Strain Fitness in Pantoea sp. MT58 around IAI47_06010

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,225,983	+		IAI47_06000	0.39	+0.7
1,225,984	-		IAI47_06000	0.39	-3.2
1,225,984	-		IAI47_06000	0.39	-0.3
1,225,984	-		IAI47_06000	0.39	-0.5
1,225,984	-		IAI47_06000	0.39	-2.8
1,225,985	+		IAI47_06000	0.40	+0.8
1,225,985	+		IAI47_06000	0.40	+0.1
1,225,985	+		IAI47_06000	0.40	+0.1
1,225,985	+		IAI47_06000	0.40	+2.3
1,225,985	+		IAI47_06000	0.40	-1.7
1,225,985	+		IAI47_06000	0.40	+0.9
1,225,985	+		IAI47_06000	0.40	-2.1
1,225,986	-		IAI47_06000	0.40	+0.8
1,225,986	-		IAI47_06000	0.40	+1.5
1,225,986	-		IAI47_06000	0.40	+0.2
1,225,986	-		IAI47_06000	0.40	-1.0
1,225,986	-		IAI47_06000	0.40	+0.7
1,225,998	+		IAI47_06000	0.45	+0.2
1,225,998	+		IAI47_06000	0.45	-0.0
1,225,998	+		IAI47_06000	0.45	+0.4
1,225,998	+		IAI47_06000	0.45	+1.2
1,225,998	+		IAI47_06000	0.45	-1.7
1,225,998	+		IAI47_06000	0.45	+0.6
1,225,998	+		IAI47_06000	0.45	+2.1
1,225,999	-		IAI47_06000	0.45	+0.1
1,226,025	+		IAI47_06000	0.54	+0.1
1,226,026	-		IAI47_06000	0.55	+1.5
1,226,037	+		IAI47_06000	0.59	+1.6
1,226,037	+		IAI47_06000	0.59	+0.1
1,226,037	+		IAI47_06000	0.59	+0.6
1,226,037	+		IAI47_06000	0.59	+1.2
1,226,037	+		IAI47_06000	0.59	+0.9
1,226,037	+		IAI47_06000	0.59	+2.1
1,226,037	+		IAI47_06000	0.59	+0.3
1,226,038	-		IAI47_06000	0.59	-2.0
1,226,038	-		IAI47_06000	0.59	-1.3
1,226,038	-		IAI47_06000	0.59	+2.6
1,226,038	-		IAI47_06000	0.59	+0.3
1,226,060	+		IAI47_06000	0.67	+1.7
1,226,061	-		IAI47_06000	0.67	-0.3
1,226,061	-		IAI47_06000	0.67	-0.9
1,226,130	+				+0.4
1,226,130	+				+0.7
1,226,131	-				+2.2
1,226,131	-				-0.0
1,226,152	+				+1.2
1,226,165	+				-0.5
1,226,165	+				+0.9
1,226,166	-				-0.1
1,226,166	-				-2.3
1,226,166	-				+0.7
1,226,202	+				-1.3
1,226,202	+				+3.4
1,226,202	+				+2.8
1,226,202	+				+1.4
1,226,202	+				+0.5
1,226,202	+				+1.9
1,226,203	-				+1.5
1,226,203	-				-0.5
1,226,203	-				-0.9
1,226,203	-				-1.0
1,226,203	-				-0.7
1,226,203	-				-2.2
1,226,203	-				+0.7
1,226,203	-				+1.5
1,226,248	+				+0.4
1,226,248	+				-1.3
1,226,248	+				+0.9
1,226,248	+				-0.1
1,226,249	-				-0.1
1,226,249	-				-0.7
1,226,250	+				-0.6
1,226,251	-				+0.1
1,226,251	-				-0.5
1,226,352	+		IAI47_06005	0.20	+0.7
1,226,352	+		IAI47_06005	0.20	+3.8
1,226,353	-		IAI47_06005	0.20	-0.8
1,226,353	-		IAI47_06005	0.20	+1.9
1,226,353	-		IAI47_06005	0.20	+0.4
1,226,353	-		IAI47_06005	0.20	-1.4
1,226,382	+		IAI47_06005	0.24	-1.6
1,226,500	-		IAI47_06005	0.39	+1.3
1,226,589	+		IAI47_06005	0.51	-0.1
1,226,590	-		IAI47_06005	0.51	+0.5
1,226,645	+		IAI47_06005	0.59	-1.6
1,226,646	-		IAI47_06005	0.59	+0.1
