Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28950

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28945 and AO353_28950 are separated by 12 nucleotidesAO353_28950 and AO353_28955 are separated by 22 nucleotides AO353_28945: AO353_28945 - potassium-transporting ATPase subunit B, at 6,291,957 to 6,294,035 _28945 AO353_28950: AO353_28950 - potassium-transporting ATPase subunit C, at 6,294,048 to 6,294,620 _28950 AO353_28955: AO353_28955 - sensor protein KdpD, at 6,294,643 to 6,297,342 _28955 Position (kb) 6294 6295Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6293.270 kb on + strand, within AO353_28945at 6293.502 kb on + strand, within AO353_28945at 6293.502 kb on + strand, within AO353_28945at 6293.503 kb on - strand, within AO353_28945at 6293.745 kb on + strand, within AO353_28945at 6293.782 kb on - strand, within AO353_28945at 6293.867 kb on + strandat 6293.908 kb on - strandat 6293.956 kb on - strandat 6294.041 kb on + strandat 6294.041 kb on + strandat 6294.041 kb on + strandat 6294.042 kb on - strandat 6294.042 kb on - strandat 6294.047 kb on + strandat 6294.047 kb on + strandat 6294.047 kb on + strandat 6294.047 kb on + strandat 6294.047 kb on + strandat 6294.047 kb on + strandat 6294.047 kb on + strandat 6294.048 kb on - strandat 6294.048 kb on - strandat 6294.048 kb on - strandat 6294.048 kb on - strandat 6294.048 kb on - strandat 6294.048 kb on - strandat 6294.048 kb on - strandat 6294.048 kb on - strandat 6294.052 kb on + strandat 6294.052 kb on + strandat 6294.052 kb on + strandat 6294.052 kb on + strandat 6294.052 kb on + strandat 6294.052 kb on + strandat 6294.052 kb on + strandat 6294.052 kb on + strandat 6294.052 kb on + strandat 6294.052 kb on + strandat 6294.052 kb on + strandat 6294.052 kb on + strandat 6294.052 kb on + strandat 6294.053 kb on - strandat 6294.053 kb on - strandat 6294.053 kb on - strandat 6294.053 kb on - strandat 6294.053 kb on - strandat 6294.053 kb on - strandat 6294.053 kb on - strandat 6294.053 kb on - strandat 6294.053 kb on - strandat 6294.114 kb on + strand, within AO353_28950at 6294.114 kb on + strand, within AO353_28950at 6294.192 kb on - strand, within AO353_28950at 6294.240 kb on + strand, within AO353_28950at 6294.241 kb on - strand, within AO353_28950at 6294.241 kb on - strand, within AO353_28950at 6294.241 kb on - strand, within AO353_28950at 6294.279 kb on + strand, within AO353_28950at 6294.279 kb on + strand, within AO353_28950at 6294.279 kb on + strand, within AO353_28950at 6294.279 kb on + strand, within AO353_28950at 6294.280 kb on - strand, within AO353_28950at 6294.414 kb on + strand, within AO353_28950at 6294.414 kb on + strand, within AO353_28950at 6294.415 kb on - strand, within AO353_28950at 6294.444 kb on - strand, within AO353_28950at 6294.465 kb on + strand, within AO353_28950at 6294.466 kb on - strand, within AO353_28950at 6294.674 kb on + strandat 6294.675 kb on - strandat 6294.763 kb on + strandat 6294.763 kb on + strandat 6294.764 kb on - strandat 6294.764 kb on - strandat 6294.878 kb on + strandat 6294.878 kb on + strandat 6294.878 kb on + strandat 6294.878 kb on + strandat 6294.878 kb on + strandat 6294.878 kb on + strandat 6294.879 kb on - strandat 6294.879 kb on - strandat 6294.879 kb on - strandat 6294.912 kb on + strandat 6294.912 kb on + strandat 6294.912 kb on + strandat 6294.912 kb on + strandat 6294.912 kb on + strandat 6294.913 kb on - strand, within AO353_28955at 6294.913 kb on - strand, within AO353_28955at 6294.913 kb on - strand, within AO353_28955at 6295.031 kb on + strand, within AO353_28955at 6295.031 kb on + strand, within AO353_28955at 6295.031 kb on + strand, within AO353_28955at 6295.032 kb on - strand, within AO353_28955at 6295.032 kb on - strand, within AO353_28955at 6295.032 kb on - strand, within AO353_28955at 6295.032 kb on - strand, within AO353_28955at 6295.032 kb on - strand, within AO353_28955at 6295.032 kb on - strand, within AO353_28955at 6295.237 kb on + strand, within AO353_28955at 6295.237 kb on + strand, within AO353_28955at 6295.237 kb on + strand, within AO353_28955at 6295.237 kb on + strand, within AO353_28955at 6295.237 kb on + strand, within AO353_28955at 6295.237 kb on + strand, within AO353_28955at 6295.237 kb on + strand, within AO353_28955at 6295.237 kb on + strand, within AO353_28955at 6295.237 kb on + strand, within AO353_28955at 6295.237 kb on + strand, within AO353_28955at 6295.237 kb on + strand, within AO353_28955at 6295.237 kb on + strand, within AO353_28955at 6295.238 kb on - strand, within AO353_28955at 6295.238 kb on - strand, within AO353_28955at 6295.238 kb on - strand, within AO353_28955at 6295.238 kb on - strand, within AO353_28955at 6295.238 kb on - strand, within AO353_28955at 6295.238 kb on - strand, within AO353_28955at 6295.238 kb on - strand, within AO353_28955at 6295.238 kb on - strand, within AO353_28955at 6295.238 kb on - strand, within AO353_28955at 6295.238 kb on - strandat 6295.238 kb on - strand, within AO353_28955at 6295.238 kb on - strand, within AO353_28955at 6295.238 kb on - strand, within AO353_28955at 6295.238 kb on - strand, within AO353_28955at 6295.238 kb on - strand, within AO353_28955at 6295.238 kb on - strand, within AO353_28955at 6295.240 kb on - strand, within AO353_28955at 6295.240 kb on - strand, within AO353_28955at 6295.240 kb on - strand, within AO353_28955at 6295.501 kb on + strand, within AO353_28955at 6295.502 kb on - strand, within AO353_28955at 6295.502 kb on - strand, within AO353_28955at 6295.502 kb on - strand, within AO353_28955at 6295.502 kb on - strand, within AO353_28955at 6295.502 kb on - strand, within AO353_28955at 6295.502 kb on - strand, within AO353_28955

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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6,293,270 + AO353_28945 0.63 +0.5
6,293,502 + AO353_28945 0.74 +0.6
6,293,502 + AO353_28945 0.74 -1.1
6,293,503 - AO353_28945 0.74 -0.6
6,293,745 + AO353_28945 0.86 +0.6
6,293,782 - AO353_28945 0.88 -0.7
6,293,867 + -2.4
6,293,908 - -0.6
6,293,956 - +0.3
6,294,041 + -0.1
6,294,041 + -0.4
6,294,041 + +0.0
6,294,042 - +0.0
6,294,042 - +0.6
6,294,047 + -0.9
6,294,047 + +0.9
6,294,047 + +0.4
6,294,047 + +0.1
6,294,047 + -1.1
6,294,047 + -0.9
6,294,047 + -0.8
6,294,048 - -0.1
6,294,048 - +0.7
6,294,048 - -0.4
