Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5974

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5972 and Pf6N2E2_5973 are separated by 189 nucleotidesPf6N2E2_5973 and Pf6N2E2_5974 are separated by 5 nucleotidesPf6N2E2_5974 and Pf6N2E2_5975 are separated by 187 nucleotides Pf6N2E2_5972 - hypothetical protein, at 6,790,811 to 6,791,155 _5972 Pf6N2E2_5973 - GCN5-related N-acetyltransferase (EC 2.3.1.57), at 6,791,345 to 6,791,827 _5973 Pf6N2E2_5974 - Uncharacterized glutathione S-transferase-like protein, at 6,791,833 to 6,792,465 _5974 Pf6N2E2_5975 - 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58), at 6,792,653 to 6,793,633 _5975 Position (kb) 6791 6792 6793Strain fitness (log2 ratio) -2 -1 0 1 2at 6790.869 kb on - strand, within Pf6N2E2_5972at 6790.869 kb on - strand, within Pf6N2E2_5972at 6790.909 kb on + strand, within Pf6N2E2_5972at 6790.910 kb on - strand, within Pf6N2E2_5972at 6790.910 kb on - strand, within Pf6N2E2_5972at 6791.271 kb on + strandat 6791.271 kb on + strandat 6791.283 kb on + strandat 6791.283 kb on + strandat 6791.283 kb on + strandat 6791.284 kb on - strandat 6791.284 kb on - strandat 6791.284 kb on - strandat 6791.284 kb on - strandat 6791.309 kb on + strandat 6791.310 kb on - strandat 6791.310 kb on - strandat 6791.310 kb on - strandat 6791.312 kb on + strandat 6791.312 kb on + strandat 6791.312 kb on + strandat 6791.313 kb on - strandat 6791.313 kb on - strandat 6791.331 kb on + strandat 6791.332 kb on - strandat 6791.332 kb on - strandat 6791.470 kb on + strand, within Pf6N2E2_5973at 6791.471 kb on - strand, within Pf6N2E2_5973at 6791.558 kb on + strand, within Pf6N2E2_5973at 6791.559 kb on - strand, within Pf6N2E2_5973at 6791.559 kb on - strand, within Pf6N2E2_5973at 6791.559 kb on - strand, within Pf6N2E2_5973at 6791.588 kb on + strand, within Pf6N2E2_5973at 6791.588 kb on + strand, within Pf6N2E2_5973at 6791.589 kb on - strand, within Pf6N2E2_5973at 6791.603 kb on + strand, within Pf6N2E2_5973at 6791.603 kb on + strand, within Pf6N2E2_5973at 6791.603 kb on + strand, within Pf6N2E2_5973at 6791.603 kb on + strand, within Pf6N2E2_5973at 6791.603 kb on + strand, within Pf6N2E2_5973at 6791.603 kb on + strand, within Pf6N2E2_5973at 6791.603 kb on + strand, within Pf6N2E2_5973at 6791.603 kb on + strand, within Pf6N2E2_5973at 6791.603 kb on + strand, within Pf6N2E2_5973at 6791.603 kb on + strand, within Pf6N2E2_5973at 6791.604 kb on - strand, within Pf6N2E2_5973at 6791.604 kb on - strand, within Pf6N2E2_5973at 6791.604 kb on - strand, within Pf6N2E2_5973at 6791.604 kb on - strand, within Pf6N2E2_5973at 6791.604 kb on - strand, within Pf6N2E2_5973at 6791.604 kb on - strand, within Pf6N2E2_5973at 6791.604 kb on - strand, within Pf6N2E2_5973at 6791.604 kb on - strand, within Pf6N2E2_5973at 6791.738 kb on + strand, within Pf6N2E2_5973at 6791.739 kb on - strand, within Pf6N2E2_5973at 6791.855 kb on + strandat 6791.856 kb on - strandat 6791.895 kb on - strandat 6791.895 kb on - strandat 6792.002 kb on + strand, within Pf6N2E2_5974at 6792.003 kb on - strand, within Pf6N2E2_5974at 6792.003 kb on - strand, within Pf6N2E2_5974at 6792.109 kb on + strand, within Pf6N2E2_5974at 6792.110 kb on - strand, within Pf6N2E2_5974at 6792.243 kb on - strand, within Pf6N2E2_5974at 6792.377 kb on + strand, within Pf6N2E2_5974at 6792.477 kb on + strandat 6792.477 kb on + strandat 6792.504 kb on + strandat 6792.505 kb on - strandat 6792.505 kb on - strandat 6792.505 kb on - strandat 6792.505 kb on - strandat 6792.505 kb on - strandat 6792.505 kb on - strandat 6792.561 kb on - strandat 6792.578 kb on - strandat 6792.607 kb on + strandat 6792.608 kb on - strandat 6792.608 kb on - strandat 6792.608 kb on - strandat 6792.608 kb on - strandat 6792.609 kb on + strandat 6792.609 kb on + strandat 6792.610 kb on - strandat 6792.610 kb on - strandat 6792.705 kb on - strandat 6792.927 kb on - strand, within Pf6N2E2_5975at 6792.969 kb on + strand, within Pf6N2E2_5975at 6792.969 kb on + strand, within Pf6N2E2_5975at 6792.970 kb on - strand, within Pf6N2E2_5975at 6793.249 kb on + strand, within Pf6N2E2_5975at 6793.249 kb on + strand, within Pf6N2E2_5975at 6793.250 kb on - strand, within Pf6N2E2_5975at 6793.250 kb on - strand, within Pf6N2E2_5975at 6793.391 kb on + strand, within Pf6N2E2_5975

