Strain Fitness in Pantoea sp. MT58 around IAI47_11405

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,409,539	+		IAI47_11395	0.28	-2.3
2,409,539	+		IAI47_11395	0.28	+1.1
2,409,540	-		IAI47_11395	0.28	+2.0
2,409,540	-		IAI47_11395	0.28	+0.5
2,409,540	-		IAI47_11395	0.28	-3.4
2,409,552	-		IAI47_11395	0.31	+1.7
2,409,572	+		IAI47_11395	0.37	-0.8
2,409,572	+		IAI47_11395	0.37	-2.3
2,409,573	-		IAI47_11395	0.37	+2.3
2,409,573	-		IAI47_11395	0.37	-2.0
2,409,579	-		IAI47_11395	0.39	-1.6
2,409,579	-		IAI47_11395	0.39	-0.1
2,409,579	-		IAI47_11395	0.39	-1.4
2,409,579	-		IAI47_11395	0.39	-2.3
2,409,580	+		IAI47_11395	0.39	+1.8
2,409,581	-		IAI47_11395	0.39	+0.7
2,409,674	+		IAI47_11395	0.65	-0.3
2,409,675	-		IAI47_11395	0.65	+1.7
2,409,681	+		IAI47_11395	0.67	+0.7
2,409,681	+		IAI47_11395	0.67	-2.5
2,409,682	-		IAI47_11395	0.67	+0.6
2,409,682	-		IAI47_11395	0.67	-0.9
2,409,687	+		IAI47_11395	0.68	-2.0
2,409,687	+		IAI47_11395	0.68	+1.2
2,409,688	-		IAI47_11395	0.69	+1.5
2,409,688	-		IAI47_11395	0.69	-0.6
2,409,744	+		IAI47_11395	0.84	+0.7
2,409,745	-		IAI47_11395	0.84	-0.2
2,409,782	-				-2.4
2,409,801	+				+1.0
2,409,801	+				-2.4
2,409,805	+				-0.3
2,409,806	-				+3.4
2,409,806	-				-1.1
2,409,843	+				+1.5
2,409,844	-				+1.2
2,409,844	-				+0.9
2,409,851	-				-0.2
2,409,851	-				-0.3
2,409,870	+				+0.1
2,409,914	+				+2.3
2,409,915	-				-1.9
2,409,917	+				-0.8
2,409,917	+				-1.1
2,409,918	-				-0.2
2,409,974	-		IAI47_11400	0.15	-0.5
2,409,976	+		IAI47_11400	0.16	+1.1
2,409,976	+		IAI47_11400	0.16	+1.1
2,409,977	-		IAI47_11400	0.16	-0.1
2,409,978	+		IAI47_11400	0.16	-2.4
2,409,978	+		IAI47_11400	0.16	-2.2
2,409,978	+		IAI47_11400	0.16	+0.9
2,410,021	+		IAI47_11400	0.24	-1.9
2,410,021	+		IAI47_11400	0.24	-1.6
2,410,022	-		IAI47_11400	0.24	-1.3
2,410,022	-		IAI47_11400	0.24	+3.1
2,410,022	-		IAI47_11400	0.24	+3.4
2,410,025	+		IAI47_11400	0.24	-1.0
2,410,025	+		IAI47_11400	0.24	+1.9
2,410,026	-		IAI47_11400	0.25	-1.3
2,410,109	+		IAI47_11400	0.39	+1.7
2,410,109	+		IAI47_11400	0.39	+0.7
2,410,110	-		IAI47_11400	0.40	-1.1
2,410,110	-		IAI47_11400	0.40	-1.1
2,410,114	+		IAI47_11400	0.40	+1.6
2,410,114	+		IAI47_11400	0.40	-0.9
2,410,114	+		IAI47_11400	0.40	+0.3
2,410,114	+		IAI47_11400	0.40	+0.7
2,410,115	-		IAI47_11400	0.40	-0.9
2,410,115	-		IAI47_11400	0.40	+2.9
2,410,115	-		IAI47_11400	0.40	-1.5
2,410,162	+		IAI47_11400	0.49	+0.7
2,410,163	-		IAI47_11400	0.49	-0.8
2,410,180	+		IAI47_11400	0.52	+0.3
2,410,180	+		IAI47_11400	0.52	-0.6
2,410,180	+		IAI47_11400	0.52	-0.9
2,410,181	-		IAI47_11400	0.52	-1.6
2,410,181	-		IAI47_11400	0.52	-0.8
2,410,181	-		IAI47_11400	0.52	+1.5
2,410,181	-		IAI47_11400	0.52	-0.4
2,410,192	+		IAI47_11400	0.54	-0.5
2,410,192	+		IAI47_11400	0.54	-1.6
