Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02905

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02900 and AO353_02905 are separated by 126 nucleotidesAO353_02905 and AO353_02910 overlap by 4 nucleotides AO353_02900: AO353_02900 - glutamate--ammonia ligase, at 615,172 to 616,515 _02900 AO353_02905: AO353_02905 - histidine kinase, at 616,642 to 617,334 _02905 AO353_02910: AO353_02910 - chemotaxis protein CheY, at 617,331 to 618,935 _02910 Position (kb) 616 617 618Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 615.768 kb on + strand, within AO353_02900at 615.769 kb on - strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.833 kb on - strand, within AO353_02900at 615.833 kb on - strand, within AO353_02900at 615.833 kb on - strand, within AO353_02900at 615.833 kb on - strand, within AO353_02900at 615.833 kb on - strand, within AO353_02900at 615.833 kb on - strand, within AO353_02900at 615.833 kb on - strand, within AO353_02900at 615.931 kb on - strand, within AO353_02900at 615.965 kb on + strand, within AO353_02900at 615.966 kb on - strand, within AO353_02900at 615.966 kb on - strand, within AO353_02900at 615.966 kb on - strand, within AO353_02900at 616.295 kb on - strand, within AO353_02900at 616.317 kb on - strand, within AO353_02900at 616.317 kb on - strand, within AO353_02900at 616.521 kb on + strandat 616.521 kb on + strandat 616.521 kb on + strandat 616.521 kb on + strandat 616.521 kb on + strandat 616.521 kb on + strandat 616.521 kb on + strandat 616.522 kb on - strandat 616.559 kb on - strandat 616.559 kb on - strandat 616.559 kb on - strandat 616.565 kb on + strandat 616.565 kb on + strandat 616.565 kb on + strandat 616.566 kb on - strandat 616.566 kb on - strandat 616.566 kb on - strandat 616.585 kb on + strandat 616.585 kb on + strandat 616.586 kb on - strandat 616.652 kb on + strandat 616.652 kb on + strandat 616.653 kb on - strandat 616.740 kb on + strand, within AO353_02905at 616.740 kb on + strand, within AO353_02905at 616.741 kb on - strand, within AO353_02905at 616.741 kb on - strandat 616.755 kb on - strand, within AO353_02905at 616.755 kb on - strand, within AO353_02905at 616.755 kb on - strand, within AO353_02905at 616.798 kb on + strand, within AO353_02905at 616.798 kb on + strand, within AO353_02905at 616.798 kb on + strand, within AO353_02905at 616.798 kb on + strand, within AO353_02905at 616.798 kb on + strand, within AO353_02905at 616.798 kb on + strand, within AO353_02905at 616.798 kb on + strand, within AO353_02905at 616.799 kb on - strand, within AO353_02905at 616.799 kb on - strand, within AO353_02905at 616.799 kb on - strand, within AO353_02905at 616.799 kb on - strand, within AO353_02905at 616.802 kb on + strand, within AO353_02905at 616.802 kb on + strand, within AO353_02905at 616.802 kb on + strand, within AO353_02905at 616.802 kb on + strand, within AO353_02905at 616.802 kb on + strand, within AO353_02905at 616.803 kb on - strand, within AO353_02905at 616.803 kb on - strand, within AO353_02905at 616.803 kb on - strand, within AO353_02905at 616.803 kb on - strand, within AO353_02905at 617.006 kb on + strand, within AO353_02905at 617.006 kb on + strand, within AO353_02905at 617.006 kb on + strand, within AO353_02905at 617.006 kb on + strand, within AO353_02905at 617.006 kb on + strand, within AO353_02905at 617.007 kb on - strand, within AO353_02905at 617.007 kb on - strand, within AO353_02905at 617.007 kb on - strand, within AO353_02905at 617.007 kb on - strand, within AO353_02905at 617.007 kb on - strand, within