1,226,655	+		IAI47_06005	0.60	-2.2
1,226,674	+		IAI47_06005	0.63	+1.2
1,226,674	+		IAI47_06005	0.63	-1.3
1,226,675	-		IAI47_06005	0.63	+0.9
1,226,675	-		IAI47_06005	0.63	+0.6
1,226,675	-		IAI47_06005	0.63	+0.4
1,226,675	-		IAI47_06005	0.63	-0.8
1,226,675	-		IAI47_06005	0.63	-1.3
1,226,675	-		IAI47_06005	0.63	-2.4
1,226,675	-		IAI47_06005	0.63	-2.3
1,226,675	-		IAI47_06005	0.63	-1.1
1,226,675	-		IAI47_06005	0.63	+1.6
1,226,675	-		IAI47_06005	0.63	+1.7
1,226,675	-		IAI47_06005	0.63	-3.2
1,226,751	+		IAI47_06005	0.73	-1.6
1,226,751	+		IAI47_06005	0.73	+1.4
1,226,752	-		IAI47_06005	0.73	+1.5
1,226,775	+		IAI47_06005	0.76	+1.3
1,226,776	-		IAI47_06005	0.76	+2.7
1,226,826	+		IAI47_06005	0.83	+0.7
1,226,827	-		IAI47_06005	0.83	-1.6
1,226,852	+		IAI47_06005	0.86	-2.4
1,226,852	+		IAI47_06005	0.86	-3.1
1,226,853	-		IAI47_06005	0.86	-2.2
1,226,904	+				-0.9
1,226,904	+				+0.7
1,226,904	+				-0.9
1,226,905	-				+1.7
1,226,905	-				-0.3
1,226,905	-				+0.4
1,226,905	-				+1.4
1,226,905	-				+0.1
1,226,910	+				-0.5
1,226,988	+				-0.5
1,226,988	+				+1.8
1,226,988	+				-1.1
1,226,988	+				+1.1
1,226,989	-				+2.4
1,226,989	-				+0.3
1,226,989	-				+2.4
1,226,989	-				+0.2
1,226,989	-				+2.0
1,226,989	-				-0.4
1,226,989	-				-0.4
1,226,989	-				-1.4
1,226,989	-				-3.2
1,227,023	+		IAI47_06010	0.19	-0.6
1,227,023	+		IAI47_06010	0.19	+1.4
1,227,075	+		IAI47_06010	0.34	-2.3
1,227,076	-		IAI47_06010	0.34	+1.0
1,227,153	+		IAI47_06010	0.56	+0.2
1,227,153	+		IAI47_06010	0.56	+1.5
1,227,153	+		IAI47_06010	0.56	-2.6
1,227,153	+		IAI47_06010	0.56	+1.9
1,227,153	+		IAI47_06010	0.56	+0.2
1,227,153	+		IAI47_06010	0.56	-0.6
1,227,154	-		IAI47_06010	0.56	+2.3
1,227,154	-		IAI47_06010	0.56	-1.2
1,227,154	-		IAI47_06010	0.56	-0.2
1,227,154	-		IAI47_06010	0.56	-0.3
1,227,170	+		IAI47_06010	0.61	-1.6
1,227,171	-		IAI47_06010	0.61	+1.7
1,227,179	-		IAI47_06010	0.63	+0.4
1,227,218	+		IAI47_06010	0.74	-0.5
1,227,276	+				-0.4
1,227,277	-				-2.7
1,227,306	+				+0.3
1,227,306	+				+0.6
1,227,306	+				-1.3
1,227,307	-				-2.1
1,227,307	-				+0.1
1,227,363	+				-0.1
1,227,363	+				-1.5
1,227,363	+				-2.8
1,227,363	+				+2.3
1,227,363	+				-0.4
1,227,363	+				+0.7
1,227,363	+				-0.6
1,227,364	-				+1.5
1,227,364	-				-1.5
1,227,364	-				+2.1
1,227,364	-				-0.3
1,227,394	+				+0.7
1,227,395	-				+1.7
1,227,407	+				+0.9
1,227,420	+				+0.8
1,227,420	+				+1.4
1,227,420	+				+1.6
1,227,420	+				+0.7
1,227,421	-				+2.3
1,227,422	+				+1.4
1,227,422	+				-2.0
1,227,422	+				+1.0
1,227,422	+				-1.2
1,227,422	+				+0.2
1,227,422	+				+2.7
1,227,423	-				+1.1
1,227,423	-				-0.6
1,227,423	-				+1.1
1,227,423	-				+0.7