2,410,193	-		IAI47_11400	0.54	-2.6
2,410,193	-		IAI47_11400	0.54	-0.2
2,410,196	-		IAI47_11400	0.55	+0.4
2,410,196	-		IAI47_11400	0.55	-0.3
2,410,196	-		IAI47_11400	0.55	-0.3
2,410,196	-		IAI47_11400	0.55	-0.3
2,410,196	-		IAI47_11400	0.55	+0.5
2,410,196	-		IAI47_11400	0.55	-0.9
2,410,196	-		IAI47_11400	0.55	+0.1
2,410,196	-		IAI47_11400	0.55	+0.0
2,410,199	+		IAI47_11400	0.55	+1.7
2,410,199	+		IAI47_11400	0.55	-1.1
2,410,199	+		IAI47_11400	0.55	-1.8
2,410,200	-		IAI47_11400	0.56	+2.1
2,410,200	-		IAI47_11400	0.56	-2.3
2,410,200	-		IAI47_11400	0.56	+0.7
2,410,200	-		IAI47_11400	0.56	-1.6
2,410,200	-		IAI47_11400	0.56	-1.0
2,410,200	-		IAI47_11400	0.56	+1.4
2,410,200	-		IAI47_11400	0.56	-0.7
2,410,201	+		IAI47_11400	0.56	+4.4
2,410,201	+		IAI47_11400	0.56	+0.2
2,410,201	+		IAI47_11400	0.56	-0.7
2,410,202	-		IAI47_11400	0.56	+3.4
2,410,286	+		IAI47_11400	0.71	-1.1
2,410,286	+		IAI47_11400	0.71	-2.1
2,410,286	+		IAI47_11400	0.71	+1.7
2,410,293	+		IAI47_11400	0.72	+0.3
2,410,293	+		IAI47_11400	0.72	-0.3
2,410,293	+		IAI47_11400	0.72	-2.0
2,410,294	-		IAI47_11400	0.72	-2.8
2,410,294	-		IAI47_11400	0.72	-1.5
2,410,298	+		IAI47_11400	0.73	-1.8
2,410,299	-		IAI47_11400	0.73	-1.8
2,410,299	-		IAI47_11400	0.73	-0.6
2,410,325	+		IAI47_11400	0.78	+0.1
2,410,341	+		IAI47_11400	0.81	-0.6
2,410,387	-		IAI47_11400	0.89	+0.1
2,410,463	+				-2.1
2,410,478	-				-0.7
2,410,478	-				-1.3
2,410,484	+				+1.7
2,410,485	-				-0.5
2,410,554	+				+3.3
2,410,554	+				+1.7
2,410,569	-				-2.6
2,410,569	-				-0.2
2,410,609	-				+1.5
2,410,617	+				-2.5
2,410,618	-				+0.4
2,410,641	+				-0.9
2,410,642	-				+1.2
2,410,648	+				+0.7
2,410,648	+				-2.6
2,410,649	-				+0.0
2,410,657	-				-1.3
2,410,701	+				-1.6
2,410,702	-				-0.6
2,410,702	-				-0.3
2,410,703	+				-1.2
2,410,703	+				+0.1
2,410,703	+				+1.1
2,410,703	+				+0.1
2,410,703	+				-0.9
2,410,703	+				-1.3
2,410,704	-				+0.4
2,410,704	-				+0.1
2,410,704	-				+0.0
2,410,709	+				+0.3
2,410,709	+				+0.7
2,410,709	+				+1.4
2,410,709	+				+0.8
2,410,709	+				+0.9
2,410,709	+				+1.1
2,410,709	+				-1.1
2,410,709	+				+1.7
2,410,709	+				+0.3
2,410,709	+				-0.4
2,410,709	+				+0.3
2,410,709	+				-0.1
2,410,709	+				+3.4
2,410,709	+				+1.6
2,410,709	+				-1.5
2,410,710	-				+1.5
2,410,710	-				-0.1
2,410,710	-				-0.9
2,410,710	-				-2.2
2,410,710	-				+1.0
2,410,710	-				-0.8
2,410,710	-				+0.4
2,410,710	-				-0.3
2,410,710	-				+1.4
2,410,710	-				+1.7
2,410,710	-				-1.7
2,410,710	-				+0.6
2,410,710	-				-0.5
2,410,710	-				+2.4
2,410,710	-				-1.6
2,410,713	+				-0.8
2,410,713	+				+0.7
2,410,713	+				-0.8
2,410,713	+				-1.8
2,410,714	-				-0.3
2,410,714	-				+0.7
2,410,714	-				+0.5
2,410,714	-				+1.2
