,060	+				+2.1
2,691,060	+				-2.1
2,691,060	+				+1.3
2,691,061	-				-0.6
2,691,061	-				-0.7
2,691,061	-				+1.0
2,691,061	-				+2.0
2,691,116	+				-1.7
2,691,117	-				-0.1
2,691,144	+				+1.7
2,691,144	+				-0.1
2,691,144	+				-0.8
2,691,144	+				+1.0
2,691,144	+				+0.5
2,691,144	+				+0.1
2,691,144	+				-0.9
2,691,144	+				+0.3
2,691,144	+				-1.4
2,691,144	+				+1.0
2,691,144	+				+1.1
2,691,145	-				-0.8
2,691,145	-				+0.3
2,691,145	-				+0.7
2,691,145	-				+2.0
2,691,145	-				+1.3
2,691,145	-				-0.1
2,691,148	+				-0.3
2,691,148	+				+0.0
2,691,148	+				+0.5
2,691,148	+				-0.6
2,691,149	-				-2.6
2,691,149	-				+3.1
2,691,149	-				-0.4
2,691,149	-				+1.3
2,691,149	-				+2.9
2,691,149	-				-0.3
2,691,157	-				-0.1
2,691,168	-				+0.1
2,691,170	+		IAI47_12775	0.10	-2.1
2,691,171	-		IAI47_12775	0.10	-1.2
2,691,171	-		IAI47_12775	0.10	+0.9
2,691,171	-		IAI47_12775	0.10	-0.3
2,691,175	+		IAI47_12775	0.11	-0.5
2,691,175	+		IAI47_12775	0.11	+3.5
2,691,176	-		IAI47_12775	0.11	+1.9
2,691,176	-		IAI47_12775	0.11	-1.4
2,691,176	-		IAI47_12775	0.11	+0.6
2,691,197	-		IAI47_12775	0.15	-0.3
2,691,212	-		IAI47_12775	0.18	-0.6
2,691,238	-		IAI47_12775	0.22	-1.0
2,691,269	+		IAI47_12775	0.28	-0.7
2,691,269	+		IAI47_12775	0.28	+0.5
2,691,269	+		IAI47_12775	0.28	-0.6
2,691,269	+		IAI47_12775	0.28	+2.1
2,691,269	+		IAI47_12775	0.28	+0.9
2,691,269	+		IAI47_12775	0.28	+1.9
2,691,270	-		IAI47_12775	0.28	+0.1
2,691,270	-		IAI47_12775	0.28	-0.1
2,691,270	-		IAI47_12775	0.28	-1.3
2,691,270	-		IAI47_12775	0.28	+0.4
2,691,270	-		IAI47_12775	0.28	+0.4
2,691,270	-		IAI47_12775	0.28	-0.3
2,691,304	+		IAI47_12775	0.34	-0.2
2,691,304	+		IAI47_12775	0.34	-2.2
2,691,305	-		IAI47_12775	0.35	+0.6
2,691,305	-		IAI47_12775	0.35	+0.4
2,691,305	-		IAI47_12775	0.35	+1.2
2,691,305	-		IAI47_12775	0.35	-2.2
2,691,305	-		IAI47_12775	0.35	-0.3
2,691,305	-		IAI47_12775	0.35	-0.6
2,691,305	-		IAI47_12775	0.35	-1.5
2,691,333	-		IAI47_12775	0.40	-0.6
2,691,358	-		IAI47_12775	0.44	-0.9
2,691,363	+		IAI47_12775	0.45	-1.1
2,691,364	-		IAI47_12775	0.45	-2.4
2,691,364	-		IAI47_12775	0.45	-0.6
2,691,426	+		IAI47_12775	0.57	-1.6
2,691,426	+		IAI47_12775	0.57	+2.1
2,691,427	-		IAI47_12775	0.57	-2.8
2,691,438	-		IAI47_12775	0.59	-1.0
2,691,458	-		IAI47_12775	0.62	+0.6
2,691,482	+		IAI47_12775	0.67	-0.2
2,691,482	+		IAI47_12775	0.67	-1.1
2,691,483	-		IAI47_12775	0.67	-0.6
2,691,490	-		IAI47_12775	0.68	-0.9
2,691,490	-		IAI47_12775	0.68	+2.2
2,691,510	+		IAI47_12775	0.72	-1.1
2,691,511	-		IAI47_12775	0.72	+1.5
2,691,511	-		IAI47_12775	0.72	-1.4
2,691,534	+		IAI47_12775	0.76	-0.4
2,691,535	-		IAI47_12775	0.77	-0.1
2,691,535	-		IAI47_12775	0.77	+0.0
2,691,537	+		IAI47_12775	0.77	+2.7
2,691,537	+		IAI47_12775	0.77	+0.9
2,691,537	+		IAI47_12775	0.77	-0.1
2,691,537	+		IAI47_12775	0.77	+0.0
2,691,537	+		IAI47_12775	0.77	-2.5
2,691,537	+		IAI47_12775	0.77	-3.1
2,691,538	-		IAI47_12775	0.77	+0.9