1,227,423	-				-0.5
1,227,423	-				-0.3
1,227,423	-				+0.8
1,227,423	-				+3.0
1,227,423	-				+0.6
1,227,437	+		IAI47_06015	0.11	+0.2
1,227,437	+		IAI47_06015	0.11	+1.4
1,227,437	+		IAI47_06015	0.11	-2.8
1,227,438	-		IAI47_06015	0.11	+1.7
1,227,438	-		IAI47_06015	0.11	+0.3
1,227,454	+		IAI47_06015	0.12	+0.1
1,227,454	+		IAI47_06015	0.12	-2.1
1,227,454	+		IAI47_06015	0.12	-2.8
1,227,454	+		IAI47_06015	0.12	-0.1
1,227,524	+		IAI47_06015	0.18	-1.3
1,227,524	+		IAI47_06015	0.18	-1.0
1,227,524	+		IAI47_06015	0.18	+2.7
1,227,524	+		IAI47_06015	0.18	+3.1
1,227,524	+		IAI47_06015	0.18	+0.3
1,227,525	-		IAI47_06015	0.18	-0.1
1,227,525	-		IAI47_06015	0.18	-0.3
1,227,525	-		IAI47_06015	0.18	-0.9
1,227,525	-		IAI47_06015	0.18	-0.1
1,227,525	-		IAI47_06015	0.18	-1.8
1,227,525	-		IAI47_06015	0.18	+1.2
1,227,525	-		IAI47_06015	0.18	+1.8
1,227,566	-		IAI47_06015	0.21	+2.6
1,227,592	+		IAI47_06015	0.24	+1.4
1,227,592	+		IAI47_06015	0.24	-2.5
1,227,592	+		IAI47_06015	0.24	+0.4
1,227,592	+		IAI47_06015	0.24	-0.6
1,227,593	-		IAI47_06015	0.24	+1.2
1,227,598	+		IAI47_06015	0.24	-0.8
1,227,598	+		IAI47_06015	0.24	+0.7
1,227,599	-		IAI47_06015	0.24	-1.4
1,227,599	-		IAI47_06015	0.24	+0.1
1,227,599	-		IAI47_06015	0.24	-0.3
1,227,611	-		IAI47_06015	0.25	-1.8
1,227,611	-		IAI47_06015	0.25	-1.2
1,227,616	+		IAI47_06015	0.26	-1.6
1,227,617	-		IAI47_06015	0.26	+1.2
1,227,617	-		IAI47_06015	0.26	+2.4
1,227,628	+		IAI47_06015	0.27	+0.4
1,227,628	+		IAI47_06015	0.27	-0.9
1,227,629	-		IAI47_06015	0.27	-0.9
1,227,629	-		IAI47_06015	0.27	+2.2
1,227,629	-		IAI47_06015	0.27	-0.6
1,227,661	+		IAI47_06015	0.29	-1.7
1,227,662	-		IAI47_06015	0.29	+2.4
1,227,662	-		IAI47_06015	0.29	+1.8
1,227,662	-		IAI47_06015	0.29	+1.7
1,227,672	+		IAI47_06015	0.30	-0.1
1,227,714	+		IAI47_06015	0.34	+1.9
1,227,714	+		IAI47_06015	0.34	+0.7
1,227,714	+		IAI47_06015	0.34	-1.4
1,227,714	+		IAI47_06015	0.34	-0.6
1,227,714	+		IAI47_06015	0.34	+1.1
1,227,715	-		IAI47_06015	0.34	+0.1
1,227,715	-		IAI47_06015	0.34	+2.3
1,227,715	-		IAI47_06015	0.34	+1.8
1,227,718	+		IAI47_06015	0.34	-0.9
1,227,718	+		IAI47_06015	0.34	-0.0
1,227,719	-		IAI47_06015	0.34	-1.6
1,227,751	+		IAI47_06015	0.37	-1.5
1,227,751	+		IAI47_06015	0.37	+0.6
1,227,752	-		IAI47_06015	0.37	-0.8
1,227,752	-		IAI47_06015	0.37	-0.1
1,227,761	-		IAI47_06015	0.38	-0.4
1,227,834	+		IAI47_06015	0.44	+0.2
1,227,858	+		IAI47_06015	0.46	+1.5
1,227,858	+		IAI47_06015	0.46	+0.6
1,227,859	-		IAI47_06015	0.46	+2.8
1,227,859	-		IAI47_06015	0.46	-0.5
1,227,895	+		IAI47_06015	0.49	-1.0
1,227,895	+		IAI47_06015	0.49	+0.7
1,227,895	+		IAI47_06015	0.49	+1.7
1,227,896	-		IAI47_06015	0.49	+0.7