2,410,757	+		IAI47_11405	0.11	+2.8
2,410,757	+		IAI47_11405	0.11	+0.8
2,410,757	+		IAI47_11405	0.11	-0.6
2,410,757	+		IAI47_11405	0.11	-0.0
2,410,757	+		IAI47_11405	0.11	+1.4
2,410,757	+		IAI47_11405	0.11	+0.7
2,410,757	+		IAI47_11405	0.11	-0.6
2,410,757	+		IAI47_11405	0.11	-0.4
2,410,757	+		IAI47_11405	0.11	-2.0
2,410,758	-				+1.7
2,410,758	-		IAI47_11405	0.11	+0.9
2,410,758	-		IAI47_11405	0.11	-0.3
2,410,758	-		IAI47_11405	0.11	-1.5
2,410,758	-		IAI47_11405	0.11	-0.1
2,410,758	-		IAI47_11405	0.11	+0.9
2,410,758	-		IAI47_11405	0.11	-0.5
2,410,758	-		IAI47_11405	0.11	-0.3
2,410,758	-		IAI47_11405	0.11	+0.5
2,410,758	-		IAI47_11405	0.11	+1.5
2,410,758	-		IAI47_11405	0.11	-1.4
2,410,758	-		IAI47_11405	0.11	-2.2
2,410,758	-		IAI47_11405	0.11	+2.8
2,410,758	-		IAI47_11405	0.11	-1.3
2,410,761	+		IAI47_11405	0.11	-1.6
2,410,761	+		IAI47_11405	0.11	+1.2
2,410,761	+		IAI47_11405	0.11	+1.4
2,410,761	+		IAI47_11405	0.11	-2.7
2,410,761	+		IAI47_11405	0.11	-1.6
2,410,762	-		IAI47_11405	0.11	-1.5
2,410,762	-		IAI47_11405	0.11	-0.9
2,410,762	-		IAI47_11405	0.11	-1.3
2,410,762	-		IAI47_11405	0.11	+1.7
2,410,762	-		IAI47_11405	0.11	-1.0
2,410,762	-		IAI47_11405	0.11	-2.5
2,410,762	-		IAI47_11405	0.11	+0.2
2,410,767	-		IAI47_11405	0.11	+0.5
2,410,767	-		IAI47_11405	0.11	-0.3
2,410,797	+		IAI47_11405	0.12	-1.8
2,410,797	+		IAI47_11405	0.12	-1.5
2,410,797	+		IAI47_11405	0.12	-0.9
2,410,798	-		IAI47_11405	0.12	+0.9
2,410,798	-		IAI47_11405	0.12	+0.3
2,410,798	-		IAI47_11405	0.12	-0.3
2,410,801	+		IAI47_11405	0.12	+0.5
2,410,802	-		IAI47_11405	0.13	+2.3
2,410,802	-		IAI47_11405	0.13	+1.1
2,410,850	+		IAI47_11405	0.14	+1.1
2,410,866	+		IAI47_11405	0.15	-0.6
2,410,866	+		IAI47_11405	0.15	-0.8
2,410,866	+		IAI47_11405	0.15	+0.1
2,410,869	-		IAI47_11405	0.15	+1.0
2,410,869	-		IAI47_11405	0.15	-0.6
2,410,869	-		IAI47_11405	0.15	-0.1
2,410,889	+		IAI47_11405	0.16	+0.2
2,410,889	+		IAI47_11405	0.16	-0.7
2,410,889	+		IAI47_11405	0.16	-1.8
2,410,890	-		IAI47_11405	0.16	+1.0
2,410,920	+		IAI47_11405	0.17	+0.0
2,410,941	+		IAI47_11405	0.18	-0.8
2,410,941	+		IAI47_11405	0.18	-1.0
2,410,941	+		IAI47_11405	0.18	+0.8
2,410,942	-		IAI47_11405	0.18	-0.4
2,410,942	-		IAI47_11405	0.18	+0.6
2,410,942	-		IAI47_11405	0.18	-0.2
2,410,942	-		IAI47_11405	0.18	+0.3
2,410,953	+		IAI47_11405	0.18	+0.1
2,410,988	+		IAI47_11405	0.19	-1.6
2,410,989	-		IAI47_11405	0.19	+0.9
2,411,027	+		IAI47_11405	0.21	+2.6
2,411,038	-		IAI47_11405	0.21	+0.8
2,411,038	-		IAI47_11405	0.21	-1.6
2,411,056	+		IAI47_11405	0.22	-2.0
2,411,077	-		IAI47_11405	0.23	+1.3
2,411,100	+		IAI47_11405	0.23	+3.9
2,411,144	+		IAI47_11405	0.25	+1.1
2,411,144	+		IAI47_11405	0.25	+3.7
2,411,144	+		IAI47_11405	0.25	+0.3
2,411,144	+		IAI47_11405	0.25	-0.4