2,691,538	-		IAI47_12775	0.77	+0.4
2,691,538	-		IAI47_12775	0.77	-0.1
2,691,547	+		IAI47_12775	0.79	+0.1
2,691,547	+		IAI47_12775	0.79	+1.9
2,691,547	+		IAI47_12775	0.79	-0.5
2,691,547	+		IAI47_12775	0.79	-2.3
2,691,564	+		IAI47_12775	0.82	+0.8
2,691,564	+		IAI47_12775	0.82	+1.4
2,691,564	+		IAI47_12775	0.82	-1.1
2,691,564	+		IAI47_12775	0.82	-0.0
2,691,564	+		IAI47_12775	0.82	-1.7
2,691,565	-		IAI47_12775	0.82	+0.2
2,691,565	-		IAI47_12775	0.82	+2.7
2,691,565	-		IAI47_12775	0.82	+1.7
2,691,595	+		IAI47_12775	0.87	-1.1
2,691,596	-		IAI47_12775	0.88	+2.2
2,691,618	+				-0.8
2,691,619	-				+1.1
2,691,631	+				+1.1
2,691,632	-				-1.7
2,691,632	-				+0.3
2,691,632	-				-1.6
2,691,632	-				-0.3
2,691,632	-				-1.9
2,691,654	+				-1.6
2,691,654	+				+0.4
2,691,654	+				-0.4
2,691,655	-				-2.4
2,691,655	-				-0.1
2,691,657	+				+0.8
2,691,657	+				-0.9
2,691,657	+				+0.1
2,691,657	+				+0.2
2,691,657	+				-0.6
2,691,657	+				+1.7
2,691,657	+				+1.0
2,691,658	-				-0.7
2,691,658	-				-0.4
2,691,665	+				+2.9
2,691,665	+				-2.9
2,691,665	+				-1.9
2,691,666	-				+0.5
2,691,666	-				+2.3
2,691,666	-				-0.6
2,691,666	-				+1.3
2,691,724	+				+0.0
2,691,725	-				-1.0
2,691,725	-				+0.1
2,691,803	-				+1.3
2,691,803	-				-3.2
2,691,803	-				-0.1
2,691,810	+				-1.3
2,691,810	+				-0.7
2,691,811	-				-1.7
2,691,830	-				+0.3
2,691,837	+				+1.5
2,691,850	+				+0.4
2,691,850	+				+2.1
2,691,850	+				-1.3
2,691,850	+				+0.6
2,691,859	-				-1.3
2,691,909	-				+0.7
2,691,910	+				-0.4
2,691,911	-				-2.1
2,691,911	-				-0.7
2,691,911	-				+0.3
2,691,911	-				+0.7
2,691,916	+				-0.6
2,691,920	+				+0.9
2,691,920	+				-0.3
2,691,921	-				+1.7
2,691,921	-				+0.9
2,691,921	-				+0.7
2,691,921	-				+1.4
2,691,965	+				-0.3
2,691,966	-				-1.6
2,691,970	+				-1.2
2,691,970	+				+0.4
2,691,970	+				+1.2
2,691,971	-				-1.1
2,691,971	-				-1.9
2,691,971	-				+0.3
2,691,973	+				-0.6
2,691,973	+				-0.9
2,691,973	+				+2.5
2,691,974	-				+0.7
2,691,974	-				+1.8
2,691,974	-				-0.7
2,691,974	-				-0.6
2,692,009	+				+0.2
2,692,009	+				-1.3
2,692,009	+				+2.2
2,692,009	+				+1.6
2,692,029	+				-2.3
2,692,030	-				+0.7
2,692,030	-				-2.1
2,692,044	-		IAI47_12780	0.11	+0.7
2,692,074	+		IAI47_12780	0.12	+2.1
2,692,075	-		IAI47_12780	0.12	-1.6
2,692,075	-		IAI47_12780	0.12	-0.0
2,692,077	+		IAI47_12780	0.13	+0.5
2,692,078	-		IAI47_12780	0.13	-1.0
2,692,100	+		IAI47_12780	0.14	+1.8
2,692,100	+		IAI47_12780	0.14	-1.7
2,692,100	+		IAI47_12780	0.14	-0.4
2,692,100	+		IAI47_12780	0.14	-1.4
2,692,101	-		IAI47_12780	0.14	-2.5
2,692,154	+		IAI47_12780	0.17	+0.7
2,692,154	+		IAI47_12780	0.17	+3.3
2,692,155	-		IAI47_12780	0.17	-1.4
2,692,177	+		IAI47_12780	0.18	-0.3
2,692,177	+		IAI47_12780	0.18	-2.0
2,692,177	+		IAI47_12780	0.18	-1.3
2,692,177	+		IAI47_12780	0.18	-0.9
2,692,178	-		IAI47_12780	0.18	-0.7
2,692,178	-		IAI47_12780	0.18	-0.4
2,692,178	-		IAI47_12780	0.18	+2.2