1,227,975	+		IAI47_06015	0.56	+2.7
1,227,990	+		IAI47_06015	0.57	+2.7
1,227,991	-		IAI47_06015	0.57	+3.4
1,227,991	-		IAI47_06015	0.57	+1.5
1,227,991	-		IAI47_06015	0.57	-3.0
1,227,991	-		IAI47_06015	0.57	-2.5
1,227,991	-		IAI47_06015	0.57	-1.1
1,227,992	+		IAI47_06015	0.57	+1.4
1,227,992	+		IAI47_06015	0.57	-0.8
1,227,993	-		IAI47_06015	0.57	+1.5
1,228,004	-		IAI47_06015	0.58	-0.5
1,228,014	+		IAI47_06015	0.59	-0.2
1,228,146	+		IAI47_06015	0.70	+1.8
1,228,153	+		IAI47_06015	0.70	-0.1
1,228,153	+		IAI47_06015	0.70	+1.9
1,228,157	+		IAI47_06015	0.71	+2.4
1,228,157	+		IAI47_06015	0.71	-1.0
1,228,158	-		IAI47_06015	0.71	-2.9
1,228,158	-		IAI47_06015	0.71	+0.2
1,228,158	-		IAI47_06015	0.71	+2.1
1,228,159	-		IAI47_06015	0.71	-0.6
1,228,176	+		IAI47_06015	0.72	+0.1
1,228,176	+		IAI47_06015	0.72	-0.5
1,228,176	+		IAI47_06015	0.72	+1.5
1,228,176	+		IAI47_06015	0.72	-2.6
1,228,176	+		IAI47_06015	0.72	+0.8
1,228,176	+		IAI47_06015	0.72	+0.1
1,228,177	-		IAI47_06015	0.72	-0.3
1,228,177	-		IAI47_06015	0.72	-2.9
1,228,177	-		IAI47_06015	0.72	+3.3
1,228,177	-		IAI47_06015	0.72	-0.6
1,228,177	-		IAI47_06015	0.72	-2.0
1,228,177	-		IAI47_06015	0.72	+2.0
1,228,177	-		IAI47_06015	0.72	+2.4
1,228,177	-		IAI47_06015	0.72	+2.0
1,228,177	-		IAI47_06015	0.72	+1.1
1,228,206	+		IAI47_06015	0.75	-0.7
1,228,206	+		IAI47_06015	0.75	+1.0
1,228,206	+		IAI47_06015	0.75	+0.3
1,228,207	-		IAI47_06015	0.75	+2.5
1,228,207	-		IAI47_06015	0.75	+2.7
1,228,207	-		IAI47_06015	0.75	+1.2
1,228,207	-		IAI47_06015	0.75	-2.1
1,228,208	+		IAI47_06015	0.75	-0.0
1,228,208	+		IAI47_06015	0.75	-1.8
1,228,208	+		IAI47_06015	0.75	+2.5
1,228,208	+		IAI47_06015	0.75	-0.3
1,228,208	+		IAI47_06015	0.75	-1.3
1,228,208	+		IAI47_06015	0.75	+0.5
1,228,208	+		IAI47_06015	0.75	-1.0
1,228,208	+		IAI47_06015	0.75	+0.1
1,228,208	+		IAI47_06015	0.75	+2.3
1,228,209	-		IAI47_06015	0.75	+0.4
1,228,209	-		IAI47_06015	0.75	-1.7
1,228,209	-		IAI47_06015	0.75	+0.2
1,228,209	-		IAI47_06015	0.75	+0.2
1,228,209	-		IAI47_06015	0.75	+1.8
1,228,209	-		IAI47_06015	0.75	+0.3
1,228,209	-		IAI47_06015	0.75	+2.0
1,228,209	-		IAI47_06015	0.75	-1.9
1,228,209	-		IAI47_06015	0.75	+0.3
1,228,209	-		IAI47_06015	0.75	-1.9
1,228,209	-		IAI47_06015	0.75	+0.4
1,228,209	-		IAI47_06015	0.75	-1.0
1,228,209	-		IAI47_06015	0.75	-0.5
1,228,209	-		IAI47_06015	0.75	+0.4
1,228,218	+		IAI47_06015	0.76	+0.9
1,228,219	-		IAI47_06015	0.76	-2.5
1,228,266	+		IAI47_06015	0.80	+2.1
1,228,267	-		IAI47_06015	0.80	+0.2
1,228,267	-		IAI47_06015	0.80	-1.5
1,228,267	-		IAI47_06015	0.80	+1.5
1,228,286	+		IAI47_06015	0.81	+1.5
1,228,292	-		IAI47_06015	0.82	+0.6
1,228,292	-		IAI47_06015	0.82	-2.1