AO353_02905at 617.007 kb on - strand, within AO353_02905at 617.007 kb on - strand, within AO353_02905at 617.087 kb on + strand, within AO353_02905at 617.087 kb on + strand, within AO353_02905at 617.088 kb on - strand, within AO353_02905at 617.088 kb on - strand, within AO353_02905at 617.088 kb on - strand, within AO353_02905at 617.126 kb on + strand, within AO353_02905at 617.126 kb on + strand, within AO353_02905at 617.126 kb on + strand, within AO353_02905at 617.127 kb on - strand, within AO353_02905at 617.127 kb on - strand, within AO353_02905at 617.127 kb on - strand, within AO353_02905at 617.127 kb on - strand, within AO353_02905at 617.127 kb on - strand, within AO353_02905at 617.174 kb on + strand, within AO353_02905at 617.174 kb on + strand, within AO353_02905at 617.175 kb on - strand, within AO353_02905at 617.281 kb on + strandat 617.281 kb on + strandat 617.420 kb on + strandat 617.420 kb on + strandat 617.420 kb on + strandat 617.420 kb on + strandat 617.420 kb on + strandat 617.421 kb on - strandat 617.421 kb on - strandat 617.486 kb on + strandat 617.498 kb on + strand, within AO353_02910at 617.498 kb on + strand, within AO353_02910at 617.498 kb on + strand, within AO353_02910at 617.498 kb on + strand, within AO353_02910at 617.572 kb on + strand, within AO353_02910at 617.572 kb on + strand, within AO353_02910at 617.573 kb on - strand, within AO353_02910at 617.573 kb on - strand, within AO353_02910at 617.573 kb on - strand, within AO353_02910at 617.683 kb on + strand, within AO353_02910at 617.684 kb on - strand, within AO353_02910at 617.987 kb on + strand, within AO353_02910at 617.987 kb on + strand, within AO353_02910at 617.988 kb on - strand, within AO353_02910at 617.988 kb on - strand, within AO353_02910at 618.232 kb on + strand, within AO353_02910at 618.232 kb on + strand, within AO353_02910at 618.232 kb on + strand, within AO353_02910at 618.232 kb on + strand, within AO353_02910at 618.232 kb on + strand, within AO353_02910at 618.232 kb on + strand, within AO353_02910at 618.232 kb on + strand, within AO353_02910at 618.233 kb on - strand, within AO353_02910at 618.233 kb on - strand, within AO353_02910at 618.233 kb on - strand, within AO353_02910at 618.233 kb on - strand, within AO353_02910at 618.233 kb on - strand, within AO353_02910at 618.233 kb on - strand, within AO353_02910at 618.233 kb on - strand, within AO353_02910at 618.233 kb on - strand, within AO353_02910at 618.274 kb on + strand, within AO353_02910at 618.334 kb on + strand, within AO353_02910at 618.334 kb on + strand, within AO353_02910at 618.334 kb on + strand, within AO353_02910at 618.334 kb on + strand, within AO353_02910at 618.334 kb on + strand, within AO353_02910

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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615,768 + AO353_02900 0.44 +0.2
615,769 - AO353_02900 0.44 -0.4
615,832 + AO353_02900 0.49 +0.1
615,832 + AO353_02900 0.49 -0.4
615,832 + AO353_02900 0.49 +0.5
615,832 + AO353_02900 0.49 -0.3
615,832 + AO353_02900 0.49 -0.0
615,832 + AO353_02900 0.49 -1.2
615,832 + AO353_02900 0.49 +0.2
615,832 + AO353_02900 0.49 -0.2
615,832 + AO353_02900 0.49 -0.9
615,833 - AO353_02900 0.49 +2.4
615,833 - AO353_02900 0.49 +0.6
615,833 - AO353_02900 0.49 +1.9
615,833 - AO353_02900 0.49 +0.5
615,833 - AO353_02900 0.49 -0.8
615,833 - AO353_02900 0.49 +1.2
615,833 - AO353_02900 0.49 -0.9
615,931 - AO353_02900 0.56 +0.2
615,965 + AO353_02900 0.59 +0.3
615,966 - AO353_02900 0.59 -1.0
615,966 - AO353_02900 0.59 -0.3
615,966 - AO353_02900 0.59 -0.9
