Strain Fitness in Pantoea sp. MT58 around IAI47_05935

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,216,440	-				+0.3
1,216,440	-				-1.9
1,216,440	-				-0.5
1,216,440	-				-0.1
1,216,449	-				+1.5
1,216,449	-				+0.1
1,216,449	-				+0.9
1,216,464	+				-3.0
1,216,464	+				+1.7
1,216,465	-				+3.8
1,216,465	-				+0.1
1,216,465	-				+1.8
1,216,465	-				-0.6
1,216,465	-				+2.5
1,216,471	-				+0.5
1,216,471	-				+1.1
1,216,564	+		IAI47_05930	0.11	+2.8
1,216,564	+		IAI47_05930	0.11	+1.8
1,216,564	+		IAI47_05930	0.11	-2.0
1,216,565	-		IAI47_05930	0.11	+1.5
1,216,565	-		IAI47_05930	0.11	+1.0
1,216,565	-		IAI47_05930	0.11	-0.3
1,216,565	-		IAI47_05930	0.11	-0.7
1,216,581	+		IAI47_05930	0.12	+0.9
1,216,605	+		IAI47_05930	0.15	+1.9
1,216,605	+		IAI47_05930	0.15	-2.9
1,216,606	-		IAI47_05930	0.15	+1.9
1,216,662	+		IAI47_05930	0.21	-1.2
1,216,662	+		IAI47_05930	0.21	-1.3
1,216,663	-		IAI47_05930	0.21	+3.3
1,216,663	-		IAI47_05930	0.21	-2.7
1,216,731	+		IAI47_05930	0.28	+0.3
1,216,882	+		IAI47_05930	0.44	+1.2
1,216,882	+		IAI47_05930	0.44	+0.7
1,216,883	-		IAI47_05930	0.45	+1.7
1,216,920	+		IAI47_05930	0.48	+0.4
1,216,920	+		IAI47_05930	0.48	-0.9
1,216,921	-		IAI47_05930	0.49	-0.3
1,216,921	-		IAI47_05930	0.49	-2.3
1,216,921	-		IAI47_05930	0.49	-1.5
1,216,921	-		IAI47_05930	0.49	+2.7
1,216,921	-		IAI47_05930	0.49	+1.8
1,216,924	+		IAI47_05930	0.49	+2.4
1,216,925	-		IAI47_05930	0.49	+3.1
1,216,971	+		IAI47_05930	0.54	+2.9
1,216,971	+		IAI47_05930	0.54	-2.0
1,216,971	+		IAI47_05930	0.54	-1.0
1,216,972	-		IAI47_05930	0.54	-0.3
1,217,035	+		IAI47_05930	0.61	+0.0
1,217,035	+		IAI47_05930	0.61	+0.8
1,217,036	-		IAI47_05930	0.61	-2.6
1,217,134	+		IAI47_05930	0.71	+2.1
1,217,134	+		IAI47_05930	0.71	+0.9
1,217,134	+		IAI47_05930	0.71	+0.8
1,217,134	+		IAI47_05930	0.71	-0.5
1,217,135	-		IAI47_05930	0.71	-1.3
1,217,245	+		IAI47_05930	0.83	-1.2
1,217,245	+		IAI47_05930	0.83	+0.9
1,217,246	-		IAI47_05930	0.83	+0.3
1,217,246	-		IAI47_05930	0.83	+0.8
1,217,246	-		IAI47_05930	0.83	+0.6
1,217,246	-		IAI47_05930	0.83	-0.1
1,217,246	-		IAI47_05930	0.83	-1.4
1,217,257	-		IAI47_05930	0.84	+0.1
1,217,257	-		IAI47_05930	0.84	-0.5
1,217,257	-		IAI47_05930	0.84	+0.4
1,217,257	-		IAI47_05930	0.84	+2.5
1,217,321	-				+0.5
1,217,335	+				+0.1
1,217,335	+				-0.4
1,217,335	+				-1.5
1,217,335	+				+1.8
1,217,335	+				+0.5
1,217,335	+				-2.6
