Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00140

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00135 and AO353_00140 are separated by 10 nucleotidesAO353_00140 and AO353_00145 overlap by 4 nucleotides AO353_00135: AO353_00135 - phage tail protein, at 27,871 to 29,544 _00135 AO353_00140: AO353_00140 - phage tail protein, at 29,555 to 30,079 _00140 AO353_00145: AO353_00145 - hypothetical protein, at 30,076 to 31,251 _00145 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1 2at 28.664 kb on + strand, within AO353_00135at 28.775 kb on + strand, within AO353_00135at 28.775 kb on + strand, within AO353_00135at 28.775 kb on + strand, within AO353_00135at 28.775 kb on + strand, within AO353_00135at 28.776 kb on - strand, within AO353_00135at 28.802 kb on + strand, within AO353_00135at 28.802 kb on + strand, within AO353_00135at 28.802 kb on + strand, within AO353_00135at 28.802 kb on + strand, within AO353_00135at 28.802 kb on + strand, within AO353_00135at 28.803 kb on - strand, within AO353_00135at 28.902 kb on + strand, within AO353_00135at 28.902 kb on + strand, within AO353_00135at 28.903 kb on - strand, within AO353_00135at 28.953 kb on - strand, within AO353_00135at 28.971 kb on + strand, within AO353_00135at 28.972 kb on - strand, within AO353_00135at 28.973 kb on + strand, within AO353_00135at 28.973 kb on + strand, within AO353_00135at 28.973 kb on + strand, within AO353_00135at 28.973 kb on + strand, within AO353_00135at 28.973 kb on + strand, within AO353_00135at 28.973 kb on + strand, within AO353_00135at 28.973 kb on + strand, within AO353_00135at 28.973 kb on + strand, within AO353_00135at 28.973 kb on + strandat 28.973 kb on + strand, within AO353_00135at 28.973 kb on + strand, within AO353_00135at 28.973 kb on + strand, within AO353_00135at 28.973 kb on + strand, within AO353_00135at 28.973 kb on + strand, within AO353_00135at 28.974 kb on - strand, within AO353_00135at 28.974 kb on - strand, within AO353_00135at 28.974 kb on - strand, within AO353_00135at 28.974 kb on - strand, within AO353_00135at 28.974 kb on - strand, within AO353_00135at 28.974 kb on - strand, within AO353_00135at 28.974 kb on - strand, within AO353_00135at 28.974 kb on - strand, within AO353_00135at 28.974 kb on - strand, within AO353_00135at 29.035 kb on + strand, within AO353_00135at 29.035 kb on + strand, within AO353_00135at 29.035 kb on + strand, within AO353_00135at 29.035 kb on + strand, within AO353_00135at 29.036 kb on - strand, within AO353_00135at 29.036 kb on - strand, within AO353_00135at 29.036 kb on - strand, within AO353_00135at 29.321 kb on + strand, within AO353_00135at 29.321 kb on + strand, within AO353_00135at 29.321 kb on + strand, within AO353_00135at 29.321 kb on + strand, within AO353_00135at 29.321 kb on + strand, within AO353_00135at 29.322 kb on - strand, within AO353_00135at 29.345 kb on + strand, within AO353_00135at 