Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_865

Experiment: molybdate 0.25 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_863 and Pf6N2E2_864 overlap by 4 nucleotidesPf6N2E2_864 and Pf6N2E2_865 are separated by 3 nucleotidesPf6N2E2_865 and Pf6N2E2_866 are separated by 22 nucleotidesPf6N2E2_866 and Pf6N2E2_867 are separated by 275 nucleotides Pf6N2E2_863 - Transcriptional regulator, IclR family, at 1,011,922 to 1,012,728 _863 Pf6N2E2_864 - 2-keto-4-pentenoate hydratase (EC 4.2.1.80), at 1,012,725 to 1,013,525 _864 Pf6N2E2_865 - Fumarylacetoacetate hydrolase family protein, at 1,013,529 to 1,014,422 _865 Pf6N2E2_866 - hypothetical protein, at 1,014,445 to 1,015,140 _866 Pf6N2E2_867 - PhaK-like protein, at 1,015,416 to 1,016,696 _867 Position (kb) 1013 1014 1015Strain fitness (log2 ratio) -1 0 1 2at 1012.636 kb on + strand, within Pf6N2E2_863at 1012.636 kb on + strand, within Pf6N2E2_863at 1012.724 kb on + strandat 1012.724 kb on + strandat 1012.725 kb on - strandat 1012.892 kb on - strand, within Pf6N2E2_864at 1012.892 kb on - strand, within Pf6N2E2_864at 1012.892 kb on - strand, within Pf6N2E2_864at 1012.965 kb on + strand, within Pf6N2E2_864at 1012.965 kb on + strand, within Pf6N2E2_864at 1012.966 kb on - strand, within Pf6N2E2_864at 1012.982 kb on - strand, within Pf6N2E2_864at 1012.982 kb on - strand, within Pf6N2E2_864at 1012.982 kb on - strand, within Pf6N2E2_864at 1013.085 kb on + strand, within Pf6N2E2_864at 1013.086 kb on - strand, within Pf6N2E2_864at 1013.155 kb on - strand, within Pf6N2E2_864at 1013.156 kb on + strand, within Pf6N2E2_864at 1013.156 kb on + strand, within Pf6N2E2_864at 1013.157 kb on - strand, within Pf6N2E2_864at 1013.157 kb on - strand, within Pf6N2E2_864at 1013.157 kb on - strand, within Pf6N2E2_864at 1013.157 kb on - strand, within Pf6N2E2_864at 1013.204 kb on - strand, within Pf6N2E2_864at 1013.222 kb on - strand, within Pf6N2E2_864at 1013.379 kb on - strand, within Pf6N2E2_864at 1013.427 kb on + strand, within Pf6N2E2_864at 1013.427 kb on + strand, within Pf6N2E2_864at 1013.427 kb on + strand, within Pf6N2E2_864at 1013.428 kb on - strand, within Pf6N2E2_864at 1013.537 kb on - strandat 1013.537 kb on - strandat 1013.767 kb on - strand, within Pf6N2E2_865at 1014.195 kb on - strand, within Pf6N2E2_865at 1014.204 kb on + strand, within Pf6N2E2_865at 1014.366 kb on + strandat 1014.366 kb on + strandat 1014.367 kb on - strandat 1014.367 kb on - strandat 1014.444 kb on + strandat 1014.468 kb on - strandat 1014.468 kb on - strandat 1014.514 kb on + strandat 1014.514 kb on + strandat 1014.515 kb on - strand, within Pf6N2E2_866at 1014.515 kb on - strand, within Pf6N2E2_866at 1014.515 kb on - strand, within Pf6N2E2_866at 1014.515 kb on - strand, within Pf6N2E2_866at 1014.611 kb on - strand, within Pf6N2E2_866at 1014.611 kb on - strand, within Pf6N2E2_866at 1014.622 kb on + strand, within Pf6N2E2_866at 1014.622 kb on + strand, within Pf6N2E2_866at 1014.622 kb on + strand, within Pf6N2E2_866at 1014.661 kb on + strand, within Pf6N2E2_866at 1014.661 kb on + strand, within Pf6N2E2_866at 1014.661 kb on + strand, within Pf6N2E2_866at 1014.751 kb on + strand, within Pf6N2E2_866at 