1,217,336	-				+0.5
1,217,336	-				-0.3
1,217,336	-				+3.0
1,217,336	-				+3.2
1,217,336	-				+0.1
1,217,336	-				-2.0
1,217,339	-				+2.2
1,217,339	-				-2.4
1,217,386	+				+0.5
1,217,386	+				+0.8
1,217,386	+				-1.5
1,217,386	+				-0.9
1,217,386	+				-0.4
1,217,386	+				+0.9
1,217,387	-				-0.2
1,217,387	-				-0.1
1,217,387	-				-0.6
1,217,387	-				+0.9
1,217,387	-				-0.9
1,217,388	+				-0.4
1,217,388	+				+1.7
1,217,388	+				-0.4
1,217,388	+				-0.2
1,217,389	-				-0.6
1,217,389	-				-0.0
1,217,389	-				-0.2
1,217,389	-				-1.2
1,217,389	-				+0.9
1,217,401	+				+0.9
1,217,401	+				+0.8
1,217,401	+				+0.4
1,217,402	-				+0.5
1,217,402	-				-1.1
1,217,406	+				+1.6
1,217,407	-				-1.0
1,217,407	-				-3.1
1,217,428	-				+1.5
1,217,428	-				+1.4
1,217,438	+				+1.2
1,217,438	+				+0.1
1,217,438	+				+1.7
1,217,439	-				-0.1
1,217,439	-				+0.1
1,217,439	-				-1.0
1,217,439	-				-0.1
1,217,439	-				-1.3
1,217,439	-				+0.3
1,217,446	-				-1.6
1,217,476	-				+2.5
1,217,476	-				+0.5
1,217,497	-		IAI47_05935	0.15	+1.6
1,217,531	+		IAI47_05935	0.24	+0.1
1,217,531	+		IAI47_05935	0.24	+1.5
1,217,531	+		IAI47_05935	0.24	-0.6
1,217,531	+		IAI47_05935	0.24	-1.1
1,217,531	+		IAI47_05935	0.24	+0.7
1,217,532	-		IAI47_05935	0.24	-1.6
1,217,532	-		IAI47_05935	0.24	-0.6
1,217,532	-		IAI47_05935	0.24	-0.5
1,217,532	-		IAI47_05935	0.24	-0.0
1,217,532	-		IAI47_05935	0.24	-0.9
1,217,532	-		IAI47_05935	0.24	+1.1
1,217,532	-		IAI47_05935	0.24	+1.0
1,217,532	-		IAI47_05935	0.24	-0.2
1,217,532	-		IAI47_05935	0.24	+1.2
1,217,664	+		IAI47_05935	0.59	+1.4
1,217,664	+		IAI47_05935	0.59	+0.7
1,217,664	+		IAI47_05935	0.59	-1.3
1,217,664	+		IAI47_05935	0.59	-1.2
1,217,664	+		IAI47_05935	0.59	+1.1
1,217,664	+		IAI47_05935	0.59	-1.6
1,217,664	+		IAI47_05935	0.59	+1.1
1,217,665	-		IAI47_05935	0.59	+1.5
1,217,665	-		IAI47_05935	0.59	-2.5
1,217,665	-		IAI47_05935	0.59	-0.1
1,217,665	-		IAI47_05935	0.59	-1.4
1,217,665	-		IAI47_05935	0.59	-2.2
1,217,665	-		IAI47_05935	0.59	-0.5
1,217,665	-		IAI47_05935	0.59	+1.2
1,217,688	-		IAI47_05935	0.65	+0.5
1,217,688	-		IAI47_05935	0.65	-0.5
1,217,688	-		IAI47_05935	0.65	+0.1
1,217,688	-		IAI47_05935	0.65	-0.5
1,217,779	-		IAI47_05935	0.89	-1.8
1,217,814	+				-0.3
1,217,814	+				+2.8
1,217,815	-				+1.6
1,217,815	-				-2.7
1,217,815	-				-1.0
1,217,815	-				-0.4
1,217,815	-				+1.1
1,217,815	-				-1.5