29.372 kb on + strand, within AO353_00135at 29.372 kb on + strand, within AO353_00135at 29.372 kb on + strand, within AO353_00135at 29.373 kb on - strand, within AO353_00135at 29.373 kb on - strand, within AO353_00135at 29.467 kb on - strandat 29.532 kb on + strandat 29.533 kb on - strandat 29.557 kb on - strandat 29.643 kb on + strand, within AO353_00140at 29.778 kb on + strand, within AO353_00140at 29.778 kb on + strand, within AO353_00140at 29.778 kb on + strand, within AO353_00140at 29.779 kb on - strand, within AO353_00140at 29.846 kb on - strand, within AO353_00140at 29.853 kb on + strand, within AO353_00140at 29.854 kb on - strand, within AO353_00140at 29.854 kb on - strand, within AO353_00140at 29.854 kb on - strand, within AO353_00140at 29.971 kb on - strand, within AO353_00140at 29.971 kb on - strand, within AO353_00140at 29.971 kb on - strand, within AO353_00140at 30.227 kb on + strand, within AO353_00145at 30.227 kb on + strand, within AO353_00145at 30.227 kb on + strand, within AO353_00145at 30.227 kb on + strand, within AO353_00145at 30.228 kb on - strand, within AO353_00145at 30.245 kb on + strand, within AO353_00145at 30.246 kb on - strand, within AO353_00145at 30.328 kb on + strand, within AO353_00145at 30.328 kb on + strand, within AO353_00145at 30.328 kb on + strand, within AO353_00145at 30.329 kb on - strand, within AO353_00145at 30.329 kb on - strand, within AO353_00145at 30.329 kb on - strand, within AO353_00145at 30.329 kb on - strand, within AO353_00145at 30.329 kb on - strand, within AO353_00145at 30.455 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.492 kb on - strand, within AO353_00145at 30.492 kb on - strand, within AO353_00145at 30.492 kb on - strand, within AO353_00145at 30.492 kb on - strand, within AO353_00145at 30.536 kb on + strand, within AO353_00145at 30.537 kb on - strand, within AO353_00145at 30.537 kb on - strand, within AO353_00145at 30.744 kb on - strand, within AO353_00145at 30.746 kb on + strand, within AO353_00145at 30.747 kb on - strand, within AO353_00145at 30.764 kb on + strand, within AO353_00145at 30.764 kb on + strand, within AO353_00145

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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28,664 + AO353_00135 0.47 -1.0
28,775 + AO353_00135 0.54 +0.7
28,775 + AO353_00135 0.54 -0.7
28,775 + AO353_00135 0.54 -0.3
28,775 + AO353_00135 0.54 +0.1
28,776 - AO353_00135 0.54 +0.1
28,802 + AO353_00135 0.56 +0.2
28,802 + AO353_00135 0.56 +2.3
28,802 + AO353_00135 0.56 -0.3
28,802 + AO353_00135 0.56 -0.2
28,802 + AO353_00135 0.56 +0.7
28,803 - AO353_00135 0.56 +0.3
28,902 + AO353_00135 0.62 +0.6
28,902 + AO353_00135 0.62 -0.2
28,903 - AO353_00135 0.62 -0.7
28,953 - AO353_00135 0.65 +0.3
28,971 + AO353_00135 0.66 +0.2
28,972 - AO353_00135 0.66 +0.3
28,973 + AO353_00135 0.66 +0.3
28,973 + AO353_00135 0.66 +0.1
28,973 + AO353_00135 0.66 -2.2