2,411,144	+		IAI47_11405	0.25	-1.1
2,411,144	+		IAI47_11405	0.25	-0.6
2,411,144	+		IAI47_11405	0.25	+0.4
2,411,144	+		IAI47_11405	0.25	+1.3
2,411,145	-		IAI47_11405	0.25	-0.3
2,411,145	-		IAI47_11405	0.25	-0.6
2,411,145	-		IAI47_11405	0.25	-1.3
2,411,145	-		IAI47_11405	0.25	+0.9
2,411,145	-		IAI47_11405	0.25	+2.1
2,411,145	-		IAI47_11405	0.25	-0.4
2,411,263	+		IAI47_11405	0.29	-2.8
2,411,263	+		IAI47_11405	0.29	-1.1
2,411,263	+		IAI47_11405	0.29	-0.2
2,411,264	-		IAI47_11405	0.30	-1.1
2,411,264	-		IAI47_11405	0.30	-2.8
2,411,316	+		IAI47_11405	0.31	-0.4
2,411,349	+		IAI47_11405	0.33	-1.0
2,411,373	+		IAI47_11405	0.34	-0.0
2,411,374	-		IAI47_11405	0.34	-2.9
2,411,374	-		IAI47_11405	0.34	-0.3
2,411,374	-		IAI47_11405	0.34	-0.3
2,411,398	-		IAI47_11405	0.34	-1.8
2,411,418	+		IAI47_11405	0.35	-1.1
2,411,419	-		IAI47_11405	0.35	+1.1
2,411,419	-		IAI47_11405	0.35	-0.5
2,411,421	+		IAI47_11405	0.35	-1.3
2,411,421	+		IAI47_11405	0.35	-0.8
2,411,478	+		IAI47_11405	0.37	+1.2
2,411,478	+		IAI47_11405	0.37	-1.8
2,411,479	-		IAI47_11405	0.37	-2.3
2,411,498	+		IAI47_11405	0.38	+1.4
2,411,498	+		IAI47_11405	0.38	+1.1
2,411,498	+		IAI47_11405	0.38	-2.2
2,411,498	+		IAI47_11405	0.38	+1.3
2,411,498	+		IAI47_11405	0.38	-1.9
2,411,498	+		IAI47_11405	0.38	-0.2
2,411,498	+		IAI47_11405	0.38	-1.1
2,411,498	+		IAI47_11405	0.38	+3.3
2,411,498	+		IAI47_11405	0.38	-0.2
2,411,498	+		IAI47_11405	0.38	-1.2
2,411,498	+		IAI47_11405	0.38	-2.1
2,411,498	+		IAI47_11405	0.38	-0.5
2,411,498	+		IAI47_11405	0.38	-0.6
2,411,498	+		IAI47_11405	0.38	-0.5
2,411,498	+		IAI47_11405	0.38	+0.4
2,411,499	-		IAI47_11405	0.38	-1.5
2,411,499	-		IAI47_11405	0.38	+1.1
2,411,499	-		IAI47_11405	0.38	+0.3
2,411,499	-		IAI47_11405	0.38	-0.3
2,411,499	-		IAI47_11405	0.38	-2.8
2,411,499	-		IAI47_11405	0.38	+0.7
2,411,499	-		IAI47_11405	0.38	-1.3
2,411,499	-		IAI47_11405	0.38	-0.1
2,411,499	-		IAI47_11405	0.38	-0.0
2,411,499	-		IAI47_11405	0.38	+0.6
2,411,499	-		IAI47_11405	0.38	-0.4
2,411,499	-		IAI47_11405	0.38	+0.6
2,411,499	-		IAI47_11405	0.38	-2.5
2,411,499	-		IAI47_11405	0.38	-2.6
2,411,499	-		IAI47_11405	0.38	-2.7
2,411,502	+		IAI47_11405	0.38	-1.3
2,411,503	-		IAI47_11405	0.38	+0.5
2,411,588	+		IAI47_11405	0.41	+1.1
2,411,610	-		IAI47_11405	0.42	+0.9
2,411,610	-		IAI47_11405	0.42	+0.6
2,411,610	-		IAI47_11405	0.42	-0.1
2,411,653	-		IAI47_11405	0.44	-0.9
2,413,164	+				+1.0
2,413,164	+				-1.9
2,413,164	+				+2.3
2,413,201	+				-0.0
2,413,202	-				-1.6
2,413,202	-				+2.3
2,413,242	+				+0.2
2,413,243	-				+0.5
2,413,268	+				+1.1
2,413,268	+				+0.4
2,413,269	-				-1.8
2,413,269	-				+0.7
2,413,272	-				+1.4
2,413,286	+				+0.4
2,413,286	+				-0.0
2,413,286	+				+1.9
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