1,217,815	-				+0.5
1,217,815	-				+2.7
1,217,815	-				+1.1
1,217,815	-				-0.1
1,217,861	+		IAI47_05940	0.19	-0.5
1,217,875	-		IAI47_05940	0.22	+2.6
1,217,875	-		IAI47_05940	0.22	+0.6
1,217,924	-		IAI47_05940	0.34	-0.9
1,217,924	-		IAI47_05940	0.34	+3.9
1,217,932	+		IAI47_05940	0.36	-1.6
1,217,932	+		IAI47_05940	0.36	-0.6
1,217,933	-		IAI47_05940	0.36	+0.1
1,217,933	-		IAI47_05940	0.36	-0.0
1,217,933	-		IAI47_05940	0.36	+1.0
1,217,933	-		IAI47_05940	0.36	+0.7
1,217,933	-		IAI47_05940	0.36	-2.2
1,217,942	+		IAI47_05940	0.39	-1.6
1,217,942	+		IAI47_05940	0.39	+2.2
1,217,942	+		IAI47_05940	0.39	+2.3
1,217,946	+		IAI47_05940	0.40	+0.3
1,217,946	+		IAI47_05940	0.40	+0.9
1,217,946	+		IAI47_05940	0.40	-1.0
1,217,946	+		IAI47_05940	0.40	-0.3
1,217,946	+		IAI47_05940	0.40	+1.7
1,217,946	+		IAI47_05940	0.40	+0.1
1,217,946	+		IAI47_05940	0.40	-0.6
1,217,946	+		IAI47_05940	0.40	+0.1
1,217,946	+		IAI47_05940	0.40	-1.0
1,217,946	+		IAI47_05940	0.40	+4.0
1,217,946	+		IAI47_05940	0.40	+1.5
1,217,946	+		IAI47_05940	0.40	+1.3
1,217,946	+		IAI47_05940	0.40	-0.4
1,217,947	-		IAI47_05940	0.40	+3.4
1,217,947	-		IAI47_05940	0.40	+0.0
1,217,947	-		IAI47_05940	0.40	+0.3
1,217,947	-		IAI47_05940	0.40	-0.2
1,217,947	-		IAI47_05940	0.40	-2.8
1,217,947	-		IAI47_05940	0.40	+0.8
1,217,947	-		IAI47_05940	0.40	+1.4
1,217,947	-		IAI47_05940	0.40	-2.7
1,217,947	-		IAI47_05940	0.40	+1.5
1,217,947	-		IAI47_05940	0.40	-1.3
1,217,949	+		IAI47_05940	0.40	-1.1
1,217,949	+		IAI47_05940	0.40	-0.1
1,217,949	+		IAI47_05940	0.40	-2.2
1,217,949	+		IAI47_05940	0.40	-1.5
1,217,949	+		IAI47_05940	0.40	+0.8
1,217,949	+		IAI47_05940	0.40	+1.3
1,217,949	+		IAI47_05940	0.40	+1.5
1,217,949	+		IAI47_05940	0.40	+2.1
1,217,949	+		IAI47_05940	0.40	+2.9
1,217,950	-		IAI47_05940	0.40	-1.3
1,217,950	-		IAI47_05940	0.40	+0.7
1,217,950	-		IAI47_05940	0.40	+2.5
1,217,950	-		IAI47_05940	0.40	+0.3
1,217,950	-		IAI47_05940	0.40	-0.3
1,217,950	-		IAI47_05940	0.40	+1.7
1,217,969	+		IAI47_05940	0.45	+0.2
1,217,969	+		IAI47_05940	0.45	+1.2
1,217,969	+		IAI47_05940	0.45	+1.4
1,217,969	+		IAI47_05940	0.45	-2.1
1,217,969	+		IAI47_05940	0.45	+0.3
1,217,969	+		IAI47_05940	0.45	-0.5
1,217,969	+		IAI47_05940	0.45	-1.4
1,217,970	-		IAI47_05940	0.45	+1.2
1,217,970	-		IAI47_05940	0.45	-0.4
1,217,970	-		IAI47_05940	0.45	+1.3
1,217,970	-		IAI47_05940	0.45	+2.7
1,217,970	-		IAI47_05940	0.45	-0.2