28,973 + AO353_00135 0.66 +0.2
28,973 + AO353_00135 0.66 +0.3
28,973 + AO353_00135 0.66 +0.4
28,973 + AO353_00135 0.66 +0.3
28,973 + AO353_00135 0.66 +0.3
28,973 + -1.1
28,973 + AO353_00135 0.66 -0.8
28,973 + AO353_00135 0.66 -2.1
28,973 + AO353_00135 0.66 +0.6
28,973 + AO353_00135 0.66 -2.0
28,973 + AO353_00135 0.66 -0.4
28,974 - AO353_00135 0.66 +0.3
28,974 - AO353_00135 0.66 +1.7
28,974 - AO353_00135 0.66 -1.1
28,974 - AO353_00135 0.66 -2.1
28,974 - AO353_00135 0.66 -0.3
28,974 - AO353_00135 0.66 +0.2
28,974 - AO353_00135 0.66 -0.0
28,974 - AO353_00135 0.66 -0.3
28,974 - AO353_00135 0.66 -0.0
29,035 + AO353_00135 0.70 +0.2
29,035 + AO353_00135 0.70 -1.1
29,035 + AO353_00135 0.70 -0.5
29,035 + AO353_00135 0.70 +0.3
29,036 - AO353_00135 0.70 +2.2
29,036 - AO353_00135 0.70 +0.3
29,036 - AO353_00135 0.70 +0.7
29,321 + AO353_00135 0.87 -0.1
29,321 + AO353_00135 0.87 -0.9
29,321 + AO353_00135 0.87 +0.7
29,321 + AO353_00135 0.87 +0.3
29,321 + AO353_00135 0.87 +0.7
29,322 - AO353_00135 0.87 +1.1
29,345 + AO353_00135 0.88 -2.2
29,372 + AO353_00135 0.90 -0.7
29,372 + AO353_00135 0.90 -0.7
29,372 + AO353_00135 0.90 +0.1
29,373 - AO353_00135 0.90 +2.0
29,373 - AO353_00135 0.90 -1.0
29,467 - +0.7
29,532 + +0.7
29,533 - +0.1
29,557 - -0.1
29,643 + AO353_00140 0.17 -1.7
29,778 + AO353_00140 0.42 -0.3
29,778 + AO353_00140 0.42 +0.1
29,778 + AO353_00140 0.42 -1.4
29,779 - AO353_00140 0.43 +0.9
29,846 - AO353_00140 0.55 -0.5
29,853 + AO353_00140 0.57 -0.5
29,854 - AO353_00140 0.57 -0.6
29,854 - AO353_00140 0.57 -2.6
29,854 - AO353_00140 0.57 -0.0
29,971 - AO353_00140 0.79 -1.2
29,971 - AO353_00140 0.79 -1.9
29,971 - AO353_00140 0.79 +0.1
30,227 + AO353_00145 0.13 +0.1
30,227 + AO353_00145 0.13 +0.1
30,227 + AO353_00145 0.13 -1.9
30,227 + AO353_00145 0.13 +0.9
30,228 - AO353_00145 0.13 +1.3
30,245 + AO353_00145 0.14 -2.2
30,246 - AO353_00145 0.14 -1.4
30,328 + AO353_00145 0.21 +0.0
30,328 + AO353_00145 0.21 -0.7
30,328 + AO353_00145 0.21 +0.6
30,329 - AO353_00145 0.22 +1.3
30,329 - AO353_00145 0.22 -0.4
30,329 - AO353_00145 0.22 -2.2
30,329 - AO353_00145 0.22 +0.8
30,329 - AO353_00145 0.22 -0.1
30,455 + AO353_00145 0.32 +0.6
30,491 + AO353_00145 0.35 +0.2
30,491 + AO353_00145 0.35 +0.8
30,491 + AO353_00145 0.35 -0.2
30,491 + AO353_00145 0.35 +0.2
30,491 + AO353_00145 0.35 +0.5
30,491 + AO353_00145 0.35 +0.7
30,491 + AO353_00145 0.35 -1.2
30,491 + AO353_00145 0.35 -0.3
30,491 + AO353_00145 0.35 -0.7
30,491 + AO353_00145 0.35 +0.4
30,491 + AO353_00145 0.35 +1.3
30,492 - AO353_00145 0.35 +1.3
30,492 - AO353_00145 0.35 +0.2
30,492 - AO353_00145 0.35 +0.0
30,492 - AO353_00145 0.35 +0.9
30,536 + AO353_00145 0.39 -0.9
30,537 - AO353_00145 0.39 +0.1
30,537 - AO353_00145 0.39 -1.4
30,744 - AO353_00145 0.57 +0.2
30,746 + AO353_00145 0.57 -0.9
30,747 - AO353_00145 0.57 -2.6
30,764 + AO353_00145 0.59 -0.6
30,764 + AO353_00145 0.59 +0.9

Or see this region's nucleotide sequence