616,295 - AO353_02900 0.84 +0.5
616,317 - AO353_02900 0.85 -2.0
616,317 - AO353_02900 0.85 +0.1
616,521 + -1.0
616,521 + +0.5
616,521 + -1.9
616,521 + -0.6
616,521 + +0.7
616,521 + +1.3
616,521 + +0.6
616,522 - +0.6
616,559 - +0.1
616,559 - -0.3
616,559 - -0.1
616,565 + +1.2
616,565 + +1.3
616,565 + +0.5
616,566 - -2.5
616,566 - +1.0
616,566 - -0.4
616,585 + +0.9
616,585 + +0.1
616,586 - -1.6
616,652 + +0.9
616,652 + +0.0
616,653 - -2.0
616,740 + AO353_02905 0.14 -0.4
616,740 + AO353_02905 0.14 -3.3
616,741 - AO353_02905 0.14 -0.5
616,741 - +0.9
616,755 - AO353_02905 0.16 +2.1
616,755 - AO353_02905 0.16 -0.6
616,755 - AO353_02905 0.16 +1.9
616,798 + AO353_02905 0.23 +1.1
616,798 + AO353_02905 0.23 +0.9
616,798 + AO353_02905 0.23 -0.4
616,798 + AO353_02905 0.23 -1.0
616,798 + AO353_02905 0.23 -2.3
616,798 + AO353_02905 0.23 +0.4
616,798 + AO353_02905 0.23 -0.2
616,799 - AO353_02905 0.23 -1.3
616,799 - AO353_02905 0.23 -0.2
616,799 - AO353_02905 0.23 +0.8
616,799 - AO353_02905 0.23 -1.0
616,802 + AO353_02905 0.23 +1.1
616,802 + AO353_02905 0.23 -0.1
616,802 + AO353_02905 0.23 -0.4
616,802 + AO353_02905 0.23 -0.8
616,802 + AO353_02905 0.23 +0.2
616,803 - AO353_02905 0.23 +0.3
616,803 - AO353_02905 0.23 +1.2
616,803 - AO353_02905 0.23 +0.3
616,803 - AO353_02905 0.23 -0.2
617,006 + AO353_02905 0.53 +0.5
617,006 + AO353_02905 0.53 -0.6
617,006 + AO353_02905 0.53 +0.1
617,006 + AO353_02905 0.53 -0.1
617,006 + AO353_02905 0.53 -0.4
617,007 - AO353_02905 0.53 -0.2
617,007 - AO353_02905 0.53 +0.0
617,007 - AO353_02905 0.53 -0.1
617,007 - AO353_02905 0.53 -0.9
617,007 - AO353_02905 0.53 +0.0
617,007 - AO353_02905 0.53 +1.3
617,007 - AO353_02905 0.53 -0.1
617,087 + AO353_02905 0.64 +0.1
617,087 + AO353_02905 0.64 +0.6
617,088 - AO353_02905 0.64 -0.4
617,088 - AO353_02905 0.64 +0.7
617,088 - AO353_02905 0.64 -0.1
617,126 + AO353_02905 0.70 -0.0
617,126 + AO353_02905 0.70 -1.3
617,126 + AO353_02905 0.70 -0.2
617,127 - AO353_02905 0.70 -0.7
617,127 - AO353_02905 0.70 -0.2
617,127 - AO353_02905 0.70 +0.3
617,127 - AO353_02905 0.70 +0.8
617,127 - AO353_02905 0.70 -0.2
617,174 + AO353_02905 0.77 +0.2
617,174 + AO353_02905 0.77 +1.1
617,175 - AO353_02905 0.77 -0.5
617,281 + +0.3
617,281 + -0.3
617,420 + +0.5
617,420 + -0.1
617,420 + -2.2
617,420 + +1.2
617,420 + +1.0
617,421 - -1.1
617,421 - -1.5
617,486 + +0.7
617,498 + AO353_02910 0.10 -0.2
617,498 + AO353_02910 0.10 +0.3
617,498 + AO353_02910 0.10 -0.4
617,498 + AO353_02910 0.10 +1.1
617,572 + AO353_02910 0.15 -1.3
617,572 + AO353_02910 0.15 +0.2
617,573 - AO353_02910 0.15 +0.1
617,573 - AO353_02910 0.15 -2.4
617,573 - AO353_02910 0.15 -0.8
617,683 + AO353_02910 0.22 +0.0
617,684 - AO353_02910 0.22 +0.3
617,987 + AO353_02910 0.41 +0.5
617,987 + AO353_02910 0.41 +1.0
617,988 - AO353_02910 0.41 +0.5
617,988 - AO353_02910 0.41 -0.1
618,232 + AO353_02910 0.56 -0.9
618,232 + AO353_02910 0.56 +0.9
618,232 + AO353_02910 0.56 -0.5
618,232 + AO353_02910 0.56 +0.4
618,232 + AO353_02910 0.56 +0.1
618,232 + AO353_02910 0.56 -0.9
618,232 + AO353_02910 0.56 +1.5
618,233 - AO353_02910 0.56 +0.2
618,233 - AO353_02910 0.56 -1.8
618,233 - AO353_02910 0.56 +0.4
618,233 - AO353_02910 0.56 -0.5
618,233 - AO353_02910 0.56 -0.1
618,233 - AO353_02910 0.56 -0.7
618,233 - AO353_02910 0.56 -0.9
618,233 - AO353_02910 0.56 -1.4
618,274 + AO353_02910 0.59 +0.1
618,334 + AO353_02910 0.62 +0.9
618,334 + AO353_02910 0.62 +0.1
618,334 + AO353_02910 0.62 +0.0
618,334 + AO353_02910 0.62 +0.3
618,334 + AO353_02910 0.62 -2.1

Or see this region's nucleotide sequence