2,692,178	-		IAI47_12780	0.18	-1.7
2,692,199	+		IAI47_12780	0.19	+0.3
2,692,199	+		IAI47_12780	0.19	-3.0
2,692,200	-		IAI47_12780	0.19	+1.4
2,692,200	-		IAI47_12780	0.19	-0.8
2,692,202	+		IAI47_12780	0.19	+1.9
2,692,202	+		IAI47_12780	0.19	-1.0
2,692,202	+		IAI47_12780	0.19	-2.1
2,692,202	+		IAI47_12780	0.19	-0.3
2,692,203	-		IAI47_12780	0.20	+1.7
2,692,203	-		IAI47_12780	0.20	-1.1
2,692,208	+		IAI47_12780	0.20	+0.1
2,692,208	+		IAI47_12780	0.20	+2.6
2,692,209	-		IAI47_12780	0.20	-0.8
2,692,209	-		IAI47_12780	0.20	-0.2
2,692,210	+		IAI47_12780	0.20	-0.9
2,692,280	+		IAI47_12780	0.24	+0.9
2,692,280	+		IAI47_12780	0.24	+2.5
2,692,280	+		IAI47_12780	0.24	-1.7
2,692,281	-		IAI47_12780	0.24	-1.6
2,692,281	-		IAI47_12780	0.24	+1.2
2,692,281	-		IAI47_12780	0.24	+0.4
2,692,343	+		IAI47_12780	0.27	+1.0
2,692,343	+		IAI47_12780	0.27	-2.0
2,692,343	+		IAI47_12780	0.27	+2.2
2,692,344	-		IAI47_12780	0.27	+1.0
2,692,344	-		IAI47_12780	0.27	-0.3
2,692,345	+		IAI47_12780	0.27	-1.3
2,692,346	-		IAI47_12780	0.27	-2.7
2,692,346	-		IAI47_12780	0.27	+1.9
2,692,346	-		IAI47_12780	0.27	-0.6
2,692,357	+		IAI47_12780	0.28	-1.1
2,692,357	+		IAI47_12780	0.28	-0.2
2,692,357	+		IAI47_12780	0.28	+0.9
2,692,357	+		IAI47_12780	0.28	-0.6
2,692,357	+		IAI47_12780	0.28	-0.6
2,692,357	+		IAI47_12780	0.28	+0.4
2,692,357	+		IAI47_12780	0.28	-1.7
2,692,357	+		IAI47_12780	0.28	-2.1
2,692,358	-		IAI47_12780	0.28	-1.9
2,692,358	-		IAI47_12780	0.28	-0.3
2,692,358	-		IAI47_12780	0.28	+1.7
2,692,358	-		IAI47_12780	0.28	+3.1
2,692,358	-		IAI47_12780	0.28	+0.4
2,692,358	-		IAI47_12780	0.28	+0.3
2,692,363	+		IAI47_12780	0.28	+0.1
2,692,363	+		IAI47_12780	0.28	-1.7
2,692,364	-		IAI47_12780	0.28	-1.7
2,692,364	-		IAI47_12780	0.28	-1.9
2,692,364	-		IAI47_12780	0.28	-3.0
2,692,364	-		IAI47_12780	0.28	+1.5
2,692,364	-		IAI47_12780	0.28	-1.1
2,692,364	-		IAI47_12780	0.28	-0.3
2,692,391	+		IAI47_12780	0.30	+0.5
2,692,392	-		IAI47_12780	0.30	+0.3
2,692,392	-		IAI47_12780	0.30	-2.0
2,692,392	-		IAI47_12780	0.30	-1.7
2,692,394	+		IAI47_12780	0.30	-2.0
2,692,395	-		IAI47_12780	0.30	-1.6
2,692,448	+		IAI47_12780	0.33	+0.7
2,692,448	+		IAI47_12780	0.33	+0.9
2,692,448	+		IAI47_12780	0.33	-0.4
2,692,448	+		IAI47_12780	0.33	+2.1
2,692,448	+		IAI47_12780	0.33	-0.6
2,692,449	-		IAI47_12780	0.33	-0.3
2,692,449	-		IAI47_12780	0.33	+0.7
2,692,520	+		IAI47_12780	0.37	+0.9
2,692,520	+		IAI47_12780	0.37	+1.8
2,692,521	-		IAI47_12780	0.37	-0.9
2,692,521	-		IAI47_12780	0.37	+0.5
2,692,534	-		IAI47_12780	0.38	-1.1
2,692,537	+		IAI47_12780	0.38	+1.8
2,692,538	-		IAI47_12780	0.38	+0.4
2,692,549	+		IAI47_12780	0.39	+1.0
2,692,549	+		IAI47_12780	0.39	+1.0
2,692,550	-		IAI47_12780	0.39	+0.6
2,692,550	-		IAI47_12780	0.39	+1.2
2,692,550	-		IAI47_12780	0.39	+0.1
2,692,583	+		IAI47_12780	0.41	+0.1
2,692,584	-		IAI47_12780	0.41	+0.3
2,692,656	-		IAI47_12780	0.45	+0.6
2,692,656	-		IAI47_12780	0.45	+0.3