1014.751 kb on + strand, within Pf6N2E2_866at 1014.778 kb on + strand, within Pf6N2E2_866at 1014.819 kb on + strand, within Pf6N2E2_866at 1014.819 kb on + strand, within Pf6N2E2_866at 1014.819 kb on + strand, within Pf6N2E2_866at 1014.820 kb on - strand, within Pf6N2E2_866at 1014.820 kb on - strand, within Pf6N2E2_866at 1014.879 kb on + strand, within Pf6N2E2_866at 1014.882 kb on + strand, within Pf6N2E2_866at 1014.882 kb on + strand, within Pf6N2E2_866at 1014.883 kb on - strand, within Pf6N2E2_866at 1015.009 kb on + strand, within Pf6N2E2_866at 1015.010 kb on - strand, within Pf6N2E2_866at 1015.093 kb on + strandat 1015.116 kb on + strandat 1015.210 kb on + strandat 1015.210 kb on + strandat 1015.210 kb on + strandat 1015.269 kb on - strandat 1015.277 kb on - strandat 1015.394 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
remove
1,012,636 + Pf6N2E2_863 0.88 -1.0
1,012,636 + Pf6N2E2_863 0.88 +1.7
1,012,724 + +1.0
1,012,724 + -1.5
1,012,725 - -0.5
1,012,892 - Pf6N2E2_864 0.21 +2.3
1,012,892 - Pf6N2E2_864 0.21 -1.6
1,012,892 - Pf6N2E2_864 0.21 -0.4
1,012,965 + Pf6N2E2_864 0.30 +1.7
1,012,965 + Pf6N2E2_864 0.30 +0.3
1,012,966 - Pf6N2E2_864 0.30 +1.9
1,012,982 - Pf6N2E2_864 0.32 -1.0
1,012,982 - Pf6N2E2_864 0.32 +0.5
1,012,982 - Pf6N2E2_864 0.32 +0.9
1,013,085 + Pf6N2E2_864 0.45 +0.3
1,013,086 - Pf6N2E2_864 0.45 +0.1
1,013,155 - Pf6N2E2_864 0.54 +1.3
1,013,156 + Pf6N2E2_864 0.54 -0.5
1,013,156 + Pf6N2E2_864 0.54 -1.5
1,013,157 - Pf6N2E2_864 0.54 -0.1
1,013,157 - Pf6N2E2_864 0.54 -1.7
1,013,157 - Pf6N2E2_864 0.54 +1.1
1,013,157 - Pf6N2E2_864 0.54 -0.5
1,013,204 - Pf6N2E2_864 0.60 +0.1
1,013,222 - Pf6N2E2_864 0.62 +1.5
1,013,379 - Pf6N2E2_864 0.82 -1.3
1,013,427 + Pf6N2E2_864 0.88 -0.1
1,013,427 + Pf6N2E2_864 0.88 +0.8
1,013,427 + Pf6N2E2_864 0.88 -0.7
1,013,428 - Pf6N2E2_864 0.88 +0.6
1,013,537 - +0.7
1,013,537 - +0.0
1,013,767 - Pf6N2E2_865 0.27 -1.3
1,014,195 - Pf6N2E2_865 0.74 +0.8
1,014,204 + Pf6N2E2_865 0.76 -1.5
1,014,366 + +0.8
1,014,366 + +0.7
1,014,367 - -0.5
1,014,367 - +0.0
1,014,444 + +0.4
1,014,468 - -0.5
1,014,468 - -1.3
1,014,514 + -0.8
1,014,514 + +0.3
1,014,515 - Pf6N2E2_866 0.10 +0.0
1,014,515 - Pf6N2E2_866 0.10 -0.3
1,014,515 - Pf6N2E2_866 0.10 -0.6
1,014,515 - Pf6N2E2_866 0.10 +0.1
1,014,611 - Pf6N2E2_866 0.24 -1.0
1,014,611 - Pf6N2E2_866 0.24 -0.3
1,014,622 + Pf6N2E2_866 0.25 +1.0
1,014,622 + Pf6N2E2_866 0.25 +1.0
1,014,622 + Pf6N2E2_866 0.25 +0.5
1,014,661 + Pf6N2E2_866 0.31 +1.5
1,014,661 + Pf6N2E2_866 0.31 -0.6
1,014,661 + Pf6N2E2_866 0.31 -0.3
1,014,751 + Pf6N2E2_866 0.44 +1.6
1,014,751 + Pf6N2E2_866 0.44 +0.4
1,014,778 + Pf6N2E2_866 0.48 -0.8
1,014,819 + Pf6N2E2_866 0.54 -1.1
1,014,819 + Pf6N2E2_866 0.54 -1.3
1,014,819 + Pf6N2E2_866 0.54 -0.9
1,014,820 - Pf6N2E2_866 0.54 +0.3
1,014,820 - Pf6N2E2_866 0.54 +1.0
1,014,879 + Pf6N2E2_866 0.62 -1.5
1,014,882 + Pf6N2E2_866 0.63 +0.3
1,014,882 + Pf6N2E2_866 0.63 +1.9
1,014,883 - Pf6N2E2_866 0.63 -0.7
1,015,009 + Pf6N2E2_866 0.81 -0.3
1,015,010 - Pf6N2E2_866 0.81 -0.8
1,015,093 + +0.3
1,015,116 + +1.3
1,015,210 + -1.1
1,015,210 + +0.7
1,015,210 + +0.2
1,015,269 - -0.1
1,015,277 - -0.3
1,015,394 + +0.1

Or see this region's nucleotide sequence