Strain Fitness in Pantoea sp. MT58

Strain Fitness in Pantoea sp. MT58 around IAI47_04755

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
				remove
999,543	+	IAI47_04740	0.77	-1.6
999,543	+	IAI47_04740	0.77	-1.4
999,544	-	IAI47_04740	0.77	-2.2
999,544	-	IAI47_04740	0.77	-0.8
999,564	+	IAI47_04740	0.85	-3.7
999,564	+	IAI47_04740	0.85	+2.4
999,564	+	IAI47_04740	0.85	-2.1
999,564	+	IAI47_04740	0.85	-3.3
999,598	+			+2.4
999,598	+			+1.8
999,598	+			-2.8
999,598	+			+0.2
999,598	+			+0.5
999,599	-			+1.8
999,601	+			+0.8
999,601	+			+0.6
999,601	+			-1.2
999,602	-			-0.9
999,602	-			+0.9
999,602	-			+2.0
999,602	-			-0.9
999,602	-			+0.2
999,650	+	IAI47_04745	0.13	-1.1
999,650	+	IAI47_04745	0.13	-2.1
999,651	-	IAI47_04745	0.13	-0.3
999,651	-	IAI47_04745	0.13	+0.7
999,651	-	IAI47_04745	0.13	-1.2
999,699	+	IAI47_04745	0.22	+0.5
999,700	-	IAI47_04745	0.22	+0.8
999,708	+	IAI47_04745	0.23	+0.9
999,708	+	IAI47_04745	0.23	+0.8
999,708	+	IAI47_04745	0.23	-1.6
999,708	+	IAI47_04745	0.23	+0.2
999,709	-	IAI47_04745	0.23	-1.8
999,709	-	IAI47_04745	0.23	-1.2
999,709	-	IAI47_04745	0.23	+0.2
999,709	-	IAI47_04745	0.23	-0.3
999,753	+	IAI47_04745	0.32	+1.0
999,753	+	IAI47_04745	0.32	-0.5
999,754	-	IAI47_04745	0.32	+0.6
999,754	-	IAI47_04745	0.32	+0.2
999,780	+	IAI47_04745	0.36	-0.0
999,780	+	IAI47_04745	0.36	-0.8
999,795	+	IAI47_04745	0.39	+0.5
999,795	+	IAI47_04745	0.39	-0.8
999,795	+	IAI47_04745	0.39	-1.1
999,795	+	IAI47_04745	0.39	-1.5
999,795	+	IAI47_04745	0.39	+1.5
999,795	+	IAI47_04745	0.39	-1.7
999,796	-	IAI47_04745	0.39	+0.1
999,814	+	IAI47_04745	0.43	-0.4
999,814	+	IAI47_04745	0.43	+0.4
999,815	-	IAI47_04745	0.43	+1.2
999,820	+	IAI47_04745	0.44	+0.1
999,820	+	IAI47_04745	0.44	-2.9
999,820	+	IAI47_04745	0.44	-0.0
999,820	+	IAI47_04745	0.44	+0.2
999,820	+	IAI47_04745	0.44	-1.0
999,820	+	IAI47_04745	0.44	+1.9
999,820	+	IAI47_04745	0.44	-0.2
999,821	-	IAI47_04745	0.44	+0.1
999,822	+	IAI47_04745	0.44	-0.8
999,823	-	IAI47_04745	0.44	-0.9
999,823	-	IAI47_04745	0.44	+1.3
999,829	-	IAI47_04745	0.45	+0.1
999,829	-	IAI47_04745	0.45	+0.6
999,829	-	IAI47_04745	0.45	+1.5
999,843	+	IAI47_04745	0.48	-0.5
999,844	-	IAI47_04745	0.48	-0.3
999,844	-			+1.8
999,844	-	IAI47_04745	0.48	-0.3
999,874	-	IAI47_04745	0.54	+1.4
999,935	-	IAI47_04745	0.65	-1.7
999,935	-	IAI47_04745	0.65	+0.1
1,000,036	+	IAI47_04745	0.83	+4.6
1,000,037	-	IAI47_04745	0.83	+0.7
1,000,037	-	IAI47_04745	0.83	+1.5
1,000,037	-	IAI47_04745	0.83	-0.5
1,000,037	-	IAI47_04745	0.83	+0.8