1,217,970	-		IAI47_05940	0.45	-0.9
1,217,970	-		IAI47_05940	0.45	-1.0
1,217,970	-		IAI47_05940	0.45	+0.7
1,217,970	-		IAI47_05940	0.45	+0.0
1,217,992	+		IAI47_05940	0.51	-0.9
1,217,992	+		IAI47_05940	0.51	-1.4
1,217,992	+		IAI47_05940	0.51	+2.1
1,217,993	-		IAI47_05940	0.51	-3.1
1,218,039	+		IAI47_05940	0.62	-0.4
1,218,039	+		IAI47_05940	0.62	-0.2
1,218,039	+		IAI47_05940	0.62	+0.2
1,218,039	+		IAI47_05940	0.62	+0.9
1,218,039	+		IAI47_05940	0.62	+2.7
1,218,040	-		IAI47_05940	0.63	+0.5
1,218,040	-		IAI47_05940	0.63	-2.5
1,218,077	+		IAI47_05940	0.72	-0.9
1,218,077	+		IAI47_05940	0.72	+2.6
1,218,077	+		IAI47_05940	0.72	-0.5
1,218,077	+		IAI47_05940	0.72	-2.9
1,218,078	-		IAI47_05940	0.72	-1.8
1,218,096	+		IAI47_05940	0.77	+1.1
1,218,097	-		IAI47_05940	0.77	+1.9
1,218,161	+				-0.1
1,218,161	+				+2.9
1,218,171	-				+0.9
1,218,328	-		IAI47_05945	0.28	+2.7
1,218,328	-		IAI47_05945	0.28	+0.4
1,218,336	+		IAI47_05945	0.30	-2.0
1,218,343	+		IAI47_05945	0.31	+0.5
1,218,344	-		IAI47_05945	0.31	+0.9
1,218,344	-		IAI47_05945	0.31	-0.6
1,218,344	-		IAI47_05945	0.31	-1.3
1,218,344	-		IAI47_05945	0.31	+0.2
1,218,344	-		IAI47_05945	0.31	+2.3
1,218,345	+		IAI47_05945	0.31	+1.4
1,218,345	+		IAI47_05945	0.31	-1.5
1,218,346	-		IAI47_05945	0.32	+0.9
1,218,346	-		IAI47_05945	0.32	+1.4
1,218,395	+		IAI47_05945	0.41	-1.2
1,218,395	+		IAI47_05945	0.41	+1.8
1,218,395	+		IAI47_05945	0.41	+2.0
1,218,396	-		IAI47_05945	0.41	+0.7
1,218,427	+		IAI47_05945	0.48	+2.1
1,218,427	+		IAI47_05945	0.48	-0.3
1,218,427	+		IAI47_05945	0.48	-1.3
1,218,428	-		IAI47_05945	0.48	+2.7
1,218,428	-		IAI47_05945	0.48	+1.0
1,218,471	+		IAI47_05945	0.56	-0.9
1,218,472	-		IAI47_05945	0.57	+3.5
1,218,489	+		IAI47_05945	0.60	-1.1
1,218,489	+		IAI47_05945	0.60	-1.4
1,218,538	+		IAI47_05945	0.70	+0.4
1,218,539	-		IAI47_05945	0.70	-3.1
1,218,539	-		IAI47_05945	0.70	-1.0
1,218,613	-		IAI47_05945	0.85	-0.8
1,218,615	+		IAI47_05945	0.85	+2.8
1,218,615	+		IAI47_05945	0.85	+1.9
1,218,615	+		IAI47_05945	0.85	-0.4
1,218,616	-		IAI47_05945	0.85	+0.5
1,218,616	-		IAI47_05945	0.85	-2.5
1,218,616	-		IAI47_05945	0.85	-0.7
1,218,616	-		IAI47_05945	0.85	+5.4
1,218,616	-		IAI47_05945	0.85	+2.4
1,218,641	-				-1.5
1,218,693	+				-2.2
1,218,693	+				-0.7
1,218,693	+				-0.2
1,218,693	+				+0.5
1,218,693	+				+1.2
1,218,693	+				-0.4
1,218,693	+				+0.1
1,218,694	-				+3.0
1,218,694	-				+1.2