6,294,048 - -0.9
6,294,048 - +2.1
6,294,048 - +0.5
6,294,048 - -0.9
6,294,048 - +0.9
6,294,052 + -0.4
6,294,052 + -0.1
6,294,052 + +1.6
6,294,052 + -1.2
6,294,052 + -0.1
6,294,052 + -0.6
6,294,052 + -0.4
6,294,052 + -1.4
6,294,052 + -0.2
6,294,052 + -0.5
6,294,052 + -0.1
6,294,052 + +0.4
6,294,052 + -0.2
6,294,053 - -0.4
6,294,053 - -0.1
6,294,053 - -1.0
6,294,053 - -1.0
6,294,053 - +0.0
6,294,053 - -0.1
6,294,053 - -0.1
6,294,053 - +1.7
6,294,053 - -0.5
6,294,114 + AO353_28950 0.12 +0.5
6,294,114 + AO353_28950 0.12 +0.6
6,294,192 - AO353_28950 0.25 +0.6
6,294,240 + AO353_28950 0.34 +0.4
6,294,241 - AO353_28950 0.34 -1.7
6,294,241 - AO353_28950 0.34 +1.1
6,294,241 - AO353_28950 0.34 -2.2
6,294,279 + AO353_28950 0.40 +1.8
6,294,279 + AO353_28950 0.40 -0.7
6,294,279 + AO353_28950 0.40 +0.1
6,294,279 + AO353_28950 0.40 -0.9
6,294,280 - AO353_28950 0.40 +0.6
6,294,414 + AO353_28950 0.64 -2.3
6,294,414 + AO353_28950 0.64 +0.7
6,294,415 - AO353_28950 0.64 +0.2
6,294,444 - AO353_28950 0.69 +0.0
6,294,465 + AO353_28950 0.73 -0.4
6,294,466 - AO353_28950 0.73 +0.9
6,294,674 + -2.0
6,294,675 - +0.4
6,294,763 + +0.7
6,294,763 + -0.4
6,294,764 - +0.8
6,294,764 - -0.0
6,294,878 + -0.8
6,294,878 + -0.1
6,294,878 + -3.1
6,294,878 + -0.3
6,294,878 + -0.1
6,294,878 + +0.7
6,294,879 - +0.5
6,294,879 - +0.7
6,294,879 - +0.5
6,294,912 + +1.2
6,294,912 + +0.7
6,294,912 + -0.6
6,294,912 + +0.9
6,294,912 + +0.1
6,294,913 - AO353_28955 0.10 -0.2
6,294,913 - AO353_28955 0.10 +0.2
6,294,913 - AO353_28955 0.10 -1.5
6,295,031 + AO353_28955 0.14 -1.6
6,295,031 + AO353_28955 0.14 +0.7
6,295,031 + AO353_28955 0.14 -0.6
6,295,032 - AO353_28955 0.14 -0.2
6,295,032 - AO353_28955 0.14 -2.3
6,295,032 - AO353_28955 0.14 +1.0
6,295,032 - AO353_28955 0.14 +0.0
6,295,032 - AO353_28955 0.14 +0.7
6,295,032 - AO353_28955 0.14 +1.2
6,295,237 + AO353_28955 0.22 +0.8
6,295,237 + AO353_28955 0.22 +0.5
6,295,237 + AO353_28955 0.22 -0.7
6,295,237 + AO353_28955 0.22 +1.2
6,295,237 + AO353_28955 0.22 +0.3
6,295,237 + AO353_28955 0.22 +1.9
6,295,237 + AO353_28955 0.22 -0.5
6,295,237 + AO353_28955 0.22 +2.2
6,295,237 + AO353_28955 0.22 +0.6
6,295,237 + AO353_28955 0.22 -0.1
6,295,237 + AO353_28955 0.22 +0.1
6,295,237 + AO353_28955 0.22 +0.0
6,295,238 - AO353_28955 0.22 -0.0
6,295,238 - AO353_28955 0.22 +1.8
6,295,238 - AO353_28955 0.22 -0.4
6,295,238 - AO353_28955 0.22 -0.3
6,295,238 - AO353_28955 0.22 +0.1
6,295,238 - AO353_28955 0.22 +0.6
6,295,238 - AO353_28955 0.22 -0.2
6,295,238 - AO353_28955 0.22 +0.2
6,295,238 - AO353_28955 0.22 -0.6
6,295,238 - -1.7
6,295,238 - AO353_28955 0.22 -0.4
6,295,238 - AO353_28955 0.22 +1.0
6,295,238 - AO353_28955 0.22 -2.3
6,295,238 - AO353_28955 0.22 +0.7
6,295,238 - AO353_28955 0.22 -1.7
6,295,238 - AO353_28955 0.22 -1.3
6,295,240 - AO353_28955 0.22 -2.0
6,295,240 - AO353_28955 0.22 -0.3
6,295,240 - AO353_28955 0.22 -0.4
6,295,501 + AO353_28955 0.32 +0.2
6,295,502 - AO353_28955 0.32 -1.1
6,295,502 - AO353_28955 0.32 +0.4
6,295,502 - AO353_28955 0.32 -0.3
6,295,502 - AO353_28955 0.32 -0.4
6,295,502 - AO353_28955 0.32 -0.2
6,295,502 - AO353_28955 0.32 +1.2

Or see this region's nucleotide sequence