1,000,037	-	IAI47_04745	0.83	+0.5
1,000,051	-	IAI47_04745	0.86	+1.2
1,000,051	-	IAI47_04745	0.86	+0.0
1,000,051	-	IAI47_04745	0.86	+1.1
1,000,088	+			-2.3
1,000,088	+			+0.5
1,000,088	+			+2.2
1,000,089	-			-0.8
1,000,089	-			-2.8
1,000,089	-			+0.2
1,000,091	-			-1.4
1,000,091	-			-0.4
1,000,243	+	IAI47_04750	0.42	+2.0
1,000,243	+	IAI47_04750	0.42	-1.2
1,000,244	-	IAI47_04750	0.42	-2.6
1,000,248	+	IAI47_04750	0.44	+2.4
1,000,274	-	IAI47_04750	0.54	-0.7
1,000,378	+			+0.2
1,000,378	+			+1.3
1,000,378	+			+0.8
1,000,379	-			+0.6
1,000,379	-			-0.1
1,000,379	-			-0.4
1,000,379	-			+3.0
1,000,379	-			-2.5
1,000,379	-			+0.3
1,000,379	-			-0.5
1,000,379	-			-1.1
1,000,379	-			+0.6
1,000,379	-			+0.9
1,000,389	+			-0.0
1,000,389	+			+0.7
1,000,389	+			+0.7
1,000,389	+			+1.0
1,000,504	+	IAI47_04755	0.48	-0.8
1,000,504	+	IAI47_04755	0.48	-3.0
1,000,504	+	IAI47_04755	0.48	-0.2
1,000,504	+	IAI47_04755	0.48	-0.4
1,000,505	-	IAI47_04755	0.48	+0.1
1,000,505	-	IAI47_04755	0.48	-1.2
1,000,511	+	IAI47_04755	0.50	-1.3
1,000,512	-	IAI47_04755	0.51	-1.8
1,000,563	+	IAI47_04755	0.71	-0.7
1,000,564	-	IAI47_04755	0.71	+0.9
1,000,564	-	IAI47_04755	0.71	-0.0
1,000,564	-	IAI47_04755	0.71	+1.8
1,000,564	-	IAI47_04755	0.71	-2.4
1,000,644	+			+1.2
1,000,644	+			+2.4
1,000,644	+			+1.6
1,000,645	-			+1.3
1,000,645	-			-0.6
1,000,652	+			-1.8
1,000,652	+			-2.0
1,000,652	+			-0.9
1,000,652	+			-1.9
1,000,653	-			+2.9
1,000,653	-			-0.7
1,000,653	-			+1.6
1,000,697	-			+3.4
1,000,697	-			+1.2
1,000,704	+			+0.2
1,000,713	+			-2.0
1,000,715	+			-0.5
1,000,715	+			+0.1
1,000,716	-			+0.6
1,000,716	-			-1.6
1,000,716	-			+0.7
1,000,716	-			+1.7
1,000,729	+			-0.1
1,000,729	+			+0.5
1,000,729	+			-1.3
1,000,729	+			-0.7
1,000,729	+			+0.8
1,000,729	+			+0.4
1,000,729	+			-1.2
1,000,730	-			+2.4
1,000,730	-			-0.0
1,000,730	-			+0.3
1,000,775	+			-1.2
1,000,775	+			-0.7
1,000,775	+			-1.3
1,000,775	+			+0.6
1,000,775	+			-1.2
1,000,776	-			-2.4
1,000,776	-			-1.8
1,000,823	+			+1.0
1,000,851	+			+0.1
1,000,852	-			+1.8
1,000,852	-			+0.2
1,000,899	-			+0.8
1,000,899	-			-1.9
1,000,926	+			-0.4
1,000,926	+			+0.5
1,000,927	-			+0.1
1,000,927	-			+1.2
1,000,942	-			+0.3
1,000,965	-			-0.4
1,000,974	-			-0.3
1,000,974	-			+0.2
1,000,977	+			-2.4
1,001,001	+			-0.7
1,001,015	+			-1.6
1,001,015	+			-0.8
1,001,015	+			+0.9
1,001,016	-			+1.5
1,001,016	-			+1.0
1,001,016	-			+1.1
1,001,016	-			-0.6
1,001,016	-			-1.0
1,001,016	-			-0.7
1,001,016	-			+1.1