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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6,790,869 - Pf6N2E2_5972 0.17 +0.8
6,790,869 - Pf6N2E2_5972 0.17 +0.2
6,790,909 + Pf6N2E2_5972 0.28 -0.8
6,790,910 - Pf6N2E2_5972 0.29 -2.1
6,790,910 - Pf6N2E2_5972 0.29 -0.4
6,791,271 + -0.1
6,791,271 + +1.0
6,791,283 + -1.9
6,791,283 + +0.1
6,791,283 + -1.1
6,791,284 - +0.1
6,791,284 - -1.8
6,791,284 - -1.6
6,791,284 - +0.5
6,791,309 + +0.1
6,791,310 - +0.7
6,791,310 - +1.7
6,791,310 - -0.3
6,791,312 + +0.0
6,791,312 + -2.2
6,791,312 + +0.4
6,791,313 - -0.1
6,791,313 - -0.4
6,791,331 + -1.8
6,791,332 - -0.3
6,791,332 - +0.6
6,791,470 + Pf6N2E2_5973 0.26 +0.1
6,791,471 - Pf6N2E2_5973 0.26 -2.3
6,791,558 + Pf6N2E2_5973 0.44 +0.3
6,791,559 - Pf6N2E2_5973 0.44 -0.5
6,791,559 - Pf6N2E2_5973 0.44 +1.3
6,791,559 - Pf6N2E2_5973 0.44 -1.1
6,791,588 + Pf6N2E2_5973 0.50 +0.8
6,791,588 + Pf6N2E2_5973 0.50 +0.0
6,791,589 - Pf6N2E2_5973 0.51 -1.1
6,791,603 + Pf6N2E2_5973 0.53 +0.1
6,791,603 + Pf6N2E2_5973 0.53 +0.7
6,791,603 + Pf6N2E2_5973 0.53 +0.0
6,791,603 + Pf6N2E2_5973 0.53 -0.7
6,791,603 + Pf6N2E2_5973 0.53 -0.7
6,791,603 + Pf6N2E2_5973 0.53 +0.4
6,791,603 + Pf6N2E2_5973 0.53 +0.9
6,791,603 + Pf6N2E2_5973 0.53 -0.1
6,791,603 + Pf6N2E2_5973 0.53 +1.7
6,791,603 + Pf6N2E2_5973 0.53 -0.3
6,791,604 - Pf6N2E2_5973 0.54 +0.3
6,791,604 - Pf6N2E2_5973 0.54 +0.8
6,791,604 - Pf6N2E2_5973 0.54 +0.5
6,791,604 - Pf6N2E2_5973 0.54 +0.9
6,791,604 - Pf6N2E2_5973 0.54 -0.2
6,791,604 - Pf6N2E2_5973 0.54 +1.0
6,791,604 - Pf6N2E2_5973 0.54 +0.7
6,791,604 - Pf6N2E2_5973 0.54 -0.4
6,791,738 + Pf6N2E2_5973 0.81 +0.2
6,791,739 - Pf6N2E2_5973 0.82 +0.3
6,791,855 + -0.9
6,791,856 - -1.7
6,791,895 - +0.6
6,791,895 - +0.7
6,792,002 + Pf6N2E2_5974 0.27 -1.1
6,792,003 - Pf6N2E2_5974 0.27 -0.4
6,792,003 - Pf6N2E2_5974 0.27 -0.2
6,792,109 + Pf6N2E2_5974 0.44 -1.8
6,792,110 - Pf6N2E2_5974 0.44 -2.3
6,792,243 - Pf6N2E2_5974 0.65 -0.6
6,792,377 + Pf6N2E2_5974 0.86 -0.3
6,792,477 + -0.0
6,792,477 + +0.6
6,792,504 + +0.2
6,792,505 - -0.7
6,792,505 - +1.9
6,792,505 - +0.4
6,792,505 - -0.3
6,792,505 - +1.2
6,792,505 - +1.0
6,792,561 - +0.3
6,792,578 - -1.0
6,792,607 + -0.2
6,792,608 - +0.4
6,792,608 - -0.8
6,792,608 - -1.0
6,792,608 - +0.7
6,792,609 + +2.7
6,792,609 + -0.5
6,792,610 - +0.6
6,792,610 - -0.4
6,792,705 - -1.5
6,792,927 - Pf6N2E2_5975 0.28 -1.4
6,792,969 + Pf6N2E2_5975 0.32 -0.2
6,792,969 + Pf6N2E2_5975 0.32 +0.7
6,792,970 - Pf6N2E2_5975 0.32 +1.9
6,793,249 + Pf6N2E2_5975 0.61 -0.4
6,793,249 + Pf6N2E2_5975 0.61 -0.4
6,793,250 - Pf6N2E2_5975 0.61 +0.3
6,793,250 - Pf6N2E2_5975 0.61 -0.8
6,793,391 + Pf6N2E2_5975 0.75 +1.1

Or see this region's nucleotide sequence