1,001,017	+			+1.3
1,001,017	+			-0.7
1,001,017	+			+0.6
1,001,017	+			-0.8
1,001,018	-			-2.6
1,001,018	-			+3.4
1,001,018	-			-0.5
1,001,018	-			-1.8
1,001,026	+			+0.3
1,001,027	-			-1.6
1,001,115	-			+0.6
1,001,115	-			-0.8
1,001,139	+			+1.0
1,001,139	+			-1.3
1,001,140	-			+1.6
1,001,143	+			+0.4
1,001,223	-			+2.0
1,001,223	-			+0.8
1,001,241	+	IAI47_04760	0.11	-0.3
1,001,241	+	IAI47_04760	0.11	-1.6
1,001,241	+	IAI47_04760	0.11	-1.3
1,001,241	+	IAI47_04760	0.11	-2.4
1,001,242	-	IAI47_04760	0.11	+1.2
1,001,242	-	IAI47_04760	0.11	+0.1
1,001,242	-	IAI47_04760	0.11	+1.4
1,001,243	+	IAI47_04760	0.12	+1.0
1,001,261	+	IAI47_04760	0.14	+0.2
1,001,262	-	IAI47_04760	0.14	-0.2
1,001,263	+	IAI47_04760	0.14	-0.6
1,001,263	+	IAI47_04760	0.14	+0.9
1,001,263	+	IAI47_04760	0.14	-0.4
1,001,263	+	IAI47_04760	0.14	+0.2
1,001,263	+	IAI47_04760	0.14	+2.1
1,001,264	-	IAI47_04760	0.15	-1.7
1,001,264	-	IAI47_04760	0.15	-2.8
1,001,264	-	IAI47_04760	0.15	+2.6
1,001,264	-	IAI47_04760	0.15	+0.8
1,001,360	+	IAI47_04760	0.28	+5.0
1,001,360	+	IAI47_04760	0.28	+1.7
1,001,361	-	IAI47_04760	0.28	-0.4
1,001,361	-	IAI47_04760	0.28	+0.7
1,001,435	+	IAI47_04760	0.38	+0.1
1,001,435	+	IAI47_04760	0.38	-0.8
1,001,435	+	IAI47_04760	0.38	-0.5
1,001,435	+	IAI47_04760	0.38	-0.1
1,001,453	+	IAI47_04760	0.41	+0.5
1,001,489	+	IAI47_04760	0.46	+0.8
1,001,489	+	IAI47_04760	0.46	+0.2
1,001,490	-	IAI47_04760	0.46	-0.3
1,001,496	+	IAI47_04760	0.47	-2.1
1,001,496	+	IAI47_04760	0.47	+0.7
1,001,496	+	IAI47_04760	0.47	-1.0
1,001,496	+	IAI47_04760	0.47	-0.1
1,001,496	+	IAI47_04760	0.47	-1.3
1,001,496	+	IAI47_04760	0.47	-2.3
1,001,497	-	IAI47_04760	0.47	+1.8
1,001,497	-	IAI47_04760	0.47	-0.3
1,001,497	-	IAI47_04760	0.47	+1.5
1,001,497	-	IAI47_04760	0.47	-0.9
1,001,522	+	IAI47_04760	0.50	+0.8
1,001,523	-	IAI47_04760	0.51	-0.2
1,001,523	-	IAI47_04760	0.51	-1.9
1,001,561	+	IAI47_04760	0.56	+2.5
1,001,562	-	IAI47_04760	0.56	+1.0
1,001,566	+	IAI47_04760	0.57	+2.0
1,001,566	+	IAI47_04760	0.57	+0.5
1,001,566	+	IAI47_04760	0.57	+1.0
1,001,566	+	IAI47_04760	0.57	-1.4
1,001,566	+	IAI47_04760	0.57	-0.4
1,001,566	+	IAI47_04760	0.57	+0.8
1,001,566	+	IAI47_04760	0.57	-0.2
1,001,566	+	IAI47_04760	0.57	-0.8
1,001,567	-	IAI47_04760	0.57	+1.9
1,001,567	-	IAI47_04760	0.57	+0.3
1,001,567	-	IAI47_04760	0.57	-0.3
1,001,567	-	IAI47_04760	0.57	-1.1
1,001,567	-	IAI47_04760	0.57	-1.1
1,001,591	+	IAI47_04760	0.60	+1.4
1,001,592	-	IAI47_04760	0.60	-2.7

Or see this region's nucleotide sequence